BAC Information

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BAC

Clone NameB6Ng01-066H05
Chromosome6 (Build37)
Map Location 24,504,746 - 24,615,791
singlet/doubletdoublet
Overlap geneAsb15, EG626715, Lmod2, Wasl
Upstream geneCadps2, Rnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5
Downstream gene4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066H05.bB6Ng01-066H05.g
ACCDH885629DH885630
length1,1181,025
definitionDH885629|Mus musculus domesticus DNA, BAC clone: B6Ng01-066H05, 5' end.DH885630|Mus musculus domesticus DNA, BAC clone: B6Ng01-066H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,504,746 - 24,505,873)(24,614,764 - 24,615,791)
sequence
gaattccaataaggactgctgtaggaggaagactcctgtgccagactcga
ggcagtggggaccagggtgcagagcagccaagacagccttctgaagaaag
caccagatgtaaaaacaaaaagcagagcaaactgatgccagatccagagt
tagcagtcagtttgttccgttggaagaagaaccacattcctgagagaaac
ggtcagtggtaagaacaaggaagagctagatattcttcatgcatttgttc
tctcctccagccaccactcacggtacatgtgaggaccccagatcacgcgg
acattcttctccagacactgaggttgcaccctagctctctgatcttgtga
acttacagtcgatggtcaggacgcaatgggtcagtttatactaaataaat
atgtaccacttgaatctatttggtgaagaagatcccagacatgcacattg
gcccgcaaggagacagttacgtcagcgttagggggtatgctcagtagagt
gtaggaccttctcacatccatctcccctctttgtcctgttcccaaacatt
ggtcaggctgcttatcccaaacagtatttttgttgttgttttgtttgttt
caatgacttgacaaggtcctatcattgcagctcaaggtggcctgaaactt
atgaacctcctatcttagcctcctaagtgctggtacttgcaaagggtata
ccaccagacaaggctcattacagcaaaatgaacaaaaatccttacagcgt
tacagtcttggtgcagtctgtcctgagattggagcccttggctagccctg
tatttagatctgtctttcaagatcatctgaccttgaaagctgagaagatg
catagcacaggtcaactgtgtctggaaattgcttgcagaccttgcttctg
tttctcccctttaaaaagcccagtgctgtgtcaaatgtcagaaggaatgc
agtgggcttggcagaactgctaactatgataatttcatattgctagtcac
cccactgtaggactatttcagctctatactactaaatgccctgcctttca
ccaaagaagctgacttaacatcagagagagacatttacttttaatagata
gctgtttgtttgttcgtt
gaattctcattatttacttctgctgggaatattgctcagctggctgagta
tgcaccaggccctaggtccctgcacctagaatacagagccatgaaattaa
ctcgtaaggaaaaaagaggtaaggtgtattcctacacgacattcccaaac
gcgtgcattcatcctgaattaaagagacaaggtgcttccaacttgagata
gagaaagattgagaggggtagtttccaattcacaaggcaaggaaaaaact
acacacacctatcccacgagatccgccaggcgggtggtggacgccttttg
cgattctgtttttgacatctctgaagatgtctatcctgatcttagcaatg
tccctccacgccccgttggcggccgggactaagatccagaaacccgaggc
acctgcggctctgaccgaaactacgccggccgacctttctctccagctaa
actagatctccctgacaggcggcctgagagtctcgcttcgatgcctaaca
aacactggctacgcggacccgacgctccgcaaaggtgggcgctgctgcaa
gggggcgtccggctcggcagtcagtgtaggagacccgccagccctgcctc
gctctgagtctgcgcacgcgcgcggtggtcattggtgggggcgactagcc
tgcaacaagacctcaaccgggatgagccttgccgcttccggaaggggcgg
ggcctgggtaggacacgccccggcacgcagcaaccgagggggtgtcccgc
cttgccgagtttccggcgctctcccccgcgtcccgcgtcccgtggtctcg
cccgcccccgctgccatgttggattgtgcggctgccgccgccgccgctgc
cgccgccgccgccagaggactggaggagtagggagtttagcgcagccgcc
ggagtgctaggacaacgaccatccagcccgagctgagcagggcgggagcc
cgagcttccctgtcgcgcgcggcccggaggctcccgccgtcatctccttc
ctctgtctccgtgcgccggaggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_24504746_24505873
seq2: B6Ng01-066H05.b_46_1163

seq1  GAATTCCAATAAGGACTGCTGTAGGAGGAAGACTCCTGTGCCAGACTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAAGGACTGCTGTAGGAGGAAGACTCCTGTGCCAGACTCGA  50

seq1  GGCAGTGGGGACCAGGGTGCAGAGCAGCCAAGACAGCCTTCTGAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGGGACCAGGGTGCAGAGCAGCCAAGACAGCCTTCTGAAGAAAG  100

seq1  CACCAGATGTAAAAACAAAAAGCAGAGCAAACTGATGCCAGATCCAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGATGTAAAAACAAAAAGCAGAGCAAACTGATGCCAGATCCAGAGT  150

seq1  TAGCAGTCAGTTTGTTCCGTTGGAAGAAGAACCACATTCCTGAGAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCAGTTTGTTCCGTTGGAAGAAGAACCACATTCCTGAGAGAAAC  200

seq1  GGTCAGTGGTAAGAACAAGGAAGAGCTAGATATTCTTCATGCATTTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGGTAAGAACAAGGAAGAGCTAGATATTCTTCATGCATTTGTTC  250

seq1  TCTCCTCCAGCCACCACTCACGGTACATGTGAGGACCCCAGATCACGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCAGCCACCACTCACGGTACATGTGAGGACCCCAGATCACGCGG  300

seq1  ACATTCTTCTCCAGACACTGAGGTTGCACCCTAGCTCTCTGATCTTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTCTCCAGACACTGAGGTTGCACCCTAGCTCTCTGATCTTGTGA  350

seq1  ACTTACAGTCGATGGTCAGGACGCAATGGGTCAGTTTATACTAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGTCGATGGTCAGGACGCAATGGGTCAGTTTATACTAAATAAAT  400

seq1  ATGTACCACTTGAATCTATTTGGTGAAGAAGATCCCAGACATGCACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCACTTGAATCTATTTGGTGAAGAAGATCCCAGACATGCACATTG  450

seq1  GCCCGCAAGGAGACAGTTACGTCAGCGTTAGGGGGTATGCTCAGTAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCAAGGAGACAGTTACGTCAGCGTTAGGGGGTATGCTCAGTAGAGT  500

seq1  GTAGGACCTTCTCACATCCATCTCCCCTCTTTGTCCTGTTCCCAAACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACCTTCTCACATCCATCTCCCCTCTTTGTCCTGTTCCCAAACATT  550

seq1  GGTCAGGCTGCTTATCCCAAACAGTATTTTTGTTGTTGTTTTGTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCTGCTTATCCCAAACAGTATTTTTGTTGTTGTTTTGTTTGTTT  600

seq1  CAATGACTTGACAAGGTCCTATCATTGCAGCTCAAGGTGGCCTGAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTTGACAAGGTCCTATCATTGCAGCTCAAGGTGGCCTGAAACTT  650

seq1  ATGAACCTCCTATCTTAGCCTCCTAAGTGCTGGTACTTGCAAAGGGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTCCTATCTTAGCCTCCTAAGTGCTGGTACTTGCAAAGGGTATA  700

seq1  CCACCAGACAAGGCTCATTACAGCAAAATGAACAAAAATCCTTACAGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGACAAGGCTCATTACAGCAAAATGAACAAAAATCCTTACAGCGT  750

seq1  TACAGTCTTGGTGCAGTCTGTCCTGAGATTGGAGCCCTTGGCTAGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTTGGTGCAGTCTGTCCTGAGATTGGAGCCCTTGGCTAGCCCTG  800

seq1  TATTTAGATCTGTCTTTCAAGATCATCTGACCTTGAAAGCTGAGAAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGATCTGTCTTTCAAGATCATCTGACCTTGAAAGCTGAGAAGATG  850

seq1  CATAGCACAGGTCAACTGTGTCTGGAAATTGCTTGCAGACCTTGCTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCACAGGTCAACTGTGTCTGGAAATTGCTTGCAGACCTTGCTTCTG  900

seq1  TTTCTCCCCTTTAAAAAGCCCAGTGCTGTGTCAAATGTCAGAAGGAATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCCTTTAAAAAGCCCAGTGCTGTGTCAAATGTCAGAAGGAATGC  950

seq1  AGTGGGCTTGGCAGAACTGCTAACTAATGATAATTTCATATTGCTTAGTC  1000
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  AGTGGGCTTGGCAGAACTGCTAACT-ATGATAATTTCATATTGC-TAGTC  998

seq1  ACCCCACTGTAGGACTATTTTCAGCTTCTATACTTACTAAATGCCCTGCC  1050
      ||||||||||||||||| ||||||| ||||||| ||||||||||||||||
seq2  ACCCCACTGTAGGACTA-TTTCAGC-TCTATAC-TACTAAATGCCCTGCC  1045

seq1  TTTCACCAAAGAAGCTGACTTAACATTAAAGAGAGACATTTACTTTTCTA  1100
      |||||||||||||||||||||||||| | ||||||||||||||||||   
seq2  TTTCACCAAAGAAGCTGACTTAACATCAGAGAGAGACATTTACTTTT---  1092

seq1  ATTAGATAGCTGTTTTTGTTTGTTCGTT  1128
      | ||||||||||  ||||||||||||||
seq2  AATAGATAGCTG--TTTGTTTGTTCGTT  1118

seq1: chr6_24614764_24615791
seq2: B6Ng01-066H05.g_67_1091 (reverse)

seq1  GCTCCTCCGGCGCGCGGAGGCCGAGGGAAGGAGATGACGGCGGGCGCCCT  50
      ||||||||||||| ||||| | || ||||||||||||||||||| |||  
seq2  GCTCCTCCGGCGCACGGAGACAGA-GGAAGGAGATGACGGCGGGAGCCTC  49

seq1  CGGGCCGCGCGCCGACAGGGAAGCTCCGGGCTCCCGCCCTGCTCAGCTCC  100
      ||||||||||| ||||||||||||| ||||||||||||||||||||||| 
seq2  CGGGCCGCGCG-CGACAGGGAAGCT-CGGGCTCCCGCCCTGCTCAGCTCG  97

seq1  GGCTGGATGGTCGTTGTCCTAGCACTCCGGCGGCTGCGCTAAACTCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATGGTCGTTGTCCTAGCACTCCGGCGGCTGCGCTAAACTCCCTA  147

seq1  CTCCTCCAGTCCTCTGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAGTCCTCTGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCCG  197

seq1  CACAATCCAACATGGCAGCGGGGGCGGGCGAGACCACGGGACGCGGGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCAACATGGCAGCGGGGGCGGGCGAGACCACGGGACGCGGGACG  247

seq1  CGGGGGAGAGCGCCGGAAACTCGGCAAGGCGGGACACCCCCTCGGTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGAGAGCGCCGGAAACTCGGCAAGGCGGGACACCCCCTCGGTTGCT  297

seq1  GCGTGCCGGGGCGTGTCCTACCCAGGCCCCGCCCCTTCCGGAAGCGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCCGGGGCGTGTCCTACCCAGGCCCCGCCCCTTCCGGAAGCGGCAA  347

seq1  GGCTCATCCCGGTTGAGGTCTTGTTGCAGGCTAGTCGCCCCCACCAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCCCGGTTGAGGTCTTGTTGCAGGCTAGTCGCCCCCACCAATGA  397

seq1  CCACCGCGCGCGTGCGCAGACTCAGAGCGAGGCAGGGCTGGCGGGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGCGCGCGTGCGCAGACTCAGAGCGAGGCAGGGCTGGCGGGTCTCC  447

seq1  TACACTGACTGCCGAGCCGGACGCCCCCTTGCAGCAGCGCCCACCTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGACTGCCGAGCCGGACGCCCCCTTGCAGCAGCGCCCACCTTTGC  497

seq1  GGAGCGTCGGGTCCGCGTAGCCAGTGTTTGTTAGGCATCGAAGCGAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGTCGGGTCCGCGTAGCCAGTGTTTGTTAGGCATCGAAGCGAGACT  547

seq1  CTCAGGCCGCCTGTCAGGGAGATCTAGTTTAGCTGGAGAGAAAGGTCGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCGCCTGTCAGGGAGATCTAGTTTAGCTGGAGAGAAAGGTCGGC  597

seq1  CGGCGTAGTTTCGGTCAGAGCCGCAGGTGCCTCGGGTTTCTGGATCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGTAGTTTCGGTCAGAGCCGCAGGTGCCTCGGGTTTCTGGATCTTAG  647

seq1  TCCCGGCCGCCAACGGGGCGTGGAGGGACATTGCTAAGATCAGGATAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGCCGCCAACGGGGCGTGGAGGGACATTGCTAAGATCAGGATAGAC  697

seq1  ATCTTCAGAGATGTCAAAAACAGAATCGCAAAAGGCGTCCACCACCCGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGAGATGTCAAAAACAGAATCGCAAAAGGCGTCCACCACCCGCC  747

seq1  TGGCGGATCTCGTGGGATAGGTGTGTGTAGTTTTTTCCTTGCCTTGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGATCTCGTGGGATAGGTGTGTGTAGTTTTTTCCTTGCCTTGTGAA  797

seq1  TTGGAAACTACCCCTCTCAATCTTTCTCTATCTCAAGTTGGAAGCACCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACTACCCCTCTCAATCTTTCTCTATCTCAAGTTGGAAGCACCTT  847

seq1  GTCTCTTTAATTCAGGATGAATGCACGCGTTTGGGAATGTCGTGTAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTAATTCAGGATGAATGCACGCGTTTGGGAATGTCGTGTAGGAA  897

seq1  TACACCTTACCTCTTTTTTCCTTACGAGTTAATTTCATGGCTCTGTATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTACCTCTTTTTTCCTTACGAGTTAATTTCATGGCTCTGTATTC  947

seq1  TAGGTGCAGGGACCTAGGGCCTGGTGCATACTCAGCCAGCTGAGCAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCAGGGACCTAGGGCCTGGTGCATACTCAGCCAGCTGAGCAATAT  997

seq1  TCCCAGCAGAAGTAAATAATGAGAATTC  1028
      ||||||||||||||||||||||||||||
seq2  TCCCAGCAGAAGTAAATAATGAGAATTC  1025