BAC Information

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BAC

Clone NameB6Ng01-065P04
Chromosome6 (Build37)13 (Build37)
Map Location 101,113,406 - 101,113,50011,636,560 - 11,637,712
singlet/doubletsingletsinglet
Overlap genePdzrn3
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321
Downstream geneEG666084, Cntn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065P04.bB6Ng01-065P04.g
ACCDH885273DH885274
length2341,128
definitionDH885273|Mus musculus domesticus DNA, BAC clone: B6Ng01-065P04, 5' end.DH885274|Mus musculus domesticus DNA, BAC clone: B6Ng01-065P04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,113,406 - 101,113,500)(11,636,560 - 11,637,712)
sequence
tttggtcagcaaaccaaccacacatttttaatcccagcacttgggagagg
caaaagtcagaaaaatctctgtgagttcaagttctgcctacatagcaaat
tccaggctagccaaagaccctgtctcaaaagagcaaaaagaaaaaagaaa
aaaaaagagagaaagaaagaaagagagagagagagagagagagagagaga
gagagagagagagagagaaggaaggagagagaga
gaattccagggaaggaacaaaaggaaatcttttgcagttatcatgtgaat
ggaaaacaacctaacccttctctcccagtccagaggaaagagttgtttcc
aggcacaacattttacagaatggtatgttgtaaagactttagtcgagtaa
ttataccctgagcacaattagacaattagagctggtagtatttcaaacta
tctaaacaacaaaaatgcaaagtaaaaagacatttgcttaactatagtcc
tgagacaatgatagaaaccattaactaatgtaataaaagaccagtatcta
gagcatagcaagatggcaggtcaaggtgtttgctttcccaagcttgatga
cccaagttcgatcctcagaatccacgtggtagaagtgaaaaccaaatccc
acaagttgtcttctgatctcccattatgcaccatcatacatacatacata
catacatgcagacagacacacacacacatacacacacacacaatgtaaat
gtgaattggatgttactcaagtacataataaatattgggcactttatgtg
cctgtcttcatcttcaaacagaaaagaaagctgagcttgaaatggattag
acattttatattctgtttcatttgcctctgtgttcaaaaacacctagcct
agtatctggcagaaaaacgtgtctaacgaatgcatgaaagaaataatcca
gaaccactgttggaatgcttaattgtgaacattttcaatatcttctctac
tacttgtgagaaattcaactgtcaaataggaatacgtaagacgtaatgct
cacattctcagcagctaaacagagcaagattttctttctcttagtctgag
catgtttgtttctttgtcttggtccctctgtcctgttgctctctccctca
cctccatgtgtatatgtattgtgttacttactaaatatcccagaatttct
tgaacctggaatcttcttctctcaaagcctcctcaaagctgagattacag
gtccatgccttttccgtgtgatggatacctagatagatatctgccaaata
atctggaaaacccataatagaaatctcactaggctcctttatttttcgag
atagacaaagaaaaacctagccttgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101113406_101113500
seq2: B6Ng01-065P04.b_187_284 (reverse)

seq1  TCTCTCTCTC--TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  48
      ||||||||||  ||  ||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  TCTCTCTCTTTCTCTCTCTCTTTCTCTCTCTCTTTCT-TTCTTTCTTT  95
      ||||||||| ||| ||| ||||||||||| | ||| | || |||||||
seq2  TCTCTCTCTCTCTTTCTTTCTTTCTCTCTTTTTTTTTCTTTTTTCTTT  98

seq1: chr13_11636560_11637712
seq2: B6Ng01-065P04.g_69_1196

seq1  GAATTCCAGGGAAGGAACAAAAGGAAATCTTTTGCAGTTATCATGTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAAGGAACAAAAGGAAATCTTTTGCAGTTATCATGTGAAT  50

seq1  GGAAAACAACCTAACCCTTCTCTCCCAGTCCAGAGGAAAGAGTTGTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAACCTAACCCTTCTCTCCCAGTCCAGAGGAAAGAGTTGTTTCC  100

seq1  AGGCACAACATTTTACAGAATGGTATGTTGTAAAGACTTTAGTCGAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAACATTTTACAGAATGGTATGTTGTAAAGACTTTAGTCGAGTAA  150

seq1  TTATACCCTGAGCACAATTAGACAATTAGAGCTGGTAGTATTTCAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCCTGAGCACAATTAGACAATTAGAGCTGGTAGTATTTCAAACTA  200

seq1  TCTAAACAACAAAAATGCAAAGTAAAAAGACATTTGCTTAACTATAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAACAAAAATGCAAAGTAAAAAGACATTTGCTTAACTATAGTCC  250

seq1  TGAGACAATGATAGAAACCATTAACTAATGTAATAAAAGACCAGTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATGATAGAAACCATTAACTAATGTAATAAAAGACCAGTATCTA  300

seq1  GAGCATAGCAAGATGGCAGGTCAAGGTGTTTGCTTTCCCAAGCTTGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAGCAAGATGGCAGGTCAAGGTGTTTGCTTTCCCAAGCTTGATGA  350

seq1  CCCAAGTTCGATCCTCAGAATCCACGTGGTAGAAGTGAAAACCAAATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTCGATCCTCAGAATCCACGTGGTAGAAGTGAAAACCAAATCCC  400

seq1  ACAAGTTGTCTTCTGATCTCCCATTATGCACCATCATACATACATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTCTTCTGATCTCCCATTATGCACCATCATACATACATACATA  450

seq1  CATACATGCAGACAGACACACACACACATACACACACACACAATGTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCAGACAGACACACACACACATACACACACACACAATGTAAAT  500

seq1  GTGAATTGGATGTTACTCAAGTACATAATAAATATTGGGCACTTTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTGGATGTTACTCAAGTACATAATAAATATTGGGCACTTTATGTG  550

seq1  CCTGTCTTCATCTTCAAACAGAAAAGAAAGCTGAGCTTGAAATGGATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCATCTTCAAACAGAAAAGAAAGCTGAGCTTGAAATGGATTAG  600

seq1  ACATTTTATATTCTGTTTCATTTGCCTCTGTGTTCAAAAACACCTAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATATTCTGTTTCATTTGCCTCTGTGTTCAAAAACACCTAGCCT  650

seq1  AGTATCTGGCAGAAAAACGTGTCTAACGAATGCATGAAAGAAATAATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGGCAGAAAAACGTGTCTAACGAATGCATGAAAGAAATAATCCA  700

seq1  GAACCACTGTTGGAATGCTTAATTGTGAACATTTTCAATATCTTCTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACTGTTGGAATGCTTAATTGTGAACATTTTCAATATCTTCTCTAC  750

seq1  TACTTGTGAGAAATTCAACTGTCAAATAGGAATACGTAAGACGTAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGAGAAATTCAACTGTCAAATAGGAATACGTAAGACGTAATGCT  800

seq1  CACAATTCTCAGCAGCT-AACAGAGCAAGATTTTCTTTCTCTTAGTCTGA  849
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAC-ATTCTCAGCAGCTAAACAGAGCAAGATTTTCTTTCTCTTAGTCTGA  849

seq1  GCATGTTTGTTTCTTTGTCTTGGTCCCTCTGTCCTGTTGCTCTCTCCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTGTTTCTTTGTCTTGGTCCCTCTGTCCTGTTGCTCTCTCCCTC  899

seq1  ACCTCCATGTGTATATGTATTGTGTTAACTTACTATATATCCCAGGATTT  949
      |||||||||||||||||||||||||| |||||||| ||||||||| ||||
seq2  ACCTCCATGTGTATATGTATTGTGTT-ACTTACTAAATATCCCAGAATTT  948

seq1  CTTGAACCTGGAATCTTCCTTCTCTCAAAGCCT-CTCAAAGGCTGAGATT  998
      ||||||||||||||||| ||||||||||||||| |||||| |||||||||
seq2  CTTGAACCTGGAATCTT-CTTCTCTCAAAGCCTCCTCAAA-GCTGAGATT  996

seq1  ACAGGTCCATGGCTTTTTTCGGTGTTGATGGATAACTAGATAGGATATCT  1048
      ||||||||||| |  ||||| ||| ||||||||| ||||||| |||||||
seq2  ACAGGTCCATGCC--TTTTCCGTG-TGATGGATACCTAGATA-GATATCT  1042

seq1  GCCAAAATAATCT-GAAAACCCATAAATACAGAAATCTTCAACTAGGCCT  1097
      ||| ||||||||| |||||||||||   | ||||||||   |||||||  
seq2  GCC-AAATAATCTGGAAAACCCATA---ATAGAAATCT--CACTAGGC--  1084

seq1  TCCTTTATTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAGAC  1147
      |||||||||||||             | | | | ||| ||||| |||| |
seq2  TCCTTTATTTTTC------------GAGATAGACAAAGAAAAACCTAGCC  1122

seq1  TTGAGT  1153
      ||||||
seq2  TTGAGT  1128