BAC Information

Click to search

BAC

Clone NameB6Ng01-062L24
Chromosome6 (Build37)
Map Location 120,728,176 - 120,867,421
singlet/doubletdoublet
Overlap geneSlc25a18, Atp6v1e1, Bcl2l13, Bid
Upstream geneErc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2
Downstream geneMical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062L24.bB6Ng01-062L24.g
ACCDH883049DH883050
length1,0641,168
definitionDH883049|Mus musculus domesticus DNA, BAC clone: B6Ng01-062L24, 5' end.DH883050|Mus musculus domesticus DNA, BAC clone: B6Ng01-062L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,866,358 - 120,867,421)(120,728,176 - 120,729,366)
sequence
gaattcactttcttgtttctctttcacttttgtcactgtcacgtgtcctt
tgggggtactggctggcacttaagtatatagcattgggacttctctggac
aggggaactagctagcagtttgagattatctgctagcctcctggttcttt
ccacattcatccttgctgattcattccatgaccgagaaccccgcaacccc
catccctgccttccccacaagagtttaaaaattctgcaagcagctgcgca
ggagaaacaatagggacctcccagcatctctgatagggccgattctgaca
gggtcactagtcttgagtgtgccaaccctgctatgtaatacatcaagaca
atgcggagaggtcgggatcaagtatgacaccccatcctcacgagggcagg
tcgcccaggctttggggactctggggagcgcaggttccgggtgtaccttc
cttcctgtcccccgtagcgagccggtaggacccttgggtttccgcaaagt
gtggccagtcggagggcggagcatccggagggcggggctatcacaggggc
ggggctcccgggcgagcacgaggaaaggtaggtggagtagagcgccgggc
cgagtgtggctccgcaaacctttgccttagcccgttcgccgcccggtacc
ggcgcagcggcgtctgcgtggtgagtatgcccaccctactgggcgccccc
acagttcccctctgggaggacggggtcggcacggagctcagtttcgtatg
ctatcgatccttcgtgatggcggggctcttgcgccttgatggaggcgggg
tgagggcgccggccacagggtgccaccgcggagctgaggggaaagcactc
actcgaagcctggggcgtgcgccactcgcggtcccctcagcgctcggtcc
tggtccgcttcgggcaggcctcctggtggacccggggtcccgcggtcgcg
cgccactcggcaggtgcgcgcagagctggaaaggcgggcctgagtctccg
ctgcgctccgctatggccacccaccaaaatcacagaacggctcagtccac
aaatgggtcttcaa
gaattcctgttatcagaagaaggtgtcagatcctctgaaacaggctaagt
gagctaccatatgagttttgagcctgggttcttaaccactaagccatctc
agcctctcaaatacaaaggactgtcaaggggctagaccattaggtgaacc
ccaggcagccccctgctctctgcaggcagctttctttcctgggtgctgcc
ttcatcctccagtccctcaagggtcagaccgaagtcctggctggctgcct
catttacatactttctccaccctcattcttcctgcctctgccaccccagt
cagtacattccatcgcattgccatgaaactctaagacctatgcccacttc
ttccagagtggcacacggtgtgtgctcttcagaagtttcacactgtcttt
tactgtcacaaaagtggtatttctggaacacatgctacacccacagtagt
gaactagactagccagggccatggagtagcccctctctgccagctacctt
tgttctctgctccttcgaaagtctacagtgcccttctggtgctttacaaa
actcactaagcagttatcactgtgaagtgagatctgaggagtactaagta
aagacacttgttaacaagttataaagctagctaaaagagcacttgggttc
attagaaggtaactggaatgctgctttattgcccttggttgggaatgagg
gaagcactgcagcagttacagaactcttccctattgctctagactgaatg
gaaggcctgctgcccatgaggtcagagcaactccactgagccacactgcc
agctttgtcctttgaaagtctcttcctagtggtgttggaaccagtaatat
ctaaattccctgagagtaaaggaatcttgtcagtcagctacaacccagct
acgtggaatactatcacactgccggtattcaccagtatgggccctgttgc
caagttaggactttgctgatgagaattcttttaaaaccatggctgagctc
aggcggtagtggcgtgggctttaatcccagcacttagggagcagagcagg
cggattctgggtttgtggccagcctgactacaaatgagttccattacggc
caggcttatacaaaaacctgtctcaaacaacaccacatgcgtggctaatt
taagttttttttttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120866358_120867421
seq2: B6Ng01-062L24.b_49_1105 (reverse)

seq1  CCCATTTGTGGGCTGTAGCCGTTCCTTGTTGATTTTTGTGGGTGGCCATA  50
      ||||||||||| ||| ||||||||  || ||||||| |||||||||||||
seq2  CCCATTTGTGGACTG-AGCCGTTC--TG-TGATTTTGGTGGGTGGCCATA  46

seq1  GCGGAGCGCAGC-GAGACCTCAGGCCCGCCTTTCCAGCTCTGCGCGCACC  99
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  GCGGAGCGCAGCGGAGA-CTCAGGCCCGCCTTTCCAGCTCTGCGCGCACC  95

seq1  TGCCGAGTGGCGCGCGACCGCGGGGACCCCGGGTCCACCAGGAGGCCTGC  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCCGAGTGGCGCGCGACCGC-GGGACCCCGGGTCCACCAGGAGGCCTGC  144

seq1  CCGAAGCGGACCAGGACCGAGCGCTGAGGGGGACCGCGAGTGGCGCACGC  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCGAAGCGGACCAGGACCGAGCGCTGA-GGGGACCGCGAGTGGCGCACGC  193

seq1  CCCAGGCCTTCGAGTGAGTGCCTTCCCCTCAGCTCCGCGGTGGCACCCTG  249
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCAGG-CTTCGAGTGAGTGCTTTCCCCTCAGCTCCGCGGTGGCACCCTG  242

seq1  TGGCCGGCGCCCTCACCCCGCCTCCATCAAGGCGCAAGAGCCCCGCCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGGCGCCCTCACCCCGCCTCCATCAAGGCGCAAGAGCCCCGCCATC  292

seq1  ACGAAGGATCGATAGCATACGAAACTGAGCTCCGTGCCGACCCCGTCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGATCGATAGCATACGAAACTGAGCTCCGTGCCGACCCCGTCCTC  342

seq1  CCAGAGGGGAACTGTGGGGGCGCCCAGTAGGGTGGGCATACTCACCACGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGGGAACTGTGGGGGCGCCCAGTAGGGTGGGCATACTCACCACGC  392

seq1  AGACGCCGCTGCGCCGGTACCGGGCGGCGAACGGGCTAAGGCAAAGGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCCGCTGCGCCGGTACCGGGCGGCGAACGGGCTAAGGCAAAGGTTT  442

seq1  GCGGAGCCACACTCGGCCCGGCGCTCTACTCCACCTACCTTTCCTCGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGCCACACTCGGCCCGGCGCTCTACTCCACCTACCTTTCCTCGTGC  492

seq1  TCGCCCGGGAGCCCCGCCCCTGTGATAGCCCCGCCCTCCGGATGCTCCGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCGGGAGCCCCGCCCCTGTGATAGCCCCGCCCTCCGGATGCTCCGC  542

seq1  CCTCCGACTGGCCACACTTTGCGGAAACCCAAGGGTCCTACCGGCTCGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGACTGGCCACACTTTGCGGAAACCCAAGGGTCCTACCGGCTCGCT  592

seq1  ACGGGGGACAGGAAGGAAGGTACACCCGGAACCTGCGCTCCCCAGAGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGGACAGGAAGGAAGGTACACCCGGAACCTGCGCTCCCCAGAGTCC  642

seq1  CCAAAGCCTGGGCGACCTGCCCTCGTGAGGATGGGGTGTCATACTTGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCTGGGCGACCTGCCCTCGTGAGGATGGGGTGTCATACTTGATC  692

seq1  CCGACCTCTCCGCATTGTCTTGATGTATTACATAGCAGGGTTGGCACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCTCTCCGCATTGTCTTGATGTATTACATAGCAGGGTTGGCACACT  742

seq1  CAAGACTAGTGACCCTGTCAGAATCGGCCCTATCAGAGATGCTGGGAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTAGTGACCCTGTCAGAATCGGCCCTATCAGAGATGCTGGGAGGT  792

seq1  CCCTATTGTTTCTCCTGCGCAGCTGCTTGCAGAATTTTTAAACTCTTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGTTTCTCCTGCGCAGCTGCTTGCAGAATTTTTAAACTCTTGTG  842

seq1  GGGAAGGCAGGGATGGGGGTTGCGGGGTTCTCGGTCATGGAATGAATCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCAGGGATGGGGGTTGCGGGGTTCTCGGTCATGGAATGAATCAG  892

seq1  CAAGGATGAATGTGGAAAGAACCAGGAGGCTAGCAGATAATCTCAAACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGAATGTGGAAAGAACCAGGAGGCTAGCAGATAATCTCAAACTG  942

seq1  CTAGCTAGTTCCCCTGTCCAGAGAAGTCCCAATGCTATATACTTAAGTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAGTTCCCCTGTCCAGAGAAGTCCCAATGCTATATACTTAAGTGC  992

seq1  CAGCCAGTACCCCCAAAGGACACGTGACAGTGACAAAAGTGAAAGAGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTACCCCCAAAGGACACGTGACAGTGACAAAAGTGAAAGAGAAA  1042

seq1  CAAGAAAGTGAATTC  1064
      |||||||||||||||
seq2  CAAGAAAGTGAATTC  1057

seq1: chr6_120728176_120729366
seq2: B6Ng01-062L24.g_67_1234

seq1  GAATTCCTGTTATCAGAAGAAGGTGTCAGATCCTCTGAAACAGGCTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTATCAGAAGAAGGTGTCAGATCCTCTGAAACAGGCTAAGT  50

seq1  GAGCTACCATATGAGTTTTGAGCCTGGGTTCTTAACCACTAAGCCATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACCATATGAGTTTTGAGCCTGGGTTCTTAACCACTAAGCCATCTC  100

seq1  AGCCTCTCAAATACAAAGGACTGTCAAGGGGCTAGACCATTAGGTGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCAAATACAAAGGACTGTCAAGGGGCTAGACCATTAGGTGAACC  150

seq1  CCAGGCAGCCCCCTGCTCTCTGCAGGCAGCTTTCTTTCCTGGGTGCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGCCCCCTGCTCTCTGCAGGCAGCTTTCTTTCCTGGGTGCTGCC  200

seq1  TTCATCCTCCAGTCCCTCAAGGGTCAGACCGAAGTCCTGGCTGGCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCCAGTCCCTCAAGGGTCAGACCGAAGTCCTGGCTGGCTGCCT  250

seq1  CATTTACATACTTTCTCCACCCTCATTCTTCCTGCCTCTGCCACCCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATACTTTCTCCACCCTCATTCTTCCTGCCTCTGCCACCCCAGT  300

seq1  CAGTACATTCCATCGCATTGCCATGAAACTCTAAGACCTATGCCCACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACATTCCATCGCATTGCCATGAAACTCTAAGACCTATGCCCACTTC  350

seq1  TTCCAGAGTGGCACACGGTGTGTGCTCTTCAGAAGTTTCACACTGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGTGGCACACGGTGTGTGCTCTTCAGAAGTTTCACACTGTCTTT  400

seq1  TACTGTCACAAAAGTGGTATTTCTGGAACACATGCTACACCCACAGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCACAAAAGTGGTATTTCTGGAACACATGCTACACCCACAGTAGT  450

seq1  GAACTAGACTAGCCAGGGCCATGGAGTAGCCCCTCTCTGCCAGCTACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGACTAGCCAGGGCCATGGAGTAGCCCCTCTCTGCCAGCTACCTT  500

seq1  TGTTCTCTGCTCCTTCGAAAGTCTACAGTGCCCTTCTGGTGCTTTACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGCTCCTTCGAAAGTCTACAGTGCCCTTCTGGTGCTTTACAAA  550

seq1  ACTCACTAAGCAGTTATCACTGTGAAGTGAGATCTGAGGAGTACTAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAAGCAGTTATCACTGTGAAGTGAGATCTGAGGAGTACTAAGTA  600

seq1  AAGACACTTGTTAACAAGTTATAAAGCTAGCTAAAAGAGCACTTGGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACTTGTTAACAAGTTATAAAGCTAGCTAAAAGAGCACTTGGGTTC  650

seq1  ATTAGAAGGTAACTGGAATGCTGCTTTATTGCCCTTGGTTGGGAATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGGTAACTGGAATGCTGCTTTATTGCCCTTGGTTGGGAATGAGG  700

seq1  GAAGCACTGCAGCAGTTACAGAACTCTTCCCTATTGCTCTAGACTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTGCAGCAGTTACAGAACTCTTCCCTATTGCTCTAGACTGAATG  750

seq1  GAAGGCCTGCTGCCCATGAGGTCAGAGCAACTCCACTGAGCCACACTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTGCTGCCCATGAGGTCAGAGCAACTCCACTGAGCCACACTGCC  800

seq1  AGCTTTGTCCTTTGAAAGTCTCTTCCTAGTGGTGTTGGAACCAGTAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTCCTTTGAAAGTCTCTTCCTAGTGGTGTTGGAACCAGTAATAT  850

seq1  CTAAATTCCCTGAGAGTAAAGGAATCTTGTCAGTCAGCTACAACCCAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCCCTGAGAGTAAAGGAATCTTGTCAGTCAGCTACAACCCAGCT  900

seq1  ACGTGGAATACTATCACACTGCCGGTATTCACCAGTATGGGCCCTGTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAATACTATCACACTGCCGGTATTCACCAGTATGGGCCCTGTTGC  950

seq1  CAAGTTTAGGACTTTGCTGATGAG-ATTCTTTTAAAACCATGGCTGAGCC  999
      |||| ||||||||||||||||||| |||||||||||||||||||||||| 
seq2  CAAG-TTAGGACTTTGCTGATGAGAATTCTTTTAAAACCATGGCTGAGCT  999

seq1  CAGGCGGTAGTGGCGTGGGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  1049
      ||||||||||||||||||| ||||||||||||||||| ||  ||||| ||
seq2  CAGGCGGTAGTGGCGTGGG-CTTTAATCCCAGCACTTAGGGAGCAGA-GC  1047

seq1  AGGCGGATTTCTGGGTTTGTGGCCAGCCTGATCTACAAAATGAGTTCCAA  1099
      ||||||| ||||||||||||||||||||||| |||| ||||||||||| |
seq2  AGGCGGA-TTCTGGGTTTGTGGCCAGCCTGA-CTAC-AAATGAGTTCC-A  1093

seq1  TAACAGCCAGGGCTATACAGAGAAACCCTGTCTCCAAAACAAACAAACAA  1149
      | || ||||||  ||||||   ||| |||||||      |||||||    
seq2  TTACGGCCAGGCTTATACA---AAAACCTGTCT------CAAACAACACC  1134

seq1  ACATGGCTGGCTAAATTTTAAAAGTTTTTTTTTTTTTTTTAA  1191
      |||||  |||||||  |||||       ||||||||||||||
seq2  ACATGCGTGGCTAA--TTTAA------GTTTTTTTTTTTTAA  1168