BAC Information

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BAC

Clone NameB6Ng01-066D22
Chromosome6 (Build37)
Map Location 18,081,871 - 18,192,068
singlet/doubletdoublet
Overlap geneLOC386426, LOC636450, LOC100040751, Cftr
Upstream geneEG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2, Asz1
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066D22.bB6Ng01-066D22.g
ACCDH885475DH885476
length3461,055
definitionDH885475|Mus musculus domesticus DNA, BAC clone: B6Ng01-066D22, 5' end.DH885476|Mus musculus domesticus DNA, BAC clone: B6Ng01-066D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,081,871 - 18,082,217)(18,191,002 - 18,192,068)
sequence
cagtaaaggtccttgttaattatgaagagtgcatttttactccaagagaa
gaatggcagacagagtaaaagggggtaattgttgaatgtttaaataaaca
caatctatgtgggaatgaataatatgatttataaaataggaagctatacc
agccaatcaaatttatttcaacaaatgataaaaaaggatagttgttttaa
aaaggaacaaggaaatataacttattaacattttcccttgacaaagtctc
cattctcctttttccacccctgccctcatcataacacacagatacataga
ctgtggttttaaacattgaactatagggctggagaataacttttat
gaattctcttgtcactggggctgtgtgaggcagagaaggtagatgagaga
acagtgtaagcccttgctctctctcaacactgaaataggactctaatttc
ataagacatgttattctactagagctacatcacactagttcttctctcaa
agctagaacagtctctagtgctgggccctgaaaagaaatgtgtcaaggaa
accctaatggcccgcagaggaaaatgaagagagccaatggacacaaggac
gcagaacagtgtttgcaagtgactctcaattcacctaaaagcctgttgtc
ttaaaatctagactctaaaattcatttttaaaaagcaaagcatggagatt
tttcccaaaggagagcttaaaagtaaaaaaaaaaacaaacaaaaaaaaac
ccataacatatttatttgagacttcatgctaaaaatcattctatcaacag
aaccaccatgcccttcccccttgagctgcctcatctagtgaataatttcc
aacaacagactgaaatcagaaaactatgtgaaatatgttgtgcatgcttt
gcccttccacactcacatactcctgtgacactgagcatcacgacacacag
gggactttgaagatctcggagttgaacaaaatcacaagcatgaggaagag
gatatcccatccccatctctgattccaagccttgatgcagcacactgaga
aacagatcaacttcagcagtcagaatgcaaacagagtcatgaatgtctgg
gtttcgcaaatgggaccgtccacagatcatgctgaggggttcttgtgttg
gtgccagctcttgagccactgagctctgtaggtatactgtgttcctgtga
tcaaaattcctgcattcttaattgtcattatacatacatacgtgtgtatg
tatgtatgtatgtatgtgcatatgcacgtgtgtatgcgtatgtatatgta
tatatggtaaaagtggcataaaaaggaaaaagactagggatctttaattt
aaaaaaagacgtttacttgacagtttatttatctagaaaacagtatttag
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18081871_18082217
seq2: B6Ng01-066D22.b_55_400

seq1  CAGTAAAGGTCCTTGTTAATTATGAATTGTGCATTTTTACTCCAAGAGAA  50
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CAGTAAAGGTCCTTGTTAATTATGAAGAGTGCATTTTTACTCCAAGAGAA  50

seq1  GAATGGCAGACAGAGTCATAATGGTGTAATTGTTGAATGTTTAAATAAAC  100
      |||||||||||||||| | || || |||||||||||||||||||||||||
seq2  GAATGGCAGACAGAGT-AAAAGGGGGTAATTGTTGAATGTTTAAATAAAC  99

seq1  ACAATCTATGTGGGAATGAATAATATGATTTATAAAATAGGAAGTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  ACAATCTATGTGGGAATGAATAATATGATTTATAAAATAGGAAGCTATAC  149

seq1  CAGCCAATCAAATTTATTTCAACAAATGATAAAAAAAGATAGTTGTTTTA  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGCCAATCAAATTTATTTCAACAAATGATAAAAAAGGATAGTTGTTTTA  199

seq1  AAAAGGAACAAGGAAATATAACTTATTAACATTTTCCCTTGACAAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAACAAGGAAATATAACTTATTAACATTTTCCCTTGACAAAGTCT  249

seq1  CCATTCTCCTTTTTCCACCCCTGCCCTCATCATAACACACAGATACATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCCTTTTTCCACCCCTGCCCTCATCATAACACACAGATACATAG  299

seq1  ACTGTGGTTTTAAACATTGAACTATAGGGCTGGAGAAAAACTTTTAT  347
      ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTGTGGTTTTAAACATTGAACTATAGGGCTGGAGAATAACTTTTAT  346

seq1: chr6_18191002_18192068
seq2: B6Ng01-066D22.g_66_1120 (reverse)

seq1  ACACACTAAAATACCTTGTTTTCTTAGATAAATAAAATGTTAAGTAAAAC  50
      ||||||| ||||||  ||||||| |||||||||||| ||| |||| ||||
seq2  ACACACT-AAATAC--TGTTTTC-TAGATAAATAAACTGTCAAGT-AAAC  45

seq1  GTCTTTTTTTAAATTTTAAAGAATCCCTAAGTCTTTTTCCTTTTTTATGC  100
      |||||||||||||  |||||| |||||| ||||||||||| |||||||||
seq2  GTCTTTTTTTAAA--TTAAAG-ATCCCT-AGTCTTTTTCC-TTTTTATGC  90

seq1  CACTTTTTACCATATATACATATACATACGCATACACACGTGCATATGCA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAC-TTTTACCATATATACATATACATACGCATACACACGTGCATATGCA  139

seq1  CATACATACATACATACATACACACGTATGTATGTATAATGACAATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATACATACATACATACATACACACGTATGTATGTATAATGACAA-TTAA  188

seq1  GAATGCAGGAATTTTGATCACAGGAACACAGTATACCTACAGAGCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGGAATTTTGATCACAGGAACACAGTATACCTACAGAGCTCAGT  238

seq1  GGCTCAAGAGCTGGCACCAACACAAGAACCCCTCAGCATGATCTGTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAGAGCTGGCACCAACACAAGAACCCCTCAGCATGATCTGTGGAC  288

seq1  GGTCCCATTTGCGAAACCCAGACATTCATGACTCTGTTTGCATTCTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCATTTGCGAAACCCAGACATTCATGACTCTGTTTGCATTCTGACT  338

seq1  GCTGAAGTTGATCTGTTTCTCAGTGTGCTGCATCAAGGCTTGGAATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTTGATCTGTTTCTCAGTGTGCTGCATCAAGGCTTGGAATCAGA  388

seq1  GATGGGGATGGGATATCCTCTTCCTCATGCTTGTGATTTTGTTCAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGATGGGATATCCTCTTCCTCATGCTTGTGATTTTGTTCAACTCC  438

seq1  GAGATCTTCAAAGTCCCCTGTGTGTCGTGATGCTCAGTGTCACAGGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTCAAAGTCCCCTGTGTGTCGTGATGCTCAGTGTCACAGGAGTA  488

seq1  TGTGAGTGTGGAAGGGCAAAGCATGCACAACATATTTCACATAGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTGGAAGGGCAAAGCATGCACAACATATTTCACATAGTTTTCT  538

seq1  GATTTCAGTCTGTTGTTGGAAATTATTCACTAGATGAGGCAGCTCAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTCTGTTGTTGGAAATTATTCACTAGATGAGGCAGCTCAAGGG  588

seq1  GGAAGGGCATGGTGGTTCTGTTGATAGAATGATTTTTAGCATGAAGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCATGGTGGTTCTGTTGATAGAATGATTTTTAGCATGAAGTCTC  638

seq1  AAATAAATATGTTATGGGTTTTTTTTTGTTTGTTTTTTTTTTTACTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATGTTATGGGTTTTTTTTTGTTTGTTTTTTTTTTTACTTTTA  688

seq1  AGCTCTCCTTTGGGAAAAATCTCCATGCTTTGCTTTTTAAAAATGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCTTTGGGAAAAATCTCCATGCTTTGCTTTTTAAAAATGAATTT  738

seq1  TAGAGTCTAGATTTTAAGACAACAGGCTTTTAGGTGAATTGAGAGTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTAGATTTTAAGACAACAGGCTTTTAGGTGAATTGAGAGTCACT  788

seq1  TGCAAACACTGTTCTGCGTCCTTGTGTCCATTGGCTCTCTTCATTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACACTGTTCTGCGTCCTTGTGTCCATTGGCTCTCTTCATTTTCCT  838

seq1  CTGCGGGCCATTAGGGTTTCCTTGACACATTTCTTTTCAGGGCCCAGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGCCATTAGGGTTTCCTTGACACATTTCTTTTCAGGGCCCAGCAC  888

seq1  TAGAGACTGTTCTAGCTTTGAGAGAAGAACTAGTGTGATGTAGCTCTAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTGTTCTAGCTTTGAGAGAAGAACTAGTGTGATGTAGCTCTAGT  938

seq1  AGAATAACATGTCTTATGAAATTAGAGTCCTATTTCAGTGTTGAGAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAACATGTCTTATGAAATTAGAGTCCTATTTCAGTGTTGAGAGAGA  988

seq1  GCAAGGGCTTACACTGTTCTCTCATCTACCTTCTCTGCCTCACACAGCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGCTTACACTGTTCTCTCATCTACCTTCTCTGCCTCACACAGCCC  1038

seq1  CAGTGACAAGAGAATTC  1067
      |||||||||||||||||
seq2  CAGTGACAAGAGAATTC  1055