BAC Information

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BAC

Clone NameB6Ng01-064C15
Chromosome6 (Build37)
Map Location 52,337,307 - 52,497,397
singlet/doubletdoublet
Overlap gene1700094M24Rik, EG545841, Hibadh
Upstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487
Downstream geneTax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064C15.bB6Ng01-064C15.g
ACCDH884035DH884036
length1,017826
definitionDH884035|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C15, 5' end.DH884036|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,496,376 - 52,497,397)(52,337,307 - 52,337,990)
sequence
gaattctgtttatagtatttttctagctatgtggaggtaaaagtgcttaa
tatagggcctgggtgtgcggctcagtgtgagcgcgtggctcagtgggaac
atgcttgcagggcatgcagtgagcatgtggctcagtgtgagtgtgcttgc
ctacctttgtatgaagcacttggtttgatcctcagtatcaaaggacagaa
aacatgcacacatacaatgtgtgtaagaatctttttttttttttttttca
gattctatttttccttccctacccacttctccctttagcctagccgagtc
tcccacacgtctcaatatgcttccttctgcctttgatctaggatctggga
ttggctcaagactctgccaccagcaccaagaccccaattctcctaggaag
cctggcccatcagatatacaggatgatgtgttcaaagggctactcaaaga
aagacttctcatctgtgttccagtatctacgggaggaggagcccttctga
ctgcgccctgaggacgtggacgctgttaggaaccaaactctgtcctgagc
ttcctctagctcactctagaagtaatggtctaatcaaaggtcgtctgtct
gcttttgattgtctacatcacagcaatccctgggaatttctatccatttt
aaatgctgccgcttttcatctgtttagccagcacacccaatggttttcac
taactagcccagttgacctttttgaagttttgagccttgagcaccttcaa
caaaattgagcactctgattaggatatccactttgcaaataaaaccaaat
gttttgtcacatgatggtaaaaaggaaagaaatctgttacaaagacaaat
taaagggaaatttgtcctgttaaccacatgttattattccttcattcagg
gttactgacctactgtccagggcttgataagtaagcagcttgttgccctt
gtacagtatctagtgtacctcctgttacagcttccacactcgccgcttgc
ttcagtatttttgcttc
gaattcaaccaagatcccacctttttttttataaggaatctacaaaacat
cttatcatcttcatgtaattctgtgagcactaggaatgtcagccttcacc
cagccttgcctcagacccttgacccaaagagagcaaaagtctcacaaact
aaagtcactacttcttttttttttctttcttgaattgttactcaatatct
atttttttaattaggtattttttttttcatttacgtttcaaatgctatcc
caaaagttccccataccctccaccccaccactcccctacccacccactcc
cactttttggccctggcgttcccctgtactgaggcatataaagtttgcaa
gaccaaggggcctctcttcccaatgatggccgactaggccatcttctgat
acatatgcagctagagacaagagctctggggtactggttagttcatattg
ttgttccacctatagggttgcagatccctttagccccttgggtactttct
ctaactcctccattggggaccctgtgttccatccaatagctgactgtgag
aatccactttctgtgtttaccaggccccggcatagcctcacaagagacag
ctatatcagggtcctttcagaaaaatcttgttggttagaatggctactcc
agtttgtttcttcagaccatttgcttggaaaattgttttccagactttca
ctctgaggtagtgtctgtctttttccctgagatgggtttcctgtaaacag
caaaatgttggtcctgttttgtgtagccagtctgttagtctatgtctttt
tattggggaattgagtcattgatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52496376_52497397
seq2: B6Ng01-064C15.b_31_1047 (reverse)

seq1  GAAGCAAAAATACTGAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGA  50
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  GAAGCAAAAATACTGAAGCAAG-CGGC-GAGTGTGGAAGCTGTAACAGGA  48

seq1  GGGTACACTAAGATACTGTAACAAGGGCCAACAAGCTGCCTTACCTATCA  100
       |||||||| ||||||||| ||||||| |||||||||| ||||| |||||
seq2  -GGTACACT-AGATACTGT-ACAAGGG-CAACAAGCTG-CTTACTTATCA  93

seq1  AGCCCTGGACAGTAGGTCAGTAACCCTGAATGAAGGAATAATAGCATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCCCTGGACAGTAGGTCAGTAACCCTGAATGAAGGAATAATAACATGTG  143

seq1  GTTAACAGGACAAATTTCCCTCTAATTTGTCTTTGTAACAGATTTCTTTC  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTAACAGGACAAATTTCCCTTTAATTTGTCTTTGTAACAGATTTCTTTC  193

seq1  CTTTTTACCATCATGTTGACAAAACATTTGGTTTTATTTGCAAAGTGGAT  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTTTACCATCATG-TGACAAAACATTTGGTTTTATTTGCAAAGTGGAT  242

seq1  ATCCTAATCAGAGTGCTCAATTTTGTTGAAGGTGCTCAAGGCTC-AAACT  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCCTAATCAGAGTGCTCAATTTTGTTGAAGGTGCTCAAGGCTCAAAACT  292

seq1  TCAAAAAGGTCAACTGGGCTAGTTAGTG-AAACCATTGGGTGTGCTGGCT  348
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAAAAAGGTCAACTGGGCTAGTTAGTGAAAACCATTGGGTGTGCTGGCT  342

seq1  AAACAGATG-AAAGCGGCAGCATTTAAAATGGATAGAAATTCCCAGGGAT  397
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGAAAAGCGGCAGCATTTAAAATGGATAGAAATTCCCAGGGAT  392

seq1  TGCTGTGATGTAGACAATCAAAAGCAGACAGACGACCTTTGATTAGACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGATGTAGACAATCAAAAGCAGACAGACGACCTTTGATTAGACCA  442

seq1  TTACTTCTAGAGTGAGCTAGAGGAAGCTCAGGACAGAGTTTGGTTCCTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTAGAGTGAGCTAGAGGAAGCTCAGGACAGAGTTTGGTTCCTAA  492

seq1  CAGCGTCCACGTCCTCAGGGCGCAGTCAGAAGGGCTCCTCCTCCCGTAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCCACGTCCTCAGGGCGCAGTCAGAAGGGCTCCTCCTCCCGTAGA  542

seq1  TACTGGAACACAGATGAGAAGTCTTTCTTTGAGTAGCCCTTTGAACACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAACACAGATGAGAAGTCTTTCTTTGAGTAGCCCTTTGAACACAT  592

seq1  CATCCTGTATATCTGATGGGCCAGGCTTCCTAGGAGAATTGGGGTCTTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTATATCTGATGGGCCAGGCTTCCTAGGAGAATTGGGGTCTTGG  642

seq1  TGCTGGTGGCAGAGTCTTGAGCCAATCCCAGATCCTAGATCAAAGGCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGGCAGAGTCTTGAGCCAATCCCAGATCCTAGATCAAAGGCAGA  692

seq1  AGGAAGCATATTGAGACGTGTGGGAGACTCGGCTAGGCTAAAGGGAGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCATATTGAGACGTGTGGGAGACTCGGCTAGGCTAAAGGGAGAAG  742

seq1  TGGGTAGGGAAGGAAAAATAGAATCTGAAAAAAAAAAAAAAAAAGATTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGGAAGGAAAAATAGAATCTGAAAAAAAAAAAAAAAAAGATTCT  792

seq1  TACACACATTGTATGTGTGCATGTTTTCTGTCCTTTGATACTGAGGATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATTGTATGTGTGCATGTTTTCTGTCCTTTGATACTGAGGATCA  842

seq1  AACCAAGTGCTTCATACAAAGGTAGGCAAGCACACTCACACTGAGCCACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTGCTTCATACAAAGGTAGGCAAGCACACTCACACTGAGCCACA  892

seq1  TGCTCACTGCATGCCCTGCAAGCATGTTCCCACTGAGCCACGCGCTCACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTGCATGCCCTGCAAGCATGTTCCCACTGAGCCACGCGCTCACA  942

seq1  CTGAGCCGCACACCCAGGCCCTATATTAAGCACTTTTACCTCCACATAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCGCACACCCAGGCCCTATATTAAGCACTTTTACCTCCACATAGC  992

seq1  TAGAAAAATACTATAAACAGAATTC  1022
      |||||||||||||||||||||||||
seq2  TAGAAAAATACTATAAACAGAATTC  1017

seq1: chr6_52337307_52337990
seq2: B6Ng01-064C15.g_69_753

seq1  GAATTCAACCAAGATCCCACCTTTTTTTTTATAAGGAATCTACAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAAGATCCCACCTTTTTTTTTATAAGGAATCTACAAAACAT  50

seq1  CTTATCATCTTCATGTAATTCTGTGAGCACTAGGAATGTCAGCCTTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATCTTCATGTAATTCTGTGAGCACTAGGAATGTCAGCCTTCACC  100

seq1  CAGCCTTGCCTCAGACCCTTGACCCAAAGAGAGCAAAAGTCTCACAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGCCTCAGACCCTTGACCCAAAGAGAGCAAAAGTCTCACAAACT  150

seq1  AAAGTCACTACTTCTTTTTTTTTTCTTTCTTGAATTGTTACTCAATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACTACTTCTTTTTTTTTTCTTTCTTGAATTGTTACTCAATATCT  200

seq1  ATTTTTTTAATTAGGTATTTTTTTTTTCATTTACGTTTCAAATGCTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAATTAGGTATTTTTTTTTTCATTTACGTTTCAAATGCTATCC  250

seq1  CAAAAGTTCCCCATACCCTCCACCCCACCACTCCCCTACCCACCCACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTCCCCATACCCTCCACCCCACCACTCCCCTACCCACCCACTCC  300

seq1  CACTTTTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAA  350

seq1  GACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCTGAT  400

seq1  ACATATGCAGCTAGAGACAAGAGCTCTGGGGTACTGGTTAGTTCATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCAGCTAGAGACAAGAGCTCTGGGGTACTGGTTAGTTCATATTG  450

seq1  TTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCCCCTTGGGTACTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCCCCTTGGGTACTTTCT  500

seq1  CTAACTCCTCCATTGGGGACCCTGTGTTCCATCCAATAGCTGACTGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCTCCATTGGGGACCCTGTGTTCCATCCAATAGCTGACTGTGAG  550

seq1  AATCCAC-TTCTGTGTTTACCAGGCCCCGGCATAGCCTCACAAGAGACAG  599
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTTTCTGTGTTTACCAGGCCCCGGCATAGCCTCACAAGAGACAG  600

seq1  CTATATCAGGGTCCTTTCAGAAAAATCTTGTTGGTTAGAATGGCTACTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGGGTCCTTTCAGAAAAATCTTGTTGGTTAGAATGGCTACTCC  650

seq1  AGTTTGTTTCTTCAGACCATTTGCTTGGAAAATTG  684
      |||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTCTTCAGACCATTTGCTTGGAAAATTG  685