BAC Information

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BAC

Clone NameB6Ng01-064E23
Chromosome6 (Build37)
Map Location 72,617,729 - 72,769,964
singlet/doubletdoublet
Overlap geneTcf3
Upstream geneLOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064E23.bB6Ng01-064E23.g
ACCDH884135DH884136
length1,086333
definitionDH884135|Mus musculus domesticus DNA, BAC clone: B6Ng01-064E23, 5' end.DH884136|Mus musculus domesticus DNA, BAC clone: B6Ng01-064E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,617,729 - 72,618,839)(72,769,632 - 72,769,964)
sequence
gaattcacttttgtaaagcagacatctttatatgtgaattgaagatctac
gcggacagataggaggatgtgggttcttctactggaccagcgggcggggt
cagtttgttattcctccgacatcagagttgcctagaggagctatgaaccc
acagatttccaaccctcctcccctgccactcaactgttccagggcagggc
cctaaccttctgcctcatttaatggctccccaggtgacgtcaatgtgagg
tcagagctgtccctacatgtgccaccatgtgctcaccactgagctacaaa
gctccccaccaccgccctccaatcccatactcagcttctcctgcttctct
tttatcccctagagcaagcatccatccaaccaccgggcacttttcagtgc
tacagtataccagcttctacagtctttacctgtctaagtctctccagagt
attagaaggcttggtgtagaagtttctggtacataagggaaaatccatat
ccccagagcagccctcaccggatcttataaataaactctcagattaggca
gcagacacccactctgggattcctggtggcacattaggaagaccatcaaa
accaattatttcttgaacattcctaatggtgtcaacacattcctctttat
tttggggctgagagaagggctgcagtgcctcctcctagctctccaaccaa
atccaggctaggtctttctggaattcgagacatcctggctcagctcgaag
ggtacatttctgaacacactctcaaagcgcatctcggatttcacattgct
tcttgagtgaccctggtagcccatcagttctaggtgcagcctgtgtttga
gactgggtatgaagctcagtctataagcagctatttgggaccagactgaa
agtgaccatgtcgttcggtaccatatctgctatcaagacgtacatctctg
ccacttcttcatgggctatcgttctagctaagactttgaatagacgactg
ctggatgaaagctctgcagcactcaacaagagctgagctccttggccaaa
tctcccttggattccatgattttccatgtctgtgta
actctgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcc
tcccaagtgctgggatcaaagacgttcaccaccactgtccagcctgtctc
atacttgtaatgtagtcagtgacttctgatcttcctgcctgtactaccag
agtgctgggattaaaggcctgtatcactatgcccagatttacgtggccca
ggggtctgtatactaggcaaacagtcgaccaaacaagccacatatacagc
tccctttccaaaatgtctgtcaaaatgtagtcaccagccgggcagtggtg
gctcacacctttaatcccaccagcactcgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72617729_72618839
seq2: B6Ng01-064E23.b_50_1135

seq1  GAATTCACTTTTGTAAAGCAGACATCTTTATATGTGAATTGAAGATCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTGTAAAGCAGACATCTTTATATGTGAATTGAAGATCTAC  50

seq1  GCGGACAGATAGGAGGATGTGGGTTCTTCTACTGGACCAGCGGGCGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGACAGATAGGAGGATGTGGGTTCTTCTACTGGACCAGCGGGCGGGGT  100

seq1  CAGTTTGTTATTCCTCCGACATCAGAGTTGCCTAGAGGAGCTATGAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTATTCCTCCGACATCAGAGTTGCCTAGAGGAGCTATGAACCC  150

seq1  ACAGATTTCCAACCCTCCTCCCCTGCCACTCAACTGTTCCAGGGCAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTCCAACCCTCCTCCCCTGCCACTCAACTGTTCCAGGGCAGGGC  200

seq1  CCTAACCTTCTGCCTCATTTAATGGCTCCCCAGGTGACGTCAATGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCTTCTGCCTCATTTAATGGCTCCCCAGGTGACGTCAATGTGAGG  250

seq1  TCAGAGCTGTCCCTACATGTGCCACCATGTGCTCACCACTGAGCTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTGTCCCTACATGTGCCACCATGTGCTCACCACTGAGCTACAAA  300

seq1  GCTCCCCACCACCGCCCTCCAATCCCATACTCAGCTTCTCCTGCTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCACCACCGCCCTCCAATCCCATACTCAGCTTCTCCTGCTTCTCT  350

seq1  TTTATCCCCTAGAGCAAGCATCCATCCAACCACCGGGCACTTTTCAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCCTAGAGCAAGCATCCATCCAACCACCGGGCACTTTTCAGTGC  400

seq1  TACAGTATACCAGCTTCTACAGTCTTTACCTGTCTAAGTCTCTCCAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATACCAGCTTCTACAGTCTTTACCTGTCTAAGTCTCTCCAGAGT  450

seq1  ATTAGAAGGCTTGGTGTAGAAGTTTCTGGTACATAAGGGAAAATCCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGGCTTGGTGTAGAAGTTTCTGGTACATAAGGGAAAATCCATAT  500

seq1  CCCCAGAGCAGCCCTCACCGGATCTTATAAATAAACTCTCAGATTAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGCAGCCCTCACCGGATCTTATAAATAAACTCTCAGATTAGGCA  550

seq1  GCAGACACCCACTCTGGGATTCCTGGTGGCACATTAGGAAGACCATCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACCCACTCTGGGATTCCTGGTGGCACATTAGGAAGACCATCAAA  600

seq1  ACCAATTATTTCTTGAACATTCCTAATGGTGTCAACACATTCCTCTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTATTTCTTGAACATTCCTAATGGTGTCAACACATTCCTCTTTAT  650

seq1  TTTGGGGCTGAGAGAAGGGCTGCAGTGCCTCCTCCTAGCTCTCCAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGCTGAGAGAAGGGCTGCAGTGCCTCCTCCTAGCTCTCCAACCAA  700

seq1  ATCCAGGGCTAGGTCTTTCTGGAATTCGAGACATCCTGGCTCAGCTCGAA  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCA-GGCTAGGTCTTTCTGGAATTCGAGACATCCTGGCTCAGCTCGAA  749

seq1  GGGTACATTTCTGAACACACTCTCAAAAGCGCATCTCGGATTTCACATTG  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGTACATTTCTGAACACACTCTC-AAAGCGCATCTCGGATTTCACATTG  798

seq1  CTTCTTGAGTGACCCTGGTAGCCCATCAGTTCTAGGTGCAGCCTGTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGAGTGACCCTGGTAGCCCATCAGTTCTAGGTGCAGCCTGTGTTT  848

seq1  GAGACTGGGTATGAAGCTCAGTCTATAAGCAGCTATTTGGGACCAAGACT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGACTGGGTATGAAGCTCAGTCTATAAGCAGCTATTTGGGACC-AGACT  897

seq1  GAAAAGTGACCATGTCGTTCAGGTACCATATCTGCTTATCCAAAGACGTT  950
      | |||||||||||||||||| |||||||||||||| ||||  |||||| |
seq2  G-AAAGTGACCATGTCGTTC-GGTACCATATCTGC-TATC--AAGACG-T  941

seq1  ACATCTCTGCCACTTCCTTCATGGGGCTATCGTTCCTAGCTACAGACTTT  1000
      ||||||||||||||| |||||| ||||||||||| ||||||| |||||||
seq2  ACATCTCTGCCACTT-CTTCAT-GGGCTATCGTT-CTAGCTA-AGACTTT  987

seq1  GAAATAGAACGACTGCCTTGGATGACAGCTCTGCCAGCACCACACAAGAG  1050
      | ||||| ||||||||  ||||||| ||||||| ||||||   |||||| 
seq2  G-AATAG-ACGACTGC--TGGATGAAAGCTCTG-CAGCACTCAACAAGA-  1031

seq1  GCTTGAAGCTCACTGGCCAAATTCTCCATCTGATTCCCATTGATTTTCCA  1100
      |||   |||||  |||||||| ||||| |  ||||||   ||||||||||
seq2  GCT--GAGCTCCTTGGCCAAA-TCTCCCTTGGATTCC--ATGATTTTCCA  1076

seq1  TGTTCTGTGTA  1111
      || ||||||||
seq2  TG-TCTGTGTA  1086

seq1: chr6_72769632_72769964
seq2: B6Ng01-064E23.g_71_403 (reverse)

seq1  CTCCCGAGTGCTGGTGGGATTAAAGGTGTGAGCCACCACTGCCCGGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGAGTGCTGGTGGGATTAAAGGTGTGAGCCACCACTGCCCGGCTGG  50

seq1  TGACTACATTTTGACAGACATTTTGGAAAGGGAGCTGTATATGTGGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACATTTTGACAGACATTTTGGAAAGGGAGCTGTATATGTGGCTTG  100

seq1  TTTGGTCGACTGTTTGCCTAGTATACAGACCCCTGGGCCACGTAAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCGACTGTTTGCCTAGTATACAGACCCCTGGGCCACGTAAATCTG  150

seq1  GGCATAGTGATACAGGCCTTTAATCCCAGCACTCTGGTAGTACAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGTGATACAGGCCTTTAATCCCAGCACTCTGGTAGTACAGGCAGG  200

seq1  AAGATCAGAAGTCACTGACTACATTACAAGTATGAGACAGGCTGGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGAAGTCACTGACTACATTACAAGTATGAGACAGGCTGGACAGT  250

seq1  GGTGGTGAACGTCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAACGTCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGCAGAT  300

seq1  TTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT  333
      |||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT  333