BAC Information

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BAC

Clone NameB6Ng01-063F09
Chromosome6 (Build37)
Map Location 143,266,960 - 143,406,219
singlet/doubletdoublet
Overlap genenone
Upstream geneSlco1a5, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream geneSox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063F09.bB6Ng01-063F09.g
ACCDH883463DH883464
length964909
definitionDH883463|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F09, 5' end.DH883464|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,405,265 - 143,406,219)(143,266,960 - 143,267,868)
sequence
gaattctgtcagctggaaagacagtaccaggtacacaccaaagcgtgact
gtcctaacaagggacactgacagagaaaagtccatttactactgattgtt
acactgctctgggcattttataaagacacaaccatggtcaaaacaggact
tctaaaatgccatactttttttttttttcagaaagacaaacaaacattgt
agtgggttataatacttaggaacctaggaagtttatttagtccacaaatt
aagatcttggagtaaatataataaatgtgctttaaaggttataaatcaat
aaggtgtcagtgtgcataaggatgctgtattctagccataattaaatttc
aaacctaattataatttgaggctttcttttaattacattgcaatattttc
ctttcctaagaagatgattcgtatagcatcttttatctgtaattttcatt
taattaaaaatgtaaataaatcaagcctactgcttaaaaatatttacttt
gcacgttaaaaaaagaggatttataaagttgggttgtatctatttaatca
tatttgcttggagccttaagcatggtgaataaatacgtacaagttgaggt
ctaaattctaaatatcacgaagacaagggggaacatgttgccagtaatta
tctttgttagcagtgacaactcttctgctgccactggaaattttctacta
atccttcaaagccaagttcacgtcttttgtgtgaaggcttgcctaactct
taaggtcaaattcaagaggagccaatggggccaatggggcagtagctaac
gacttaaatccagacgaacactagaatagaccaggattctgcacaaccca
ggaagcaaggtcttagctagaattactcccaagaggatggagtggtgaga
aggaaactgagttcctgactacatagaaagaagcatcctcttctctcttc
tctctctctctctc
gaattcttcaccaatgggaatctttgagatgttcaggtagtttgtataag
ccaatgtgttaggcaagaacttaaaaatgtttaaaaaaaataagggaatg
ctaaggataaatatgaatgtggtagcaatgttttacatttaatttttctg
tgtttttgtgtgtgtatgagtgaatgccacatgtatgtatgacttcacgg
aggccagaacagggtgtcatatttcacttgctgctcttccatttgaactg
gaatttgggcggggatcttggggaaaacactaagtacagttgaaccatct
ctccaagctcaatagctttcataagaagacctacagttaaatacttgtgg
tagcagaaggtagcctagctctcttagtaataagaaagccacccaccaag
aaggtagttgataagacattgcttcgttatctttatcttaatgacttgta
aattcttatccccaaagatacacaaacaatggtttggaggttggaactga
gattttaaagtttcttaaataaaatcatgaacactctgaacacttctttg
aacacgactccataaaaagtttagggtttacattttatgcaggctcccct
tccactttgatataaaggactccccaagtttgtgtctattttggatttgg
gcctgtttgctaatcctcataatgatggcaccattgccttctgaagtcat
cgtaacgagctgactctgaagcaaccaaaacggatgcgataaacctcaga
gaactcacgagaggcttcatatggggtcctcaccatcttttatagttcct
aaaactagacagacagattaataactttgggttgatttttgtagttattt
tccccagtaacaatcaaattatgaaaaaaatgtcacccttcatattaaat
atttcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143405265_143406219
seq2: B6Ng01-063F09.b_46_995 (reverse)

seq1  GAAGAG-GAAGAGGATGGCTTTCTTTCTATGTTAGTCAGGAACCTCAGTT  49
      |||||| ||||||||||   ||||||||||| |||||||||| |||||||
seq2  GAAGAGAGAAGAGGATG--CTTCTTTCTATG-TAGTCAGGAA-CTCAGTT  46

seq1  TCCTTCTCACCACTCCATCCTCTTTGGGAGTAATTCTAGCTAAGACCTTG  99
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTTCTCACCACTCCATCCTC-TTGGGAGTAATTCTAGCTAAGACCTTG  95

seq1  CTTCCTGGGTTGTGCAGAATCCTGGTCTATTCTAGTGTTCCTTCTGGATT  149
      ||||||||||||||||||||||||||||||||||||||| | ||||||||
seq2  CTTCCTGGGTTGTGCAGAATCCTGGTCTATTCTAGTGTT-CGTCTGGATT  144

seq1  TAAGTCGTTAGCTACTGCCCCATTGGCCCCATTGGCTCCTCTTGAATTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCGTTAGCTACTGCCCCATTGGCCCCATTGGCTCCTCTTGAATTTG  194

seq1  ACCTTAAGAGTTAGGCAAGCCTTCACACAAAAGACGTGAACTTGGCTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAGAGTTAGGCAAGCCTTCACACAAAAGACGTGAACTTGGCTTTG  244

seq1  AAGGATTAGTAGAAAATTTCCAGTGGCAGCAGAAGAGTTGTCACTGCTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTAGTAGAAAATTTCCAGTGGCAGCAGAAGAGTTGTCACTGCTAA  294

seq1  CAAAGATAATTACTGGCAACATGTTCCCCCTTGTCTTCGTGATATTTAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAATTACTGGCAACATGTTCCCCCTTGTCTTCGTGATATTTAGA  344

seq1  ATTTAGACCTCAACTTGTACGTATTTATTCACCATGCTTAAGGCTCCAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACCTCAACTTGTACGTATTTATTCACCATGCTTAAGGCTCCAAG  394

seq1  CAAATATGATTAAATAGATACAACCCAACTTTATAAATCCTCTTTTTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGATTAAATAGATACAACCCAACTTTATAAATCCTCTTTTTTTA  444

seq1  ACGTGCAAAGTAAATATTTTTAAGCAGTAGGCTTGATTTATTTACATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCAAAGTAAATATTTTTAAGCAGTAGGCTTGATTTATTTACATTTT  494

seq1  TAATTAAATGAAAATTACAGATAAAAGATGCTATACGAATCATCTTCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATGAAAATTACAGATAAAAGATGCTATACGAATCATCTTCTTA  544

seq1  GGAAAGGAAAATATTGCAATGTAATTAAAAGAAAGCCTCAAATTATAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAAATATTGCAATGTAATTAAAAGAAAGCCTCAAATTATAATT  594

seq1  AGGTTTGAAATTTAATTATGGCTAGAATACAGCATCCTTATGCACACTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGAAATTTAATTATGGCTAGAATACAGCATCCTTATGCACACTGA  644

seq1  CACCTTATTGATTTATAACCTTTAAAGCACATTTATTATATTTACTCCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTATTGATTTATAACCTTTAAAGCACATTTATTATATTTACTCCAA  694

seq1  GATCTTAATTTGTGGACTAAATAAACTTCCTAGGTTCCTAAGTATTATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAATTTGTGGACTAAATAAACTTCCTAGGTTCCTAAGTATTATAA  744

seq1  CCCACTACAATGTTTGTTTGTCTTTCTGAAAAAAAAAAAAAGTATGGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTACAATGTTTGTTTGTCTTTCTGAAAAAAAAAAAAAGTATGGCAT  794

seq1  TTTAGAAGTCCTGTTTTGACCATGGTTGTGTCTTTATAAAATGCCCAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGTCCTGTTTTGACCATGGTTGTGTCTTTATAAAATGCCCAGAG  844

seq1  CAGTGTAACAATCAGTAGTAAATGGACTTTTCTCTGTCAGTGTCCCTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAACAATCAGTAGTAAATGGACTTTTCTCTGTCAGTGTCCCTTGT  894

seq1  TAGGACAGTCACGCTTTGGTGTGTACCTGGTACTGTCTTTCCAGCTGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGTCACGCTTTGGTGTGTACCTGGTACTGTCTTTCCAGCTGACA  944

seq1  GAATTC  955
      ||||||
seq2  GAATTC  950

seq1: chr6_143266960_143267868
seq2: B6Ng01-063F09.g_69_977

seq1  GAATTCTTCACCAATGGGAATCTTTGAGATGTTCAGGTAGTTTGTATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACCAATGGGAATCTTTGAGATGTTCAGGTAGTTTGTATAAG  50

seq1  CCAATGTGTTAGGCAAGAACTTAAAAATGTTTAAAAAAAATAAGGGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGTTAGGCAAGAACTTAAAAATGTTTAAAAAAAATAAGGGAATG  100

seq1  CTAAGGATAAATATGAATGTGGTAGCAATGTTTTACATTTAATTTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGATAAATATGAATGTGGTAGCAATGTTTTACATTTAATTTTTCTG  150

seq1  TGTTTTTGTGTGTGTATGAGTGAATGCCACATGTATGTATGACTTCACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTGTGTGTATGAGTGAATGCCACATGTATGTATGACTTCACGG  200

seq1  AGGCCAGAACAGGGTGTCATATTTCACTTGCTGCTCTTCCATTTGAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAACAGGGTGTCATATTTCACTTGCTGCTCTTCCATTTGAACTG  250

seq1  GAATTTGGGCGGGGATCTTGGGGAAAACACTAAGTACAGTTGAACCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGGCGGGGATCTTGGGGAAAACACTAAGTACAGTTGAACCATCT  300

seq1  CTCCAAGCTCAATAGCTTTCATAAGAAGACCTACAGTTAAATACTTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTCAATAGCTTTCATAAGAAGACCTACAGTTAAATACTTGTGG  350

seq1  TAGCAGAAGGTAGCCTAGCTCTCTTAGTAATAAGAAAGCCACCCACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAGGTAGCCTAGCTCTCTTAGTAATAAGAAAGCCACCCACCAAG  400

seq1  AAGGTAGTTGATAAGACATTGCTTCGTTATCTTTATCTTAATGACTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTTGATAAGACATTGCTTCGTTATCTTTATCTTAATGACTTGTA  450

seq1  AATTCTTATCCCCAAAGATACACAAACAATGGTTTGGAGGTTGGAACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTATCCCCAAAGATACACAAACAATGGTTTGGAGGTTGGAACTGA  500

seq1  GATTTTAAAGTTTCTTAAATAAAATCATGAACACTCTGAACACTTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAGTTTCTTAAATAAAATCATGAACACTCTGAACACTTCTTTG  550

seq1  AACACGACTCCATAAAAAGTTTAGGGTTTACATTTTATGCAGGCTCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGACTCCATAAAAAGTTTAGGGTTTACATTTTATGCAGGCTCCCCT  600

seq1  TCCACTTTGATATAAAGGACTCCCCAAGTTTGTGTCTA-TTTGGATTTGG  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCACTTTGATATAAAGGACTCCCCAAGTTTGTGTCTATTTTGGATTTGG  650

seq1  GCCTGTTTGCTAATCCTCATAATGATGGCACCATTGCCTTCTGAAGTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTGCTAATCCTCATAATGATGGCACCATTGCCTTCTGAAGTCAT  700

seq1  CGTAACGAGCTGACTCTGAAGCAACCAAAAACGGATGCGATAAACCTCAG  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGTAACGAGCTGACTCTGAAGCAACC-AAAACGGATGCGATAAACCTCAG  749

seq1  AGAACTCACGAGAGGCTTCATATGGGGTCCTCACCATCTTTTATAGTTCC  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAACTCACGAGAGGCTTCATATGGGGTCCTCACCATCTTTTATAGTT-C  798

seq1  CTAAAACTAGACAGACAGATT-ATAACTTT-GGTTGATTTTTGTTAGTTA  847
      ||||||||||||||||||||| |||||||| |||||||||||| ||||||
seq2  CTAAAACTAGACAGACAGATTAATAACTTTGGGTTGATTTTTG-TAGTTA  847

seq1  TTTTCCCCAGTAACAATCAAA-TATGAAAAAGATGTCATCCCTTCATTAT  896
      ||||||||||||||||||||| ||||||||| |||||| ||||||| |||
seq2  TTTTCCCCAGTAACAATCAAATTATGAAAAAAATGTCA-CCCTTCA-TAT  895

seq1  TAAA-ATTTCAACT  909
      |||| |||||||||
seq2  TAAATATTTCAACT  909