BAC Information

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BAC

Clone NameB6Ng01-063K24
Chromosome6 (Build37)
Map Location 65,466,516 - 65,619,633
singlet/doubletdoublet
Overlap gene9030611K07Rik
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik
Downstream geneA930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063K24.bB6Ng01-063K24.g
ACCDH883705DH883706
length9341,030
definitionDH883705|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K24, 5' end.DH883706|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,619,001 - 65,619,633)(65,466,516 - 65,467,542)
sequence
gaattcaacattgtgttggcagctggagagggaggaaggcttttgagaga
ggtcaggctggaatctggggttatcagcattcaggtgttttacaagtctg
agaggaagaaggaagtaaaaagacagaggaatgatcacgccaggacacta
gtgttacagaaatagcgagaagaatcctgccagtgatgaacagagttctc
ctttcctaaactcaccatcatttacggtcatttgcttttctttccttttt
tttttttttaattactattatttttttacactccagattttattcctccc
ctatccaccctctgactgctccatatcctgtaccttctcctcaccccagt
ctccacgaggatgtccccacttcccaccccacccccaccccacctgacct
ctaaactccctgaggtctccagtctcttgagggttaggtacatcatctct
ggttgaacagagacccaacaatcctctgctgtgcatgtgttgggggcctc
atatcagctggtgtatgctgcctggttggtagtccggtgttaaagagatc
ttgggggtccaggttagttgaaactgctggcccttctatagggttgccct
cctcctcagcttcttctagctttcccctaattcaaccataaaggccagca
gtttctgtccattggttgggtgcaaatatctgcatctgactcagctgctt
attgggtcttctggaatgtggtcatgataggtccctttttgtgaccactc
catagcctcagtaatagtgtcaggccttgggacctccacttgagctggat
cccactttggggtctgtctctggaccttcttttcctcagactcctctccc
atttccatccctgtaattctttcagacaggaacaattagggatcagagtt
gagactgtgggatggctaccccatcatcacttga
gaattcatgagttggtgattctgctttgtgtcactggctcacactaaggg
aaccacatccagaatgaatgtggatgaagttcaaggggcacaggatgcct
tgtcacttggaaacattctcaaatgcttttaatgtctttgtacagccacc
agttttgagactattaaggcacaaacctttaagggggatttaataaaata
atcatcaaaattctgtttctcctggaagtgttgaatccagaggttaagtg
aaagcacttcatctggaaagtaccacggggaagtggacgaaaagaaccga
aagcaatctgtacaatgggaaaagttcgcccaggagaaatcttacgaatg
cttactacagaagtctttaaactatgagtcatgggtcatgatcagtcaag
tattgctcttcagctttcagtaaccatgaaagtagttttttaccctacca
gtggtgatagctagaaaagataaactcccacgcagagaggcagtgggagt
gctgggaggtggttacgggctgtgtggggagttgtaggctgctgggatac
ttcacagtccctggccggaccaactgctcagggtagtttcttattcactg
tgttcctgcctcccttaaatttgccccatactttcaaaagccagccttgc
ttgtgaaatgaaaactttggcgattctatcaacttgtaccagtacaggag
ataaagtataaatcactcatacatttttagtattcagaatgcatggctat
gtttaaatatattgttgggttgttccatttaaaataaaggtgccatcatt
caatataataaatttcagcatttcactggaaactccctaagattttgggt
cacagtgtccacagctattgccaagagaaatatgacctatatttcattgt
tagtgaagactttgttctcagacactgtgtctagacaacaatgtactctc
aactaataaagcacaaaagaattgttacttgagttcttcttaaggatagc
aaatcaccttcgaacggatgacggacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65619001_65619633
seq2: B6Ng01-063K24.b_48_680 (reverse)

seq1  GAATTAGGGGAAAGCTAGAAGAAGCTGAGGAGGAGGGCAACCCTATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGGGGAAAGCTAGAAGAAGCTGAGGAGGAGGGCAACCCTATAGAA  50

seq1  GGGCCAGCAGTTTCAACTAACCTGGACCCCCAAGATCTCTTTAACACCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCAGTTTCAACTAACCTGGACCCCCAAGATCTCTTTAACACCGG  100

seq1  ACTACCAACCAGGCAGCATACACCAGCTGATATGAGGCCCCCAACACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAACCAGGCAGCATACACCAGCTGATATGAGGCCCCCAACACATG  150

seq1  CACAGCAGAGGATTGTTGGGTCTCTGTTCAACCAGAGATGATGTACCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAGGATTGTTGGGTCTCTGTTCAACCAGAGATGATGTACCTAA  200

seq1  CCCTCAAGAGACTGGAGACCTCAGGGAGTTTAGAGGTCAGGTGGGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGAGACTGGAGACCTCAGGGAGTTTAGAGGTCAGGTGGGGTGGG  250

seq1  GGTGGGGTGGGAAGTGGGGACATCCTCGTGGAGACTGGGGTGAGGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTGGGAAGTGGGGACATCCTCGTGGAGACTGGGGTGAGGAGAAG  300

seq1  GTACAGGATATGGAGCAGTCAGAGGGTGGATAGGGGAGGAATAAAATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGATATGGAGCAGTCAGAGGGTGGATAGGGGAGGAATAAAATCTG  350

seq1  GAGTGTAAAAAAATAATAGTAATTAAAAAAAAAAAAAAGGAAAGAAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAAAAAAATAATAGTAATTAAAAAAAAAAAAAAGGAAAGAAAAGC  400

seq1  AAATGACCGTAAATGATGGTGAGTTTAGGAAAGGAGAACTCTGTTCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCGTAAATGATGGTGAGTTTAGGAAAGGAGAACTCTGTTCATCA  450

seq1  CTGGCAGGATTCTTCTCGCTATTTCTGTAACACTAGTGTCCTGGCGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGATTCTTCTCGCTATTTCTGTAACACTAGTGTCCTGGCGTGAT  500

seq1  CATTCCTCTGTCTTTTTACTTCCTTCTTCCTCTCAGACTTGTAAAACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCTGTCTTTTTACTTCCTTCTTCCTCTCAGACTTGTAAAACACC  550

seq1  TGAATGCTGATAACCCCAGATTCCAGCCTGACCTCTCTCAAAAGCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTGATAACCCCAGATTCCAGCCTGACCTCTCTCAAAAGCCTTCC  600

seq1  TCCCTCTCCAGCTGCCAACACAATGTTGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCAGCTGCCAACACAATGTTGAATTC  633

seq1: chr6_65466516_65467542
seq2: B6Ng01-063K24.g_68_1097

seq1  GAATTCATGAGTTGGTGATTCTGCTTTGTGTCACTGGCTCACACTAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGTTGGTGATTCTGCTTTGTGTCACTGGCTCACACTAAGGG  50

seq1  AACCACATCCAGAATGAATGTGGATGAAGTTCAAGGGGCACAGGATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATCCAGAATGAATGTGGATGAAGTTCAAGGGGCACAGGATGCCT  100

seq1  TGTCACTTGGAAACATTCTCAAATGCTTTTAATGTCTTTGTACAGCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGGAAACATTCTCAAATGCTTTTAATGTCTTTGTACAGCCACC  150

seq1  AGTTTTGAGACTATTAAGGCACAAACCTTTAAGGGGGATTTAATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAGACTATTAAGGCACAAACCTTTAAGGGGGATTTAATAAAATA  200

seq1  ATCATCAAAATTCTGTTTCTCCTGGAAGTGTTGAATCCAGAGGTTAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAAATTCTGTTTCTCCTGGAAGTGTTGAATCCAGAGGTTAAGTG  250

seq1  AAAGCACTTCATCTGGAAAGTACCACGGGGAAGTGGACGAAAAGAACCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTCATCTGGAAAGTACCACGGGGAAGTGGACGAAAAGAACCGA  300

seq1  AAGCAATCTGTACAATGGGAAAAGTTCGCCCAGGAGAAATCTTACGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTGTACAATGGGAAAAGTTCGCCCAGGAGAAATCTTACGAATG  350

seq1  CTTACTACAGAAGTCTTTAAACTATGAGTCATGGGTCATGATCAGTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTACAGAAGTCTTTAAACTATGAGTCATGGGTCATGATCAGTCAAG  400

seq1  TATTGCTCTTCAGCTTTCAGTAACCATGAAAGTAGTTTTTTACCCTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCTTCAGCTTTCAGTAACCATGAAAGTAGTTTTTTACCCTACCA  450

seq1  GTGGTGATAGCTAGAAAAGATAAACTCCCACGCAGAGAGGCAGTGGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATAGCTAGAAAAGATAAACTCCCACGCAGAGAGGCAGTGGGAGT  500

seq1  GCTGGGAGGTGGTTACGGGCTGTGTGGGGAGTTGTAGGCTGCTGGGATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGGTGGTTACGGGCTGTGTGGGGAGTTGTAGGCTGCTGGGATAC  550

seq1  TTCACAGTCCCTGGCCGGACCAACTGCTCAGGGTAGTTTCTTATTCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTCCCTGGCCGGACCAACTGCTCAGGGTAGTTTCTTATTCACTG  600

seq1  TGTTCCTGCCTCCCTTAAATTTGCCCCATACTTTCAAAAGCCAGCCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGCCTCCCTTAAATTTGCCCCATACTTTCAAAAGCCAGCCTTGC  650

seq1  TTGTGAAATGAAAACTTTGGCGATTCTATCAACTTGTACCAGTACAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATGAAAACTTTGGCGATTCTATCAACTTGTACCAGTACAGGAG  700

seq1  ATAAAGTATAAATCACTCATACATTTTTAGTATTCAGAATGCATGGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATAAATCACTCATACATTTTTAGTATTCAGAATGCATGGCTAT  750

seq1  GTTTAAATATATTGTTGGGTTGTTCCATTTAAAATAAAGGTGCCATCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATATATTGTTGGGTTGTTCCATTTAAAATAAAGGTGCCATCATT  800

seq1  CAATATAATAAA-TTCAGCATTTCACTGGAAACTCCCTAAGATTTTGGGT  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAATATAATAAATTTCAGCATTTCACTGGAAACTCCCTAAGATTTTGGGT  850

seq1  CACAGTGTCCACAGCTATTGCCAAGAG-AATATGACCTATATTTCATTGT  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACAGTGTCCACAGCTATTGCCAAGAGAAATATGACCTATATTTCATTGT  900

seq1  TAGTTGAAGACTGTG-TCTCAGACACTGTGTCTTAGACAACAATGTACTC  947
      ||| |||||||| || |||||||||||||||| |||||||||||||||| 
seq2  TAG-TGAAGACTTTGTTCTCAGACACTGTGTC-TAGACAACAATGTACT-  947

seq1  CTCAACTAAATAAAGCACCAAAAAGAAATTGTTACTTTGAGTTTCTTCTT  997
      ||||||| ||||||||||  ||||| ||||||||| ||||| ||||||||
seq2  CTCAACT-AATAAAGCAC--AAAAG-AATTGTTAC-TTGAG-TTCTTCTT  991

seq1  AAAGATAAGCAAATTCACCTT-----------CAGACAGAC  1027
      || ||| |||||| |||||||           | |||||||
seq2  AAGGAT-AGCAAA-TCACCTTCGAACGGATGACGGACAGAC  1030