BAC Information

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BAC

Clone NameB6Ng01-065L07
Chromosome6 (Build37)
Map Location 19,120,879 - 19,241,830
singlet/doubletdoublet
Overlap genenone
Upstream geneCftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065L07.bB6Ng01-065L07.g
ACCDH885101DH885102
length1,1271,096
definitionDH885101|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L07, 5' end.DH885102|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,120,879 - 19,122,020)(19,240,735 - 19,241,830)
sequence
gaattcccaaaaaaagatacatatacaagtttatcgaaggcttatctcta
tcttattccaaatccaactgcctaaaaaagtcacatacagagtcttcctt
aaaaacaggttcaggtgtggagagggaactgggacggaggatacatttga
aatgtaaataaataaaataaagaaagagagaaagaaggaaagaaagaaac
aaaggaaggaagaaaggaagaaacaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaagaaggaag
gaaggaagaaagaaaggaagaaagaaaggaaggaagaaaggaagaaagaa
aggaaggaagaaaataacaggattcagctgataaattgtcacacaatagg
agtatgtcttggctgcatttcagataatgtcaaggcatgggaactgttga
gggagattttcacacatctgttacagtccttcatgcttctgggcagcagt
aaacaaatcttcagcttcagtaacagtatccctgatgtaaagtgctttac
cttggttttcatctagccattatcttaaatgaaactttttaaaactctga
agccagaatttgttaattctgtggaactttctccccatatggtcattaaa
attacaaataccaatgttcagataaaaatatttaatccctttgattcact
ttataggaatttatatatgacccagtgatcttagtcataaaagcaaaaca
aaacagtagtattattaagtcaagtgtgatatacactggcagtgtcagtt
acaaagaaaaacactttctataaataatagagtaaacactagattctgcc
tctgaaatcaaataaacttttgaaacagttcattattggcacttcacttt
tatcacttttggagtttacaatttctttgtgtagattcaggtttcatctg
gattcatattccctctgcctcagggctccctttaatatttcttatattgt
tctactggcaatgagtttctgagctttgttgaaagcctttatgtcacttc
catttgtaaggtatttccatggtacagaattctggctgatgggctttttc
ctcgccttttcccctcattcagtactt
gaattcctagtcttgaggaaatataattttccccacttagctgaaacagt
attttgtatttgaatccattgctgtcttttgtattccattaaaatgtaca
atttaaaataacaaattactacttagtaaaggtatacagaaatacctata
attacctataaaattattgtctcctctttgcatttgtgtagcatacaatc
ttcttattttaatatgcccctgctttacaaagagaagcaaaacctatgat
tttttttaagtgaagctttctgtttttgtttttgtttttaccgagaaaga
taaaagagagcaaagcagactataatgatgttctgcaaaataatattaaa
gaaatatttgttaccatttgaaaacttgtctgaatataaagcagacatat
atagatttgattatagttatgccaagaaaaataactggaagtagttatgt
ttccagtttatttttatttttgagaactagtaaatatgcccaaagcaata
tattgtctaatctctgtaaaagagataaatatttggtaaattctacagtc
atccctgagcattcccacttaataaaaaatgcaaagagaaaaactgtatg
ataagaaataagaataacaaataatactgcagtctactatgatcatagtt
cagtctgaggctaattgtcagtaccttcacctaacttgtgatactgatca
aataagaaaaaattgattactaagcttttacagcaagaaaactttgggag
agagttttgtttagaataagaaaattggcatacgacatctaataacatct
acctcagcagtattaatatgctctatacttcagggatatggctttccata
acatggatatttttcatataaaatcatatcctttaaaaataagtatctgg
tatagaccagcaagagaacatggccctcagagtcactattgcagcactca
taaggacttgcagaccactaaagcacaaccacttactaaatcacagccac
gatcctgcatggttctggggtgggccctctgcctacaatgcaggattttg
tttagcttgggcttttatggattctaacaatggggagcggggagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19120879_19122020
seq2: B6Ng01-065L07.b_44_1170

seq1  GAATTCCCAAAAAAAGATACATATACAAGTTTATCGAAGGCTTATCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAAAAAGATACATATACAAGTTTATCGAAGGCTTATCTCTA  50

seq1  TCTTATTCCAAATCCAACTGCCTAAAAAAGTCACATACAGAGTCTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCCAAATCCAACTGCCTAAAAAAGTCACATACAGAGTCTTCCTT  100

seq1  AAAAACAGGTTCAGGTGTGGAGAGGGAACTGGGACGGAGGATACATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGGTTCAGGTGTGGAGAGGGAACTGGGACGGAGGATACATTTGA  150

seq1  AATGTAAATAAATAAAATAAAGAAAGAGAGAAAGAAGGAAAGAAAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATAAATAAAATAAAGAAAGAGAGAAAGAAGGAAAGAAAGAAAC  200

seq1  AAAGGAAGGAAGAAAGGAAGAAACAAAGAAAGAAAGAAAGAAAGAAAGAA  250
      ||||||||||||||||||||||||    ||||||||||||||||||||||
seq2  AAAGGAAGGAAGAAAGGAAGAAAC----AAAGAAAGAAAGAAAGAAAGAA  246

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAAGAAG  296

seq1  GAAGGAAGGAAGAAAGAAAGGAAGAAAGAAAGGAAGGAAGAAAGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGAAAGAAAGGAAGAAAGAAAGGAAGGAAGAAAGGAAGAA  346

seq1  AGAAAGGAAGGAAGAAAATAACAGGATTCAGCTGATAAATTGTCACACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGGAAGAAAATAACAGGATTCAGCTGATAAATTGTCACACAA  396

seq1  TAGGAGTATGTCTTGGCTGCATTTCAGATAATGTCAAGGCATGGGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTATGTCTTGGCTGCATTTCAGATAATGTCAAGGCATGGGAACTG  446

seq1  TTGAGGGAGATTTTCACACATCTGTTACAGTCCTTCATGCTTCTGGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGAGATTTTCACACATCTGTTACAGTCCTTCATGCTTCTGGGCAG  496

seq1  CAGTAAACAAATCTTCAGCTTCAGTAACAGTATCCCTGATGTAAAGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAACAAATCTTCAGCTTCAGTAACAGTATCCCTGATGTAAAGTGCT  546

seq1  TTACCTTGGTTTTCATCTAGCCATTATCTTAAATGAAACTTTTTAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGGTTTTCATCTAGCCATTATCTTAAATGAAACTTTTTAAAACT  596

seq1  CTGAAGCCAGAATTTGTTAATTCTGTGGAACTTTCTCCCCATATGGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCAGAATTTGTTAATTCTGTGGAACTTTCTCCCCATATGGTCAT  646

seq1  TAAAATTACAAATACCAATGTTCAGATAAAAATATTTAATCCCTTTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTACAAATACCAATGTTCAGATAAAAATATTTAATCCCTTTGATT  696

seq1  CAC-TTATAGGAA-TTATATATGACCCAGTGATCTTAGTCATAAAAGCAA  748
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACTTTATAGGAATTTATATATGACCCAGTGATCTTAGTCATAAAAGCAA  746

seq1  AACAAAACAGTAGTATTATTAAGTCAAGTGTGATATACACTGGCAGTGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAGTAGTATTATTAAGTCAAGTGTGATATACACTGGCAGTGTC  796

seq1  AGGTTACAAAGAAAAACACTTTCTATAAATAAATAGAGTAAAACACTAGA  848
      | |||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  A-GTTACAAAGAAAAACACTTTCTATAAAT-AATAGAGT-AAACACTAGA  843

seq1  TTCTGCCTCTGAAATCAAATAAACTTTTGAAACAGTTCATTATTGGCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCTGAAATCAAATAAACTTTTGAAACAGTTCATTATTGGCACT  893

seq1  TCACTTTTATCACTTTTGGAGTTTACAATTTCTTTGTGTAGATTCAAGTT  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCACTTTTATCACTTTTGGAGTTTACAATTTCTTTGTGTAGATTCAGGTT  943

seq1  TCCATCTGGATTCATATTCCCTCTGCCTCAAGGGCTCCCTTTAATATTTC  998
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  T-CATCTGGATTCATATTCCCTCTGCCTC-AGGGCTCCCTTTAATATTTC  991

seq1  TTATATTGTATCTACTGGCAATGAGTTTTCTGAGCTTTTGTCTGAAAGCC  1048
      ||||||||| ||||||||||||||| ||||||||| ||||| ||||||||
seq2  TTATATTGT-TCTACTGGCAATGAG-TTTCTGAGC-TTTGT-TGAAAGCC  1037

seq1  TTTATGTCACTTTCATTTTGTTAAGGTATTTTCAATGGTTACAGAAGTCT  1098
      |||||||||||| |||||   ||||||| |||| |||| ||||||| |||
seq2  TTTATGTCACTTCCATTT--GTAAGGTA-TTTCCATGG-TACAGAATTCT  1083

seq1  GGGCTGAT-GGCTTTTCTCTCGCTTTTTCCCCCCATTCAGTACTT  1142
       ||||||| |||||||  ||||| |||||||| ||||||||||||
seq2  -GGCTGATGGGCTTTTTCCTCGCCTTTTCCCCTCATTCAGTACTT  1127

seq1: chr6_19240735_19241830
seq2: B6Ng01-065L07.g_68_1163 (reverse)

seq1  TACTCCCAG--TCCCACTGTTAAGAATCCCATAAAAGCCCCAAGCTAAAC  48
      ||||||| |   |||| |||| ||||| ||||||||| ||||||||||||
seq2  TACTCCCCGCTCCCCATTGTT-AGAAT-CCATAAAAG-CCCAAGCTAAAC  47

seq1  AAAATCCTGCA-TGTATGCAGAGGGCCCACCACAGACCCATGCAGGATCC  97
      ||||||||||| |||| |||||||||||||| |||| ||||||||||| |
seq2  AAAATCCTGCATTGTAGGCAGAGGGCCCACCCCAGAACCATGCAGGAT-C  96

seq1  GTGGCTGTGATTTAGTAAGTGGTTGTGCTTTAGT-GTCTGCAAGTCCTTA  146
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGGCTGTGATTTAGTAAGTGGTTGTGCTTTAGTGGTCTGCAAGTCCTTA  146

seq1  TGAGTGCTGC-ATAGTTGACTCTGAGGGCCATGTTCTCTTGCTGTCCTAT  195
      |||||||||| |||| ||||||||||||||||||||||||||||  ||||
seq2  TGAGTGCTGCAATAG-TGACTCTGAGGGCCATGTTCTCTTGCTGGTCTAT  195

seq1  ACCAGATACTTAATTTTTAAAGGATATGATTTTATATGAAAAATATCCAT  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATACTT-ATTTTTAAAGGATATGATTTTATATGAAAAATATCCAT  244

seq1  GTTATGGAAAGCCATATCCCTGAAGTATAGAGCATATTAATACTGCTGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGAAAGCCATATCCCTGAAGTATAGAGCATATTAATACTGCTGAG  294

seq1  GTAGATGTTATTAGATGTCGTATGCCAATTTTCTTATTCTAAACAATACT  345
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTAGATGTTATTAGATGTCGTATGCCAATTTTCTTATTCTAAACAAAACT  344

seq1  CTCT-CCAAAGTTTTCTTGCTGTAAAAGCTTAGTAATCAATTTTTTCTTA  394
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAAAGTTTTCTTGCTGTAAAAGCTTAGTAATCAATTTTTTCTTA  394

seq1  TTTGATCAGTATCACAAGTTAGGTGAAGGTACTGACAATTAGCCTCAGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCAGTATCACAAGTTAGGTGAAGGTACTGACAATTAGCCTCAGAC  444

seq1  TGAACTATGATCATAGTAGACTGCAGTATTATTTGTTATTCTTATTTCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATGATCATAGTAGACTGCAGTATTATTTGTTATTCTTATTTCTT  494

seq1  ATCATACAGTTTTTCTCTTTGCATTTTTTATTAAGTGGGAATGCTCAGGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACAGTTTTTCTCTTTGCATTTTTTATTAAGTGGGAATGCTCAGGG  544

seq1  ATGACTGTAGAATTTACCAAATATTTATCTCTTTTACAGAGATTAGACAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTAGAATTTACCAAATATTTATCTCTTTTACAGAGATTAGACAA  594

seq1  TATATTGCTTTGGGCATATTTACTAGTTCTCAAAAATAAAAATAAACTGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCTTTGGGCATATTTACTAGTTCTCAAAAATAAAAATAAACTGG  644

seq1  AAACATAACTACTTCCAGTTATTTTTCTTGGCATAACTATAATCAAATCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAACTACTTCCAGTTATTTTTCTTGGCATAACTATAATCAAATCT  694

seq1  ATATATGTCTGCTTTATATTCAGACAAGTTTTCAAATGGTAACAAATATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTCTGCTTTATATTCAGACAAGTTTTCAAATGGTAACAAATATT  744

seq1  TCTTTAATATTATTTTGCAGAACATCATTATAGTCTGCTTTGCTCTCTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATATTATTTTGCAGAACATCATTATAGTCTGCTTTGCTCTCTTT  794

seq1  TATCTTTCTCGGTAAAAACAAAAACAAAAACAGAAAGCTTCACTTAAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCTCGGTAAAAACAAAAACAAAAACAGAAAGCTTCACTTAAAAA  844

seq1  AAATCATAGGTTTTGCTTCTCTTTGTAAAGCAGGGGCATATTAAAATAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAGGTTTTGCTTCTCTTTGTAAAGCAGGGGCATATTAAAATAAG  894

seq1  AAGATTGTATGCTACACAAATGCAAAGAGGAGACAATAATTTTATAGGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTATGCTACACAAATGCAAAGAGGAGACAATAATTTTATAGGTA  944

seq1  ATTATAGGTATTTCTGTATACCTTTACTAAGTAGTAATTTGTTATTTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGTATTTCTGTATACCTTTACTAAGTAGTAATTTGTTATTTTAA  994

seq1  ATTGTACATTTTAATGGAATACAAAAGACAGCAATGGATTCAAATACAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACATTTTAATGGAATACAAAAGACAGCAATGGATTCAAATACAAA  1044

seq1  ATACTGTTTCAGCTAAGTGGGGAAAATTATATTTCCTCAAGACTAGGAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTTCAGCTAAGTGGGGAAAATTATATTTCCTCAAGACTAGGAAT  1094

seq1  TC  1096
      ||
seq2  TC  1096