BAC Information

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BAC

Clone NameB6Ng01-065G24
Chromosome6 (Build37)
Map Location 46,327,756 - 46,446,931
singlet/doubletdoublet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065G24.bB6Ng01-065G24.g
ACCDH884912DH884913
length9821,118
definitionDH884912|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G24, 5' end.DH884913|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,327,756 - 46,328,748)(46,445,809 - 46,446,931)
sequence
gaattcaccttttccttctcccatcccaatttctgcttttccacaaggca
ggatgatctattaagaaccaaggcagctgctaaaggttttgtctgaaaaa
cctcaatccaaacatatatactattcagcaacttccattcacaggatcgc
tgcattccaccttcctctgcctcagtgcagagtccttgtttctgagaaac
cccaggaactgtccaagtcctgatttgaaaaccttctgtttaatccttcc
cacgtctataaaaagtacaaaatgcaatcacttctcatgttaagactctt
caagaagtcaaccaagattgtcaacataaaatctgagaaatagacatctc
ttcacacctgcatctacctgttacttcatctccaacacatcccacttgct
acatcgaagatgaacatcttttgatgcttcctacaagccttggcatggaa
cataatgcttcctattctctttctaactaattaattctgacatggtcctc
attacctagtctcatatatttcaggaagcatactagcatctctgtgattc
aggacaccaccctctgttcccctcagcagggaacacagaccttgtcagtg
agagagaaatgtagatttatggtctatttttaaaccaaaccaccacagga
aaagagatgctgcagacattcagcagatgcttgacatacgacaaaatggg
gctccatacatacccatcttgatacccccaaactacagtaggaatttttt
tcacacacaaaaaaaatggaactgaactttggctaaaccttcaggcaaac
cttcttttgtttctttcctttctggtcactggctccctcaatctacatca
agtaacagaaatctgatatcagtaaacataataactcttaggagagtgaa
gttcaatctccaccacgtatcagtcatgtaaatgctttctcacttacgtt
ggagaagggaggcagcatatgcagtaagacat
gaattcatagaatcatggttcttgtcactcaatggcaggatattttattt
agcaatttgatggacataagattcacttgcaccttcatcagcaaagcaaa
gttgttgggtttgaataatccctcagtccacaacaggcatgccctgcctg
cctatgatggtgcagccatacattcatcaataggaaataaattctcactt
actgtagaattggatttttcagtagctcatcttagaagtaaccttcactg
gctatgatgaatgttttgtcaccttaggtacaatgtccagtcttataaat
gacaaatcctggttgtaaaagtgatggaattgcagagtggattttgcata
agagattattctagctgatctacatgatttccttccgtggttaggaatcc
tagagggaaggttgaaaacatccttcagaagacactttacttatagctgg
ctgctgtatctccacctaagtgtcccactttgttcctcttgaggatgagc
ctcattttgaatttgcctagttagccttcacaattccataagccagaacc
tggcagtaaatctccttccctggttctgtgcctggatgaagatgaagcaa
tagctctttgtaatagtggtctagattcccctaccggtgccagcccaaag
attcctagccttccctcctaaggaactccgcagccttatttataatagcc
agaagctggaaagaacttagatgcccctcaacagagggaatggatacaga
aaatggtggtacatctatacaatggagtactactcagctattaaaaagaa
tgaatttatgaaattccctagccaatggatgggcgtggagggcatcatcc
tgagtgagggtaccattcacaaagaaactcacacaatatgtactcactga
tagtggaaaatagccccaaacctaggatacccagaatataagatattaat
ttgctaaccaatgaacctcaggagaatgaagactgaagtgtgggacactt
atgccctcctagaatgtgggacaaacctcatggaaagaggtacagaagac
aaaggttggacgtgagattaaaggataggacatgtgaagactgctcattt
cagggatcccccataatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46327756_46328748
seq2: B6Ng01-065G24.b_48_1029

seq1  GAATTCACCTTTTCCTTCTCCCATCCCAATTTCTGCTTTTCCACAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTTCCTTCTCCCATCCCAATTTCTGCTTTTCCACAAGGCA  50

seq1  GGATGATCTATTAAGAACCAAGGCAGCTGCTAAAGGTTTTGTCTGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATCTATTAAGAACCAAGGCAGCTGCTAAAGGTTTTGTCTGAAAAA  100

seq1  CCTCAATCCAAACATATATACTATTCAGCAACTTCCATTCACAGGATCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATCCAAACATATATACTATTCAGCAACTTCCATTCACAGGATCGC  150

seq1  TGCATTCCACCTTCCTCTGCCTCAGTGCAGAGTCCTTGTTTCTGAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCACCTTCCTCTGCCTCAGTGCAGAGTCCTTGTTTCTGAGAAAC  200

seq1  CCCAGGAACTGTCCAAGTCCTGATTTGAAAACCTTCTGTTTAATCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAACTGTCCAAGTCCTGATTTGAAAACCTTCTGTTTAATCCTTCC  250

seq1  CACGTCTATAAAAAGTACAAAATGCAATCACTTCTCATGTTAAGACTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCTATAAAAAGTACAAAATGCAATCACTTCTCATGTTAAGACTCTT  300

seq1  CAAGAAGTCAACCAAGATTGTCAACATAAAATCTGAGAAATAGACATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTCAACCAAGATTGTCAACATAAAATCTGAGAAATAGACATCTC  350

seq1  TTCACACCTGCATCTACCTGTTACTTCATCTCCAACACATCCCACTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTGCATCTACCTGTTACTTCATCTCCAACACATCCCACTTGCT  400

seq1  ACATCGAAGATGAACATCTTTTGATGCTTCCTACAAGCCTTGGCATGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGAAGATGAACATCTTTTGATGCTTCCTACAAGCCTTGGCATGGAA  450

seq1  CATAATGCTTCCTATTCTCTTTCTAACTAATTAATTCTGACATGGTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGCTTCCTATTCTCTTTCTAACTAATTAATTCTGACATGGTCCTC  500

seq1  ATTACCTAGTCTCATATATTTCAGGAAGCATACTAGCATCTCTGTGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTAGTCTCATATATTTCAGGAAGCATACTAGCATCTCTGTGATTC  550

seq1  AGGACACCACCCTCTGTTCCCCTCAGCAGGGAACACAGACCTTGTCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCACCCTCTGTTCCCCTCAGCAGGGAACACAGACCTTGTCAGTG  600

seq1  AGAGAGAAATGTAGATTTATGGTCTATTTTTAAACCAAACCACCACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAATGTAGATTTATGGTCTATTTTTAAACCAAACCACCACAGGA  650

seq1  AAAGAGATGCTGCAGACATTCAGCAGATGCTTGACATACGACAAAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATGCTGCAGACATTCAGCAGATGCTTGACATACGACAAAATGGG  700

seq1  GCTCCATACATACCCATCTTGATACCCCCAAACTACAGTAGGAATTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATACATACCCATCTTGATACCCCCAAACTACAGTAGGAATTTTTT  750

seq1  TCACACACAAAAAAAATGGAACTGAACTTTGGCTAAACCTTCAGGCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACAAAAAAAATGGAACTGAACTTTGGCTAAACCTTCAGGCAAAC  800

seq1  CTTCTTTTGTTTCTTTCCTTTCTGGTCCACTGGCTCCCTCAATTCTACAT  850
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CTTCTTTTGTTTCTTTCCTTTCTGGT-CACTGGCTCCCTCAA-TCTACAT  848

seq1  CAAGTAACAGAAATCTGATATCAGTAAACATAATAAACTCTTAGGAAGAG  900
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  CAAGTAACAGAAATCTGATATCAGTAAACATAAT-AACTCTTAGG-AGAG  896

seq1  TGAAGTTCAATCTCCACCAACGTATCAGTTCCATGTTAAAATGCTTTCTC  950
      |||||||||||||||||| ||||||||||  |||||  ||||||||||||
seq2  TGAAGTTCAATCTCCACC-ACGTATCAGT--CATGT--AAATGCTTTCTC  941

seq1  ACTTACGTT-GAGAAGGGAGGGCAGCATATGCAGTTAAAGACAT  993
      ||||||||| ||||||||| |||||||||||||||  |||||||
seq2  ACTTACGTTGGAGAAGGGA-GGCAGCATATGCAGT--AAGACAT  982

seq1: chr6_46445809_46446931
seq2: B6Ng01-065G24.g_70_1187 (reverse)

seq1  GATTATGGGGTGGATCCCTGGATATG-GCAGTCTCTACATGGTCCATCCT  49
      |||||||||  |||||||| || ||| |||||||  |||||  | |||||
seq2  GATTATGGG--GGATCCCT-GAAATGAGCAGTCTTCACATGTCCTATCCT  47

seq1  TTCATCTCAGCTCCAAACTTTGTC-TCTGTAACTCCTTCCATGGGTGTTT  98
      || ||||||  ||||| ||||||| |||||| ||| ||||||| | ||||
seq2  TTAATCTCACGTCCAACCTTTGTCTTCTGTACCTCTTTCCATGAG-GTTT  96

seq1  TGTTCCCACATCTAAGGAGGGGCAT-AGTGT-CCACACTTCAGTCTTCAT  146
         ||||||||   |||| |||||| ||||| ||||||||||||||||||
seq2  --GTCCCACATTCTAGGA-GGGCATAAGTGTCCCACACTTCAGTCTTCAT  143

seq1  TCTTCTTGAGTTTCATGTGTTTAGCAAATT-ATATCTTATATCTTGGGTA  195
      || || |||| ||||| || |||||||||| |||||||||||  ||||||
seq2  TC-TCCTGAGGTTCAT-TGGTTAGCAAATTAATATCTTATATTCTGGGTA  191

seq1  TCCTAGGTTTGGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGA  245
      ||||||||||||||||| | ||||| ||||||||||||||||||||||||
seq2  TCCTAGGTTTGGGGCTATTTTCCAC-TATCAGTGAGTACATATTGTGTGA  240

seq1  GTTTCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCACGCCCA  295
      ||||||||||||||| ||  ||||||||||||||||||||||||||||||
seq2  GTTTCTTTGTGAATG-GTACCCTCACTCAGGATGATGCCCTCCACGCCCA  289

seq1  TCCATTTGGCTA-GGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTA  344
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCA-TTGGCTAGGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTA  338

seq1  GTACTCCATTGTATAGATGTACCA-CATTTTCTGTATCCATT-CCTCTGT  392
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  GTACTCCATTGTATAGATGTACCACCATTTTCTGTATCCATTCCCTCTGT  388

seq1  TGAGGGGCATCTAGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTG  442
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCATCTAAGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTG  438

seq1  CGGAGTTCCTTTAGGAGGGAAGGCTAGGAATCTTTGGGCTGGCACCGGTA  492
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTTCC-TTAGGAGGGAAGGCTAGGAATCTTTGGGCTGGCACCGGTA  487

seq1  GGGGAATCTAGACCACTATTACAAAGAGCTATTGCTTCATCTTCATCCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCTAGACCACTATTACAAAGAGCTATTGCTTCATCTTCATCCAG  537

seq1  GCACAGAACCAGGGAAGGAGATTTACTGCCAGGTTCTGGCTTATGGAATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAACCAGGGAAGGAGATTTACTGCCAGGTTCTGGCTTATGGAATT  587

seq1  GTGAAGGCTAACTAGGCAAATTCAAAATGAGGCTCATCCTCAAGAGGAAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCTAACTAGGCAAATTCAAAATGAGGCTCATCCTCAAGAGGAAC  637

seq1  AAAGTGGGACACTTAGGTGGAGATACAGCAGCCAGCTATAAGTAAAGTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGACACTTAGGTGGAGATACAGCAGCCAGCTATAAGTAAAGTGT  687

seq1  CTTCTGAAGGATGTTTTCAACCTTCCCTCTAGGATTCCTAACCACGGAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAGGATGTTTTCAACCTTCCCTCTAGGATTCCTAACCACGGAAG  737

seq1  GAAATCATGTAGATCAGCTAGAATAATCTCTTATGCAAAATCCACTCTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGTAGATCAGCTAGAATAATCTCTTATGCAAAATCCACTCTGC  787

seq1  AATTCCATCACTTTTACAACCAGGATTTGTCATTTATAAGACTGGACATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATCACTTTTACAACCAGGATTTGTCATTTATAAGACTGGACATT  837

seq1  GTACCTAAGGTGACAAAACATTCATCATAGCCAGTGAAGGTTACTTCTAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTAAGGTGACAAAACATTCATCATAGCCAGTGAAGGTTACTTCTAA  887

seq1  GATGAGCTACTGAAAAATCCAATTCTACAGTAAGTGAGAATTTATTTCCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCTACTGAAAAATCCAATTCTACAGTAAGTGAGAATTTATTTCCT  937

seq1  ATTGATGAATGTATGGCTGCACCATCATAGGCAGGCAGGGCATGCCTGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGAATGTATGGCTGCACCATCATAGGCAGGCAGGGCATGCCTGTT  987

seq1  GTGGACTGAGGGATTATTCAAACCCAACAACTTTGCTTTGCTGATGAAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTGAGGGATTATTCAAACCCAACAACTTTGCTTTGCTGATGAAGG  1037

seq1  TGCAAGTGAATCTTATGTCCATCAAATTGCTAAATAAAATATCCTGCCAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGAATCTTATGTCCATCAAATTGCTAAATAAAATATCCTGCCAT  1087

seq1  TGAGTGACAAGAACCATGATTCTATGAATTC  1123
      |||||||||||||||||||||||||||||||
seq2  TGAGTGACAAGAACCATGATTCTATGAATTC  1118