BAC Information

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BAC

Clone NameB6Ng01-063O04
Chromosome6 (Build37)
Map Location 99,554,698 - 99,631,101
singlet/doubletdoublet
Overlap geneEif4e3
Upstream geneLOC665963, LOC665979, Foxp1
Downstream geneGpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp, Shq1, LOC625221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063O04.bB6Ng01-063O04.g
ACCDH883842DH883843
length633572
definitionDH883842|Mus musculus domesticus DNA, BAC clone: B6Ng01-063O04, 5' end.DH883843|Mus musculus domesticus DNA, BAC clone: B6Ng01-063O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,630,498 - 99,631,101)(99,554,698 - 99,555,272)
sequence
gaattcagtgtatgtgtttttgtagccactcattgcagaatgcttccaac
tcccctttggataattccactcatcagagaacatacttgtgtgactcaaa
ttctattgaatttattgacactagttgtggcctggaatatgctgtgtctt
gttggttaaaacaaataaacttcacatgcacttgacaagagtgtattgtg
tctttattgaatggaatgctctatcaaatgtccatcagatcaaggtgatt
ggcattttgttaagatatttatgttctttctgatttttttcttctggtct
actgtgagaggagtgttaaatccataactgcaattctggcttcccatatt
tctgtttgaacttgtaaccattttggttgtatactctagagtgctgtcag
ggctagaacttgaaattattgtatcctctttgcacattggtgcatctgtg
ttctcaactagtcttcattgctggtattgaaaacaaacacctttgttctg
gctttcttaatgtggcattgcatgagaagaattgttgttagaacaaaatg
actgtaagaattaacttaaagatacacattgttgggggagggaggcaggt
agaggacaaggaagggagggagggagaggagga
cttggatcgtcctgggccagccactacagcatgtgggtaatggatggggc
ccgtggtatttccttgtttagaaaaataaatcaccctgcaaacttttact
atgttccacataagatggaggcacatcagcacttgctatgttttcctctc
ctgagctggcttggcagggtgccttgggctgcagagaacagccagaggct
gccaagcagggctgcttggttctttgcccattcctttaggggttgtaaac
atcctgccctggaaaccttcaccaacctgtagctagaaacctccctggtg
tggtggagctggtgtgaggagctgtggggtgggggctggaatcaatgagt
cactgtggggagggtgggaaggggggtcctgctggatccgaaggagctta
ggtgctaccctcaaacagaaagacattgcttaggagtgaagtgcaggggc
tggatagatggctcagtggttaagagcactgactgctcttccagaggttc
tgagttcagttcccagcaaccacattggtggcttacaacctttccgtaat
ggaatctgatttcctcttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99630498_99631101
seq2: B6Ng01-063O04.b_73_676 (reverse)

seq1  TCCTCCTCTCCCTCCCTCCCTTCCTTGTCCTCTACCTGCCTCCCTCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTCCCTCCCTCCCTTCCTTGTCCTCTACCTGCCTCCCTCCCCC  50

seq1  AACAATGTGTATCTTTAAGTTAATTCTTACAGTCATTTTGTTCTAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTGTATCTTTAAGTTAATTCTTACAGTCATTTTGTTCTAACAAC  100

seq1  AATTCTTCTCATGCAATGCCACATTAAGAAAGCCAGAACAAAGGTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCTCATGCAATGCCACATTAAGAAAGCCAGAACAAAGGTGTTTG  150

seq1  TTTTCAATACCAGCAATGAAGACTAGTTGAGAACACAGATGCACCAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATACCAGCAATGAAGACTAGTTGAGAACACAGATGCACCAATGT  200

seq1  GCAAAGAGGATACAATAATTTCAAGTTCTAGCCCTGACAGCACTCTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGATACAATAATTTCAAGTTCTAGCCCTGACAGCACTCTAGAG  250

seq1  TATACAACCAAAATGGTTACAAGTTCAAACAGAAATATGGGAAGCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACCAAAATGGTTACAAGTTCAAACAGAAATATGGGAAGCCAGAA  300

seq1  TTGCAGTTATGGATTTAACACTCCTCTCACAGTAGACCAGAAGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTATGGATTTAACACTCCTCTCACAGTAGACCAGAAGAAAAAAA  350

seq1  TCAGAAAGAACATAAATATCTTAACAAAATGCCAATCACCTTGATCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAACATAAATATCTTAACAAAATGCCAATCACCTTGATCTGAT  400

seq1  GGACATTTGATAGAGCATTCCATTCAATAAAGACACAATACACTCTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTGATAGAGCATTCCATTCAATAAAGACACAATACACTCTTGTC  450

seq1  AAGTGCATGTGAAGTTTATTTGTTTTAACCAACAAGACACAGCATATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATGTGAAGTTTATTTGTTTTAACCAACAAGACACAGCATATTCC  500

seq1  AGGCCACAACTAGTGTCAATAAATTCAATAGAATTTGAGTCACACAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAACTAGTGTCAATAAATTCAATAGAATTTGAGTCACACAAGTA  550

seq1  TGTTCTCTGATGAGTGGAATTATCCAAAGGGGAGTTGGAAGCATTCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGATGAGTGGAATTATCCAAAGGGGAGTTGGAAGCATTCTGCA  600

seq1  ATGA  604
      ||||
seq2  ATGA  604

seq1: chr6_99554698_99555272
seq2: B6Ng01-063O04.g_67_644

seq1  GAATTCCTTGGATCGTCCTGGGCCAGCCACTACAGCATGTGGGTAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGATCGTCCTGGGCCAGCCACTACAGCATGTGGGTAATGGA  50

seq1  TGGGGCCCGTGGTATTTCCTTGTTTAGAAAAATAAATCACCCTGCAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCCGTGGTATTTCCTTGTTTAGAAAAATAAATCACCCTGCAAACT  100

seq1  TTTACTATGTTCCACATAAGATGGAGGCACATCAGCACTTGCTATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATGTTCCACATAAGATGGAGGCACATCAGCACTTGCTATGTTTT  150

seq1  CCTCTCCTGAGCTGGCTTGGCAGGGTGCCTTGGGCTGCAGAGAACAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTGAGCTGGCTTGGCAGGGTGCCTTGGGCTGCAGAGAACAGCCA  200

seq1  GAGGCTGCCAAGCAGGGCTGCTTGGTTCTTTGCCCATTCCTTTAGGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCCAAGCAGGGCTGCTTGGTTCTTTGCCCATTCCTTTAGGGGTT  250

seq1  GTAAACATCCTGCCCTGGAAACCTTCACCAACCTGTAGCTAGAAACCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATCCTGCCCTGGAAACCTTCACCAACCTGTAGCTAGAAACCTCC  300

seq1  CTGGTGTGGTGGAGCTGGTGTGAGGAGCTGTGGGGTGGGGGCTGGAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGGTGGAGCTGGTGTGAGGAGCTGTGGGGTGGGGGCTGGAATCA  350

seq1  ATGAGTCACTGTGGGGAGGGTGGGAAGGGGGGTCCTGCTGGATCCGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCACTGTGGGGAGGGTGGGAAGGGGGGTCCTGCTGGATCCGAAGG  400

seq1  AGCTTAGGTGCTACCCTCAAACAGAAAGACATTGCTTAGGAGTGAAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGTGCTACCCTCAAACAGAAAGACATTGCTTAGGAGTGAAGTGC  450

seq1  AGGGGCTGGATAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGATAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAG  500

seq1  AGGTTCTGAGTTCAGTTCCCAGCAACCACA-TGGTGGCTTACAACC-TTC  548
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  AGGTTCTGAGTTCAGTTCCCAGCAACCACATTGGTGGCTTACAACCTTTC  550

seq1  CGTAATGGAATCTGATTTCCTC-TCTTC  575
      |||||||||||||||||||||| |||||
seq2  CGTAATGGAATCTGATTTCCTCTTCTTC  578