BAC Information

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BAC

Clone NameB6Ng01-064K08
Chromosome6 (Build37)
Map Location 99,408,172 - 99,573,113
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp, Shq1, LOC625221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064K08.bB6Ng01-064K08.g
ACCDH884367DH884368
length982851
definitionDH884367|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K08, 5' end.DH884368|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,572,134 - 99,573,113)(99,408,172 - 99,409,022)
sequence
gaattctttcattaatctgctgaggccacaattcttcatccttcatggtg
ctgacaagactctcaattttaaagagatcccaaggacacagaatttgaga
gtggaagggacctttgagatcatccggcagtgtgtcttgactgcttagtg
ggcagaaggaccactgtggccctagcttatcaagcatgttccctggctgc
cccctgcagctttgggcgtctgcattgtgagctagcaccctataactcta
atgaaggccttgaggccttaagactttgagaacctgcaattatatccaac
ttctgcatactaccggtgaggacacccacccaagctctccaagataccct
gatagcagggttatcacaccaacagtcctaaaaaaaaatcactactcaaa
gggaagataaaaataagaacgttatagctaggaacacagtgatagagccg
tggttcttctcttttctaaataacattctagcctgttaagagaagaaaaa
ttaatgttcagaaaaaagtagctactccatatgtgcagtaactacttttc
tataatgtcttatggcatctggggttcagcatcattgaacaagattaaat
gaatgttacagagctataaaagcgcatgtaaaataccgcaaaactgttcg
gaggactatcaaagtagcctgggaatgagttcccactaaaattaattgtc
actttctaaacgtagcttagccaagctgttactaaactggagggagtctt
taatacatacaagtgttaaaaaggaatcagataggcgctccccagagcat
gtggatgggaggcagaggtcatcgggaagtcagtacgttttgtccatcat
tgctggctgaaattatagtctcattgtatctggtgtgtgtcagatgtggc
taatagaaatatccaataaactgacctttggatattctattgtctggtgt
ccttctgaaatcatggggttataggatgtgtg
catctccttatttcccttcaagaacacatgatcctggttctttttctaga
caacaaaattcaccagaatgaaatatagtcttctgttctttcatttatag
tcactcgacaaatatggaaaaagcacctacccaggttccatggagggtgg
gtctgtcaaagctgcccccaaccccaggaaatccaaataactccgttatt
ggttctagaaaaatatggcttcctgatttctatgtgcagccaggcactct
aatgggtccagagaaaatgacccattcttgaatacacggcttcaggttgt
caaaatagggttaaaaaattacacattggccaaaaatattacattacaat
gaaggtggtctgccaaaaggaggatgggggtagagacacataggcaaagc
cagttgacagtcataaggcagcagcaagccagagtccatacacattcggt
gcaaagggacagtaataaccgcatgctttcaaatgatggaaacgctgtcg
tgttatgtgtgacatgagctaaataagtaacaaggcaagaatggatctac
catcgcccaggggtttcctgggtttagtaggcaaactggcaacaggaatt
atattatcaagtactaccctgtgccacttttatttaactgtcagggcaat
gtctattatgagtgtcagtgggaagatactgatcttaccactgccagagc
aacttgggccaatctaacagaaatgcttcgcccagaaacacaccctgcct
tccaggaacactgagctgtgatgccccctctccttaaaatgagtcttggg
agatagttcattgattaaaacaccagctgcttcacaaagaactagtttca
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99572134_99573113
seq2: B6Ng01-064K08.b_33_1014 (reverse)

seq1  CACACATTCCTATAACCCCATGATTTCAGAAGGACA-CAGAGCATAGAAT  49
      |||||| ||||||||||||||||||||||||||||| ||||  |||||||
seq2  CACACA-TCCTATAACCCCATGATTTCAGAAGGACACCAGACAATAGAAT  49

seq1  ATCCAAAGGTCAGTTTATTGGATA-TTCTAATAAGCACATCTGACACACA  98
      |||||||||||||||||||||||| ||||| ||  |||||||||||||||
seq2  ATCCAAAGGTCAGTTTATTGGATATTTCTATTAGCCACATCTGACACACA  99

seq1  -CAGATACAATGAGACTATAAATTTCAG-CAGCAATGATGGACAAAACGT  146
       |||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  CCAGATACAATGAGACTAT-AATTTCAGCCAGCAATGATGGACAAAACGT  148

seq1  ACTGACTTCACGATGACCTCTGCCTCCCATCCACATGCTCTGGGGAGCGC  196
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTCCCGATGACCTCTGCCTCCCATCCACATGCTCTGGGGAGCGC  198

seq1  CTATCTGATTCCTTTTTAACACTTGTATGTATTAAAGACTCCCTCCAGTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTCCTTTTTAACACTTGTATGTATTAAAGACTCCCTCCAGTT  248

seq1  TAGTAACAGCTTGGCTAAGCTACGTTTAGAAAGTGACAATTAATTTTAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACAGCTTGGCTAAGCTACGTTTAGAAAGTGACAATTAATTTTAGT  298

seq1  GGGAACTCATTCCCAGGCTACTTTGATAGTCCTCCGAACAGTTTTGCGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCATTCCCAGGCTACTTTGATAGTCCTCCGAACAGTTTTGCGGT  348

seq1  ATTTTACATGCGCTTTTATAGCTCTGTAACATTCATTTAATCTTGTTCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATGCGCTTTTATAGCTCTGTAACATTCATTTAATCTTGTTCAA  398

seq1  TGATGCTGAACCCCAGATGCCATAAGACATTATAGAAAAGTAGTTACTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGAACCCCAGATGCCATAAGACATTATAGAAAAGTAGTTACTGC  448

seq1  ACATATGGAGTAGCTACTTTTTTCTGAACATTAATTTTTCTTCTCTTAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGAGTAGCTACTTTTTTCTGAACATTAATTTTTCTTCTCTTAAC  498

seq1  AGGCTAGAATGTTATTTAGAAAAGAGAAGAACCACGGCTCTATCACTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAATGTTATTTAGAAAAGAGAAGAACCACGGCTCTATCACTGTG  548

seq1  TTCCTAGCTATAACGTTCTTATTTTTATCTTCCCTTTGAGTAGTGATTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCTATAACGTTCTTATTTTTATCTTCCCTTTGAGTAGTGATTTT  598

seq1  TTTTTAGGACTGTTGGTGTGATAACCCTGCTATCAGGGTATCTTGGAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGACTGTTGGTGTGATAACCCTGCTATCAGGGTATCTTGGAGAG  648

seq1  CTTGGGTGGGTGTCCTCACCGGTAGTATGCAGAAGTTGGATATAATTGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGGGTGTCCTCACCGGTAGTATGCAGAAGTTGGATATAATTGCA  698

seq1  GGTTCTCAAAGTCTTAAGGCCTCAAGGCCTTCATTAGAGTTATAGGGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAAAGTCTTAAGGCCTCAAGGCCTTCATTAGAGTTATAGGGTGC  748

seq1  TAGCTCACAATGCAGACGCCCAAAGCTGCAGGGGGCAGCCAGGGAACATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCACAATGCAGACGCCCAAAGCTGCAGGGGGCAGCCAGGGAACATG  798

seq1  CTTGATAAGCTAGGGCCACAGTGGTCCTTCTGCCCACTAAGCAGTCAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAAGCTAGGGCCACAGTGGTCCTTCTGCCCACTAAGCAGTCAAGA  848

seq1  CACACTGCCGGATGATCTCAAAGGTCCCTTCCACTCTCAAATTCTGTGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCCGGATGATCTCAAAGGTCCCTTCCACTCTCAAATTCTGTGTC  898

seq1  CTTGGGATCTCTTTAAAATTGAGAGTCTTGTCAGCACCATGAAGGATGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATCTCTTTAAAATTGAGAGTCTTGTCAGCACCATGAAGGATGAA  948

seq1  GACTTCTGGCCTCAGCAGATTAATGAAAGAATTC  980
      || || ||||||||||||||||||||||||||||
seq2  GAATTGTGGCCTCAGCAGATTAATGAAAGAATTC  982

seq1: chr6_99408172_99409022
seq2: B6Ng01-064K08.g_83_932

seq1  CATCTCCTTATTTCCCTTCAAGAACACATGATCCTGGTTCTTTTTCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTTATTTCCCTTCAAGAACACATGATCCTGGTTCTTTTTCTAGA  50

seq1  CAACAAAATTCACCAGAATGAAATATAGTCTTCTGTTCTTTCATTTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATTCACCAGAATGAAATATAGTCTTCTGTTCTTTCATTTATAG  100

seq1  TCACTCGACAAATATGGAAAAAGCACCTACCCAGGTTCCATGGAGGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCGACAAATATGGAAAAAGCACCTACCCAGGTTCCATGGAGGGTGG  150

seq1  GTCTGTCAAAGCTGCCCCCAACCCCAGGAAATCCAAATAACTCCGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCAAAGCTGCCCCCAACCCCAGGAAATCCAAATAACTCCGTTATT  200

seq1  GGTTCTAGAAAAATATGGCTTCCTGATTTCTATGTGCAGCCAGGCACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGAAAAATATGGCTTCCTGATTTCTATGTGCAGCCAGGCACTCT  250

seq1  AATGGGTCCAGAGAAAATGACCCATTCTTGAATACACGGCTTCAGGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTCCAGAGAAAATGACCCATTCTTGAATACACGGCTTCAGGTTGT  300

seq1  CAAAATAGGGTTAAAAAATTACACATTGGCCAAAAATATTACATTACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGGGTTAAAAAATTACACATTGGCCAAAAATATTACATTACAAT  350

seq1  GAAGGTGGTCTGCCAAAAGGAGGATGGGGGTAGAGACACATAGGCAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGTCTGCCAAAAGGAGGATGGGGGTAGAGACACATAGGCAAAGC  400

seq1  CAGTTGACAGTCATAAGGCAGCAGCAAGCCAGAGTCCATACACATTCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACAGTCATAAGGCAGCAGCAAGCCAGAGTCCATACACATTCGGT  450

seq1  GCAAAGGGACAGTAATAACCGCATGCTTTCAAATGATGGAAACGCTGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGACAGTAATAACCGCATGCTTTCAAATGATGGAAACGCTGTCG  500

seq1  TGTTATGTGTGACATGAGCTAAATAAGTAACAAGGCAAGAATGGATCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTGTGACATGAGCTAAATAAGTAACAAGGCAAGAATGGATCTAC  550

seq1  CATCGCCCAGGGGTTTCCTGGGTTTAGTAGGCAAACTGGCAACAGGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCCCAGGGGTTTCCTGGGTTTAGTAGGCAAACTGGCAACAGGAATT  600

seq1  ATATTATCAAGTACTACCCTGTGCCACTTT--ATTAACTGTCAGGGCAAT  648
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  ATATTATCAAGTACTACCCTGTGCCACTTTTATTTAACTGTCAGGGCAAT  650

seq1  GTCTATTATGAGTGTCAGTGGGAAGATACTGATCTTACCACTGCCAGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTATGAGTGTCAGTGGGAAGATACTGATCTTACCACTGCCAGAGC  700

seq1  AACTT-GGCCAATCAAACAGAAATGCTTCGCCCAG-AACACACCCGGCCT  746
      ||||| |||||||| |||||||||||||||||||| ||||||||| ||||
seq2  AACTTGGGCCAATCTAACAGAAATGCTTCGCCCAGAAACACACCCTGCCT  750

seq1  TCCAGGAACACTGAGCTGTGATGCCACCTCTCCTTAAGAATGAGTCTTGG  796
      ||||||||||||||||||||||||| ||||||||||| |||||||||| |
seq2  TCCAGGAACACTGAGCTGTGATGCCCCCTCTCCTTAA-AATGAGTCTT-G  798

seq1  GGAGATAGTTCAGTGATTAACAGCACCAGCTGCTCGACCAAAGGACCTAG  846
      |||||||||||| ||||||| | |||||||||||  ||  || || ||||
seq2  GGAGATAGTTCATTGATTAA-AACACCAGCTGCTTCAC--AAAGAACTAG  845

seq1  TTTCA  851
      |||||
seq2  TTTCA  850