BAC Information

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BAC

Clone NameB6Ng01-064E11
Chromosome6 (Build37)
Map Location 37,914,841 - 38,043,811
singlet/doubletdoublet
Overlap geneTrim24, Svopl, Atp6v0a4, LOC100039657
Upstream geneDgki, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102
Downstream geneD630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064E11.bB6Ng01-064E11.g
ACCDH884111DH884112
length1,0931,101
definitionDH884111|Mus musculus domesticus DNA, BAC clone: B6Ng01-064E11, 5' end.DH884112|Mus musculus domesticus DNA, BAC clone: B6Ng01-064E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,042,723 - 38,043,811)(37,914,841 - 37,915,962)
sequence
gaattccacggccctgacctctggctaagatttctgatgaccctcaacaa
gtcctcctcccatgtcttttctggaagctttagcgcaagggctggatggt
agacatctccttgtctcaatccttgtaccacaaggatctccaatggatct
gggcaatgaatgcgtcgattactgatttccagtggatcagagaatgaatc
cagtgatcccaatggattccaatgagtccaatgaaagcagacagtctgtt
ttctctgactagtcagactagaggcagcacattctgtagtctgcagtttc
tagagacactgagttccagtgaagatattctaggaatggactgtctgggg
cattgcttcgcatgggccattatatctttgtcaagcttttactgagtgca
atttagaaaattagtcctttatttcctcagcaagctcccttgtgggagcc
tgtgtcactagttgttagcatagtcctcactaacattttaaagagttttt
atttttatcactttatcacatgtagacatgtgtgtctgtatgtgactgtg
tgcatgtgagtgagggtgctcacgaggccataggcgttgggtccgctgag
ttacatggctatgagctgcctcttgggtgctggaaacctaacaagcaaga
ctaacaagcactctaaaccgctgagccttgcctccagacccagtgtgaga
gttactcatggcaaaggtcgagttcttgatgatgacccggatgcactatg
tagacctgtacagtattcaaggtccctcatattcctgaccccactgaggt
gtgtgggaactggagggtgcaccttgcctataactcgtgtatcttgtgca
cagccataatcttattccgaagacccctcctagcaacagtctcccgcatc
aagaagatgatacagggttgaagccactggcagctgtggaatcctaatgt
aaacctgtggttccccttcctgcagctaaatgcaaatggtgacagcttcc
agaggaagtttgttaaatgaagtccgaaggtgtgagtcacctggaagaaa
acccggcgtaagctacctccccttactgcctaaatgtgaactg
gaattcaatgaggtgagatggggcgaggccacagcaatgtggagagtgat
cttaaccagacagcttgccagcagggaggtcccaaggtgtctgtgcaatg
ttgcgtgtctaccagggcatggcagagcttgctaaggaggcttatccaca
ctgagtttgcaaaggtttatgtgtggtaagtgcaaatccaagcctgcctg
aggctgagacagtgtagagtcaggatttatcattccttcctttgatttgc
aagctatgcatttttagactttgacttctgagtttatcttgaaatagtaa
ggatgtaccaaacagttctcagttaaaatctactcaattcactttatata
actgtgtcttttttgttcattgttgtttgttcttttgttgacgtttctca
tcctacccatgatcttcttgtcaccttgctggtgtgacccatccctgtca
caccactccttctggaaggagtcagtacaaagtgtaaccccagactagta
ttttgttttatcttagtgacatccctaagtacttttccaacagtccatta
caagtttcatagtcgtgtgcaaaataggaacagaattgtgagagattatt
tttattaacgaaacctgggtcttttgggtgttaattcctacctgtatttt
tatcccacagcctgattctgaaagtagccaatgctggtataaaacttgaa
agctattttgaagaacttctaaagaatctttatccagaaaaaaggtttcc
taaggtagaattcaggcatgaagcagaagactgtaagttcagtgacgact
cagacgatgactttgtacagccccggaagaagcgtctcaagagcaccgag
gatcgccagctgcttaagtacgccgcactgggccagcgcgctgtgctaga
gatttctcatcaaaactaaagacagcaaaggcttgtcagtgatctaaggg
tttgtgagctctctgctctgttttgctgttactggactttggtttctttc
taacccatttcttacctctggtcatgaaataaaaagaagaggaggaggaa
tgtggtccagaataaagaaggagagaggtagaaagagaaagcagaaggaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38042723_38043811
seq2: B6Ng01-064E11.b_47_1139 (reverse)

seq1  CAGTTCACATTTAGGCAGTAAGGGGGAGGTAGCTTACGCAGGATTCTC-T  49
      ||||||||||||||||||||| ||||||||||||||||| || || || |
seq2  CAGTTCACATTTAGGCAGTAA-GGGGAGGTAGCTTACGCCGGGTTTTCTT  49

seq1  CCA-GTGACTCACACCTTCGGACTTCA-TTCACAAACTTCCTCTGGAAGC  97
      ||| ||||||||||||||||||||||| || |||||||||||||||||||
seq2  CCAGGTGACTCACACCTTCGGACTTCATTTAACAAACTTCCTCTGGAAGC  99

seq1  TGTTCACATTTGCATTTAGCTGCAGGAAAGGGGAACCACAGGTTTACATT  147
      |||   |||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTCACCATTTGCATTTAGCTGCAGG-AAGGGGAACCACAGGTTTACATT  148

seq1  AGGATTCCACAGCTGCCAGTGGCTTCAACCCTGTATCATCTTCTTGATGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCCACAGCTGCCAGTGGCTTCAACCCTGTATCATCTTCTTGATGC  198

seq1  GGGAGACTGTTGCTAGGA-GTGTCTTCGGAAT-AGA-TATGGCTGTGCAC  244
      |||||||||||||||||| | ||||||||||| ||| |||||||||||||
seq2  GGGAGACTGTTGCTAGGAGGGGTCTTCGGAATAAGATTATGGCTGTGCAC  248

seq1  AAGATACACGAGTTATAGGCAAGGTGCACCCTCCAGTTCCCACACACCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACACGAGTTATAGGCAAGGTGCACCCTCCAGTTCCCACACACCTC  298

seq1  AGTGGGGTCAGGAATATGAGGGACCTTGAATACTGTACAGGTCTACATAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTCAGGAATATGAGGGACCTTGAATACTGTACAGGTCTACATAG  348

seq1  TGCATCCGGGTCATCATCAAGAACTCGACCTTTGCCATGAGTAACTCTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCGGGTCATCATCAAGAACTCGACCTTTGCCATGAGTAACTCTCA  398

seq1  CACTGGGTCTGGAGGCAAGGCTCAGCGGTTTAGAGTGCTTGTTAGTCTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTCTGGAGGCAAGGCTCAGCGGTTTAGAGTGCTTGTTAGTCTTG  448

seq1  CTTGTTAGGTTTCCAGCACCCAAGAGGCAGCTCATAGCCATGTAACTCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAGGTTTCCAGCACCCAAGAGGCAGCTCATAGCCATGTAACTCAG  498

seq1  CGGACCCAACGCCTATGGCCTCGTGAGCACCCTCACTCACATGCACACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCCAACGCCTATGGCCTCGTGAGCACCCTCACTCACATGCACACAG  548

seq1  TCACATACAGACACACATGTCTACATGTGATAAAGTGATAAAAATAAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACAGACACACATGTCTACATGTGATAAAGTGATAAAAATAAAAA  598

seq1  CTCTTTAAAATGTTAGTGAGGACTATGCTAACAACTAGTGACACAGGCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAAATGTTAGTGAGGACTATGCTAACAACTAGTGACACAGGCTC  648

seq1  CCACAAGGGAGCTTGCTGAGGAAATAAAGGACTAATTTTCTAAATTGCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGGAGCTTGCTGAGGAAATAAAGGACTAATTTTCTAAATTGCAC  698

seq1  TCAGTAAAAGCTTGACAAAGATATAATGGCCCATGCGAAGCAATGCCCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAAGCTTGACAAAGATATAATGGCCCATGCGAAGCAATGCCCCA  748

seq1  GACAGTCCATTCCTAGAATATCTTCACTGGAACTCAGTGTCTCTAGAAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCCATTCCTAGAATATCTTCACTGGAACTCAGTGTCTCTAGAAAC  798

seq1  TGCAGACTACAGAATGTGCTGCCTCTAGTCTGACTAGTCAGAGAAAACAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTACAGAATGTGCTGCCTCTAGTCTGACTAGTCAGAGAAAACAG  848

seq1  ACTGTCTGCTTTCATTGGACTCATTGGAATCCATTGGGATCACTGGATTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGCTTTCATTGGACTCATTGGAATCCATTGGGATCACTGGATTC  898

seq1  ATTCTCTGATCCACTGGAAATCAGTAATCGACGCATTCATTGCCCAGATC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGATCCACTGGAAATCAGTAATCGACGCATTCATTGCCCAGATC  948

seq1  CATTGGAGATCCTTGTGGTACAAGGATTGAGACAAGGAGATGTCTACCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAGATCCTTGTGGTACAAGGATTGAGACAAGGAGATGTCTACCAT  998

seq1  CCAGCCCTTGCGCTAAAGCTTCCAGAAAAGACATGGGAGGAGGACTTGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTTGCGCTAAAGCTTCCAGAAAAGACATGGGAGGAGGACTTGTT  1048

seq1  GAGGGTCATCAGAAATCTTAGCCAGAGGTCAGGGCCGTGGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCATCAGAAATCTTAGCCAGAGGTCAGGGCCGTGGAATTC  1093

seq1: chr6_37914841_37915962
seq2: B6Ng01-064E11.g_68_1168

seq1  GAATTCAATGAGGTGAGATGGGGCGAGGCCACAGCAATGTGGAGAGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAGGTGAGATGGGGCGAGGCCACAGCAATGTGGAGAGTGAT  50

seq1  CTTAACCAGACAGCTTGCCAGCAGGGAGGTCCCAAGGTGTCTGTGCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCAGACAGCTTGCCAGCAGGGAGGTCCCAAGGTGTCTGTGCAATG  100

seq1  TTGCGTGTCTACCAGGGCATGGCAGAGCTTGCTAAGGAGGCTTATCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTGTCTACCAGGGCATGGCAGAGCTTGCTAAGGAGGCTTATCCACA  150

seq1  CTGAGTTTGCAAAGGTTTATGTGTGGTAAGTGCAAATCCAAGCCTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGCAAAGGTTTATGTGTGGTAAGTGCAAATCCAAGCCTGCCTG  200

seq1  AGGCTGAGACAGTGTAGAGTCAGGATTTATCATTCCTTCCTTTGATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGACAGTGTAGAGTCAGGATTTATCATTCCTTCCTTTGATTTGC  250

seq1  AAGCTATGCATTTTTAGACTTTGACTTCTGAGTTTATCTTGAAATAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGCATTTTTAGACTTTGACTTCTGAGTTTATCTTGAAATAGTAA  300

seq1  GGATGTACCAAACAGTTCTCAGTTAAAATCTACTCAATTCACTTTATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTACCAAACAGTTCTCAGTTAAAATCTACTCAATTCACTTTATATA  350

seq1  ACTGTGTCTTTTTTGTTCATTGTTGTTTGTTCTTTTGTTGACGTTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTTTTTTGTTCATTGTTGTTTGTTCTTTTGTTGACGTTTCTCA  400

seq1  TCCTACCCATGATCTTCTTGTCACCTTGCTGGTGTGACCCATCCCTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCATGATCTTCTTGTCACCTTGCTGGTGTGACCCATCCCTGTCA  450

seq1  CACCACTCCTTCTGGAAGGAGTCAGTACAAAGTGTAACCCCAGACTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCCTTCTGGAAGGAGTCAGTACAAAGTGTAACCCCAGACTAGTA  500

seq1  TTTTGTTTTATCTTAGTGACATCCCTAAGTACTTTTCCAACAGTCCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTATCTTAGTGACATCCCTAAGTACTTTTCCAACAGTCCATTA  550

seq1  CAAGTTTCATAGTCGTGTGCAAAATAGGAACAGAATTGTGAGAGATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCATAGTCGTGTGCAAAATAGGAACAGAATTGTGAGAGATTATT  600

seq1  TTTATTAACGAAACCTGGGTCTTTTGGGTGTTAATTCCTACCTGTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAACGAAACCTGGGTCTTTTGGGTGTTAATTCCTACCTGTATTTT  650

seq1  TATCCCACAGCCTGATTCTG-AAGTAGCCAATGCTGGTATAAAACTTGAA  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATCCCACAGCCTGATTCTGAAAGTAGCCAATGCTGGTATAAAACTTGAA  700

seq1  AGCTATTTTGAAGAACTTCTAAAGAATCTTTATCCAGAAAAAAGGTTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTTGAAGAACTTCTAAAGAATCTTTATCCAGAAAAAAGGTTTCC  750

seq1  TAAGGTAGAATTCAGGCATGAAGCAGAAGACTGTAAGTTCAGTGACGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGAATTCAGGCATGAAGCAGAAGACTGTAAGTTCAGTGACGACT  800

seq1  CAGACGATGACTTTGTACAGCCCCGGAAGAAGCGTCTCAAGAGCACCGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGATGACTTTGTACAGCCCCGGAAGAAGCGTCTCAAGAGCACCGAG  850

seq1  GATCGCCAGCTGCTTAAGTAACGCCGCACTGGGCCAGCGCGCTGTGCTAG  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATCGCCAGCTGCTTAAGT-ACGCCGCACTGGGCCAGCGCGCTGTGCTAG  899

seq1  AGATTTCTCATCAAAACTAAAGACAGCAAAAGGCTTGTCAGTGATCTAAG  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGATTTCTCATCAAAACTAAAGACAGC-AAAGGCTTGTCAGTGATCTAAG  948

seq1  GGTTTGTGAGCTCTCTGCTCTGTTTTTGCTGTTTACTGGACTTTGGTTTC  999
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  GGTTTGTGAGCTCTCTGCTCTG-TTTTGCTG-TTACTGGACTTTGGTTTC  996

seq1  TTTCATAACCCATTTCTTTAACCTCTTGTCAATGAAAATAAAAAGAAGAG  1049
      |||| |||||||||||||  |||||| ||| ||| |||||||||||||||
seq2  TTTC-TAACCCATTTCTT--ACCTCTGGTC-ATG-AAATAAAAAGAAGAG  1041

seq1  GAAGGAAGGAAATGTGTACAAGAATAAAAGAAGGAAGAGAAGGTAGAAAA  1099
      | ||||  | ||||||  | ||||| |||||||| |||| ||||||||| 
seq2  G-AGGA--GGAATGTGGTCCAGAAT-AAAGAAGG-AGAG-AGGTAGAAAG  1085

seq1  AGAAGAAAGAGCAAAGAAGGAAA  1122
      ||||     |||  |||||||||
seq2  AGAA-----AGC--AGAAGGAAA  1101