BAC Information

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BAC

Clone NameB6Ng01-066K08
Chromosome6 (Build37)
Map Location 124,686,329 - 124,812,380
singlet/doubletdoublet
Overlap genePtpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162
Upstream geneEG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2
Downstream geneCd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066K08.bB6Ng01-066K08.g
ACCDH885769DH885770
length1,144744
definitionDH885769|Mus musculus domesticus DNA, BAC clone: B6Ng01-066K08, 5' end.DH885770|Mus musculus domesticus DNA, BAC clone: B6Ng01-066K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,686,329 - 124,687,500)(124,811,637 - 124,812,380)
sequence
gaattctctggatcttggtatttctgcccgataaatgaacttcacaaggt
ttcctaaattcagacctaaaaagccaataaagcagccaggtgtggtggct
catgcctgtagccccagtattcaggaggctgaagcctgggacagaaggcc
aaatgtgatggtccatgcctgcccttgggaggtcttcctcgacgacataa
cggctacgtggcatagcttcatgtcatcagcttcaacattttaccctgga
ttctgtcttctgattctgcatctgcaggttcagccagctatagacagaaa
gtatgctcccactgggtaggcacagacccttttccctagccacaatttcc
tcaatactacgatacaatgatttgcatagtatttacatcgtattaggtac
tcaaagatgataaaatccacagtagtataggtgtgggttccatgcaaata
catttgtatagtttggtatcttccagtcactctggaatcaatcccccata
gactctggcaagtgactgttttctgttgctgtgtagcctcggctgtcttg
gaactcattctgtagatcaggctagcctggaagttagagacccgcccgcc
tctgcctcctaaattctgggattacaggtgtgtgccagccaactcggggc
tttatgcctgctagccaataaccctaatctttgtttttattatttattta
gacgacatcttgctgtatgtggccaggctagcctcaaactcaagatcctc
ctacctcggcctctcctgtcatcctacaccactcttcccagctgagacaa
ctgtatcgctgttattgtagcatgacaatcctgtttactcgtgatgtgac
tatcccaagtttagaaacaaaagtgaaaactgaaagctcattcggtaact
tgcccacagtcacgaggtccagtgagtgggaagtgaaaaaacccaaagct
gtctgagccagagatctgtttgcaactgcaccatcagctttagagctgcc
gggtaccgaaaagctggagatggagatggcggatacagtcacccccacgg
cagatgacagaacacaaggtgtcatggaacgtgcacttggttgttcgtgt
agccagcaaagcactgaactaacatgcaggctgacccgaagcag
gaattccaaagcagggagaaaaggctaaaaggaatggagacccttccatg
tagtctgcaagtagatgaggtcttatgcctgtgggtaagggggcatctga
cttaaggcaagggaatgctctgaatgaccccagcgaccctcagcatcagt
catttccatagtttcaagggaaagggggtacaagtgagccaagcacagca
caggcctaatgcttgctcctcatctcatcctccctcacagcttgtccagg
tgactgagctccacccctgtgcaccaagacacccaccccaccccccactg
gtcaagcctcgctggagaaagagaccgggaagtcccagcatgagaatcag
agctgcccagccagcttcatagatggggaagcagcctgcttgcctccccc
atcaattacagggataactgagaaaaagccccacccaatatggaggctga
ggactaccgcctctattaattccctgccttctcccctgccctgcccacct
ggccttagctgggtcactcatgcaatgctgagaagtaagcaagacttggg
gtcagcttgcctggctaccaggcaaggactgtgggcatcatgggggtgtg
tgtgagcggggctccagggtgagacctagcccccgcccccaggaattcaa
gggggtgggggtggggccgaggatagaatggctcggggagggttgggggc
ataagaggccccctacgctctaacgcttttgtcctggctgtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124686329_124687500
seq2: B6Ng01-066K08.b_48_1191

seq1  GAATTCTCTGGATCTTGGTATTTCTGCCCGATAAATGAACTTCACAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGATCTTGGTATTTCTGCCCGATAAATGAACTTCACAAGGT  50

seq1  TTCCTAAATTCAGACCTAAAAAGCCAATAAAGCAGCCAGGTGTGGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAATTCAGACCTAAAAAGCCAATAAAGCAGCCAGGTGTGGTGGCT  100

seq1  CATGCCTGTAGCCCCAGTATTCAGGAGGCTGAAGCCTGGGACAGAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTAGCCCCAGTATTCAGGAGGCTGAAGCCTGGGACAGAAGGCC  150

seq1  AAATGTGATGGTCCATGCCTGCCCTTGGGAGGTCTTCCTCGACGACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGATGGTCCATGCCTGCCCTTGGGAGGTCTTCCTCGACGACATAA  200

seq1  CGGCTACGTGGCATAGCTTCATGTCATCAGCTTCAACATTTTACCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTACGTGGCATAGCTTCATGTCATCAGCTTCAACATTTTACCCTGGA  250

seq1  TTCTGTCTTCTGATTCTGCATCTGCAGGTTCAGCCAGCTATAGACAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTCTGATTCTGCATCTGCAGGTTCAGCCAGCTATAGACAGAAA  300

seq1  GTATGCTCCCACTGGGTAGGCACAGACCCTTTTCCCTAGCCACAATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCCCACTGGGTAGGCACAGACCCTTTTCCCTAGCCACAATTTCC  350

seq1  TCAATACTACGATACAATGATTTGCATAGTATTTACATCGTATTAGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTACGATACAATGATTTGCATAGTATTTACATCGTATTAGGTAC  400

seq1  TCAAAGATGATAAAATCCACAGTAGTATAGGTGTGGGTTCCATGCAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATGATAAAATCCACAGTAGTATAGGTGTGGGTTCCATGCAAATA  450

seq1  CATTTGTATAGTTTGGTATCTTCCAGTCACTCTGGAATCAATCCCCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTATAGTTTGGTATCTTCCAGTCACTCTGGAATCAATCCCCCATA  500

seq1  GACTCTGGCAAGTGACTGTTTTCTGTTGCTGTGTAGCCTCGGCTGTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGCAAGTGACTGTTTTCTGTTGCTGTGTAGCCTCGGCTGTCTTG  550

seq1  GAACTCATTCTGTAGATCAGGCTAGCCTGGAAGTTAGAGACCCGCCCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATTCTGTAGATCAGGCTAGCCTGGAAGTTAGAGACCCGCCCGCC  600

seq1  TCTGCCTCCTAAATTCTGGGATTACAGGTGTGTGCCAGCCAACTCGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTAAATTCTGGGATTACAGGTGTGTGCCAGCCAACTCGGGGC  650

seq1  TTTATGCCTGCTAGCCAATAACCCTAATCTTTGTTTTTATTATTTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCTGCTAGCCAATAACCCTAATCTTTGTTTTTATTATTTATTTA  700

seq1  GACGACATCTTGCTGTATGTGGCCAGGCTAGCCTCAAACTCAAGATCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACATCTTGCTGTATGTGGCCAGGCTAGCCTCAAACTCAAGATCCTC  750

seq1  CTACCTCGGCCTCTCCTGTCATCCTACACCACTCTTCCCAGCTGAGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCGGCCTCTCCTGTCATCCTACACCACTCTTCCCAGCTGAGACAA  800

seq1  CTGTATCGCTGTTATTGTAGCATGACAATCCTGTTTACTCGTGATGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCGCTGTTATTGTAGCATGACAATCCTGTTTACTCGTGATGTGAC  850

seq1  TATCCCAAGTTTAGAAACAAAAGTGAAAACTGAAGGCTCATTCGGTAACT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATCCCAAGTTTAGAAACAAAAGTGAAAACTGAAAGCTCATTCGGTAACT  900

seq1  TGCCCACAGTCACGAGGTTCCAGTGAGTGGGAAGGTGAAAAAAACCCAAA  950
      ||||||||||||||||| ||||||||||||||| ||| ||||||||||||
seq2  TGCCCACAGTCACGAGG-TCCAGTGAGTGGGAA-GTG-AAAAAACCCAAA  947

seq1  GCTGTCTGAGGCCAGAGATCTGTTTGCCAACTGCACCATCAGGCTTTAAG  1000
      ||||||||| |||||||||||||||| |||||||||||||| ||||||  
seq2  GCTGTCTGA-GCCAGAGATCTGTTTG-CAACTGCACCATCA-GCTTTA--  992

seq1  GAGCTGCCGGGTACCGAAAAGCCTGGAGATGGAGATGGCGGATACAGGTC  1050
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  GAGCTGCCGGGTACCGAAAAG-CTGGAGATGGAGATGGCGGATACA-GTC  1040

seq1  ACCCCCACGGGCAGATGGACCAAGACACAGAGGTGTCATGGAAACCGTGC  1100
      |||||||| ||||||||   ||  ||||| |||||||||||||  |||||
seq2  ACCCCCAC-GGCAGATG--ACAGAACACA-AGGTGTCATGGAA--CGTGC  1084

seq1  ACTTGGGTTGTTCGGTGTAAGCAGAGCAAAGCAGCTGAACCAAAGCATGC  1150
      |||| |||||||| |||||  |  ||||||||| |||||| ||  |||||
seq2  ACTT-GGTTGTTC-GTGTAGCC--AGCAAAGCA-CTGAACTAA--CATGC  1127

seq1  AGGGGCTGGACCCCCGAAGCAG  1172
      |  |||||    ||||||||||
seq2  A--GGCTG---ACCCGAAGCAG  1144

seq1: chr6_124811637_124812380
seq2: B6Ng01-066K08.g_68_811 (reverse)

seq1  AGGCCAGCCAGGAC-AATGCGTTTGAGCGTAGGGAGGCCTCTTCTGCCCC  49
      ||| |||||||||| || ||||| |||||||||| |||||||| ||||||
seq2  AGGACAGCCAGGACAAAAGCGTTAGAGCGTAGGG-GGCCTCTTATGCCCC  49

seq1  CAACCCTCCCCGAGCCATTCTATCCTCGGCCCCACCCCCACCCCCTTGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTCCCCGAGCCATTCTATCCTCGGCCCCACCCCCACCCCCTTGAA  99

seq1  TTCCTGGGGGCGGGGGCTAGGTCTCACCCTGGAGCCCCGCTCACACACAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGGGCGGGGGCTAGGTCTCACCCTGGAGCCCCGCTCACACACAC  149

seq1  CCCCATGATGCCCACAGTCCTTGCCTGGTAGCCAGGCAAGCTGACCCCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGATGCCCACAGTCCTTGCCTGGTAGCCAGGCAAGCTGACCCCAA  199

seq1  GTCTTGCTTACTTCTCAGCATTGCATGAGTGACCCAGCTAAGGCCAGGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTTACTTCTCAGCATTGCATGAGTGACCCAGCTAAGGCCAGGTG  249

seq1  GGCAGGGCAGGGGAGAAGGCAGGGAATTAATAGAGGCGGTAGTCCTCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCAGGGGAGAAGGCAGGGAATTAATAGAGGCGGTAGTCCTCAGC  299

seq1  CTCCATATTGGGTGGGGCTTTTTCTCAGTTATCCCTGTAATTGATGGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATTGGGTGGGGCTTTTTCTCAGTTATCCCTGTAATTGATGGGGG  349

seq1  AGGCAAGCAGGCTGCTTCCCCATCTATGAAGCTGGCTGGGCAGCTCTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCAGGCTGCTTCCCCATCTATGAAGCTGGCTGGGCAGCTCTGAT  399

seq1  TCTCATGCTGGGACTTCCCGGTCTCTTTCTCCAGCGAGGCTTGACCAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCTGGGACTTCCCGGTCTCTTTCTCCAGCGAGGCTTGACCAGTG  449

seq1  GGGGGTGGGGTGGGTGTCTTGGTGCACAGGGGTGGAGCTCAGTCACCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGGTGGGTGTCTTGGTGCACAGGGGTGGAGCTCAGTCACCTGG  499

seq1  ACAAGCTGTGAGGGAGGATGAGATGAGGAGCAAGCATTAGGCCTGTGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGTGAGGGAGGATGAGATGAGGAGCAAGCATTAGGCCTGTGCTG  549

seq1  TGCTTGGCTCACTTGTACCCCCTTTCCCTTGAAACTATGGAAATGACTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTCACTTGTACCCCCTTTCCCTTGAAACTATGGAAATGACTGA  599

seq1  TGCTGAGGGTCGCTGGGGTCATTCAGAGCATTCCCTTGCCTTAAGTCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGGTCGCTGGGGTCATTCAGAGCATTCCCTTGCCTTAAGTCAGA  649

seq1  TGCCCCCTTACCCACAGGCATAAGACCTCATCTACTTGCAGACTACATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCTTACCCACAGGCATAAGACCTCATCTACTTGCAGACTACATGG  699

seq1  AAGGGTCTCCATTCCTTTTAGCCTTTTCTCCCTGCTTTGGAATTC  744
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTCCATTCCTTTTAGCCTTTTCTCCCTGCTTTGGAATTC  744