BAC Information

Click to search

BAC

Clone NameB6Ng01-064H19
Chromosome6 (Build37)
Map Location 61,105,855 - 61,239,681
singlet/doubletdoublet
Overlap geneLOC100041764
Upstream geneEG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756
Downstream geneC130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064H19.bB6Ng01-064H19.g
ACCDH884261DH884262
length1,08479
definitionDH884261|Mus musculus domesticus DNA, BAC clone: B6Ng01-064H19, 5' end.DH884262|Mus musculus domesticus DNA, BAC clone: B6Ng01-064H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,238,570 - 61,239,681)(61,105,855 - 61,105,933)
sequence
gaattctctgggtagcgttggctgtcttggaactcactctgtaaactagg
ctggtcttgaacttagaaatcttcctgcttctgcttcccaagtgccagga
ttaaaggtgtgcaccaccatagcctggttcatgtctttattttataaatg
agaaaatttctaagagttacctcgaatatatttcttctgcagtggtcttg
acttttatttgtattgatagttttatgtatgcttaccaatcacttatcaa
ttcatttatagtttgtaaacatatgttccctacctaaaatcactgttttt
ccacctgtagtgatcctctaacactggtctatttttttgtttgtatgttt
tattttattttgttttgttttgttttttcccgagatcagggtttctctgc
atagccctggctgtcctagaacttactctgtagaacaggctgtcattgaa
ctcagaaacccgcctgcctctgcttcccaagtgctgggattaaaggcgtg
tgccaccactgcctagcccatactgtggtgtcctcgtttacttttattcc
tggaaaatactaatcaaaggcaacttgtgaaagaaaaaggtttccttgct
ttataagttacaggccatgagggaaaactggcaggaacttaagtacaagc
catggaaaaatacggctcactgacttatttcctttagtttatttaactag
tcttcttataccctccagatccatctggccaagttggcactgcccataga
cttcttggtccttctacatcaattagaaatcaagaaaatgccctacagat
ttacttatgagacaatctactagaggcaattgctcaattgaggttacttc
ttataaggtatggcaaattgtcactgaagctactgtgacagcagtatata
ctttgataacactgcttctactctttctcaaatctatatatctctattgc
tttggaggagaagagctgtgataataatttataacaatataatataatta
ctggaaatgtagtatggctcaacctcacattctatttgtagctttattca
ggctggacaacaatggcagtgcttgactatgcta
ctgccctggaggccagtctttgcattcaacaggaagcagtattattaaaa
ggcttttgggggtgggggtggggttgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61238570_61239681
seq2: B6Ng01-064H19.b_44_1127 (reverse)

seq1  TAGCATAGATCAAAGCAACTGCCATTGTTGTCCAGCCCTGAATTAAAGCT  50
      |||||||| || |||| |||||||||||||||||| |||||| |||||| 
seq2  TAGCATAG-TC-AAGC-ACTGCCATTGTTGTCCAG-CCTGAA-TAAAGC-  44

seq1  TACAGATGAAATGTGAAGGTTTGAGCCATACTACATTTTCAGTAAATTAT  100
      |||| ||  |||||||  | |||||||||||||||||| |||| ||||||
seq2  TACAAATAGAATGTGA--GGTTGAGCCATACTACATTTCCAGT-AATTAT  91

seq1  ATTTATATATGTTATAAATTATATAATCAACAGCTCTTCTCCTCCAAAGC  150
      | |||||| ||||||||||  ||| ||| |||||||||||||||||||||
seq2  A-TTATAT-TGTTATAAAT--TATTATC-ACAGCTCTTCTCCTCCAAAGC  136

seq1  AATAGAGAATTAATTATAGGATTTTGAGAAAGAGTAGAAGGCAGTGTTTA  200
      ||||||||  ||  |||||   ||||||||||||||||| |||||| |||
seq2  AATAGAGA--TA--TATAG--ATTTGAGAAAGAGTAGAA-GCAGTG-TTA  178

seq1  TCAAAAGTATATTACTTGCTGTCACAGTTAGCTTCAGTTGACAATTTGCC  250
      || |||||||| ||| ||||||||||| ||||||||| ||||||||||||
seq2  TC-AAAGTATA-TAC-TGCTGTCACAG-TAGCTTCAG-TGACAATTTGCC  223

seq1  ATACCTTATAAGAAGTAACCTCAATTGAGCAATTGCCTCTAGTAGATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTATAAGAAGTAACCTCAATTGAGCAATTGCCTCTAGTAGATTGT  273

seq1  CTCATAAGTAAATCTGTAGGGCATTTTCTTGATTTCTAATTGATGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAGTAAATCTGTAGGGCATTTTCTTGATTTCTAATTGATGTAGAA  323

seq1  GGACCAAGAAGTCTATGGGCAGTGCCAACCTTGGCCAGATGGATCTGGAG  400
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGACCAAGAAGTCTATGGGCAGTGCCAA-CTTGGCCAGATGGATCTGGAG  372

seq1  GGTATAAGAAGACTAGTTAAATAAACTAAAGGAAATAAGTCAGTGAGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGAAGACTAGTTAAATAAACTAAAGGAAATAAGTCAGTGAGCCG  422

seq1  TATTTTTCCATGGCTTGTACTTAAGTTCCTGCCAGTTTTCCCTCATGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCATGGCTTGTACTTAAGTTCCTGCCAGTTTTCCCTCATGGCC  472

seq1  TGTAACTTATAAAGCAAGGAAACCTTTTTCTTTCACAAGTTGCCTTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTATAAAGCAAGGAAACCTTTTTCTTTCACAAGTTGCCTTTGAT  522

seq1  TAGTATTTTCCAGGAATAAAAGTAAACGAGGACACCACAGTATGGGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTTCCAGGAATAAAAGTAAACGAGGACACCACAGTATGGGCTAG  572

seq1  GCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGG  622

seq1  CGGGTTTCTGAGTTCAATGACAGCCTGTTCTACAGAGTAAGTTCTAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTCTGAGTTCAATGACAGCCTGTTCTACAGAGTAAGTTCTAGGAC  672

seq1  AGCCAGGGCTATGCAGAGAAACCCTGATCTCGGGAAAAAACAAAACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTATGCAGAGAAACCCTGATCTCGGGAAAAAACAAAACAAAA  722

seq1  CAAAATAAAATAAAACATACAAACAAAAAAATAGACCAGTGTTAGAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAATAAAACATACAAACAAAAAAATAGACCAGTGTTAGAGGAT  772

seq1  CACTACAGGTGGAAAAACAGTGATTTTAGGTAGGGAACATATGTTTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGGTGGAAAAACAGTGATTTTAGGTAGGGAACATATGTTTACAA  822

seq1  ACTATAAATGAATTGATAAGTGATTGGTAAGCATACATAAAACTATCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAATGAATTGATAAGTGATTGGTAAGCATACATAAAACTATCAAT  872

seq1  ACAAATAAAAGTCAAGACCACTGCAGAAGAAATATATTCGAGGTAACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAAGTCAAGACCACTGCAGAAGAAATATATTCGAGGTAACTCT  922

seq1  TAGAAATTTTCTCATTTATAAAATAAAGACATGAACCAGGCTATGGTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTTCTCATTTATAAAATAAAGACATGAACCAGGCTATGGTGGT  972

seq1  GCACACCTTTAATCCTGGCACTTGGGAAGCAGAAGCAGGAAGATTTCTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTTTAATCCTGGCACTTGGGAAGCAGAAGCAGGAAGATTTCTAA  1022

seq1  GTTCAAGACCAGCCTAGTTTACAGAGTGAGTTCCAAGACAGCCAACGCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGACCAGCCTAGTTTACAGAGTGAGTTCCAAGACAGCCAACGCTA  1072

seq1  CCCAGAGAATTC  1112
      ||||||||||||
seq2  CCCAGAGAATTC  1084

seq1: chr6_61105855_61105933
seq2: B6Ng01-064H19.g_73_151

seq1  CTGCCCTGGAGGCCAGTCTTTGCATTCAACAGGAAGCAGTATTATTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGGAGGCCAGTCTTTGCATTCAACAGGAAGCAGTATTATTAAAA  50

seq1  GGCTTTTGGGGGTGGGGGTGGGGTTGAGA  79
      |||||||||||||||||||||||||||||
seq2  GGCTTTTGGGGGTGGGGGTGGGGTTGAGA  79