BAC Information

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BAC

Clone NameB6Ng01-065J17
Chromosome6 (Build37)8 (Build37)
Map Location 18,835,442 - 18,835,968116,172,490 - 116,172,837
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065J17.bB6Ng01-065J17.g
ACCDH885030DH885031
length847348
definitionDH885030|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J17, 5' end.DH885031|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(116,172,490 - 116,172,837)
sequence
gaattgtttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttatatcacaattgc
tctgtagtaaagctttaggtctggcatggtaattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcgaattgctccttccaattcgttgaagaattgagttgggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatggggagatctttcc
actctccactgtattttttgtgacataacctccctacttttggcgctggc
catgtcagctggactggtcagccatcctgagtatggaaattgacatagtt
ccgatcctcactcctgctcatcctgtgctggggttgcagactgtcctcaa
caagggttagactcatgctgtactcaccatgggttctagggatctgaact
caggtccttatactagggcagcaagccatttactcactgaagcccaggcc
aggggctgctaatcattgtaagtagaaagaaatggatgtgaggagcctcc
tattggacaaccataacactgcttatgaaagtggggtgggaggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-065J17.b_47_574 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAACAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      |||||||||||||||||||||| |||||
seq2  ATGGGGCTCAGAACTGAACAAACAATTC  528

seq1: chr8_116172490_116172837
seq2: B6Ng01-065J17.g_74_421 (reverse)

seq1  TCCCTCCTCCCACCCCACTTTCATAAGCAGTGTTATGGTTGTCCAATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTCCCACCCCACTTTCATAAGCAGTGTTATGGTTGTCCAATAGG  50

seq1  AGGCTCCTCACATCCATTTCTTTCTACTTACAATGATTAGCAGCCCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTCACATCCATTTCTTTCTACTTACAATGATTAGCAGCCCCTGG  100

seq1  CCTGGGCTTCAGTGAGTAAATGGCTTGCTGCCCTAGTATAAGGACCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTTCAGTGAGTAAATGGCTTGCTGCCCTAGTATAAGGACCTGAG  150

seq1  TTCAGATCCCTAGAACCCATGGTGAGTACAGCATGAGTCTAACCCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCCCTAGAACCCATGGTGAGTACAGCATGAGTCTAACCCTTGTT  200

seq1  GAGGACAGTCTGCAACCCCAGCACAGGATGAGCAGGAGTGAGGATCGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGTCTGCAACCCCAGCACAGGATGAGCAGGAGTGAGGATCGGAA  250

seq1  CTATGTCAATTTCCATACTCAGGATGGCTGACCAGTCCAGCTGACATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCAATTTCCATACTCAGGATGGCTGACCAGTCCAGCTGACATGGC  300

seq1  CAGCGCCAAAAGTAGGGAGGTTATGTCACAAAAAATACAGTGGAGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCAAAAGTAGGGAGGTTATGTCACAAAAAATACAGTGGAGAGT  348