BAC Information

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BAC

Clone NameB6Ng01-067E12
Chromosome6 (Build37)
Map Location 22,373,328 - 22,514,123
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
Downstream geneLOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067E12.bB6Ng01-067E12.g
ACCDH886220DH886221
length1,0411,146
definitionDH886220|Mus musculus domesticus DNA, BAC clone: B6Ng01-067E12, 5' end.DH886221|Mus musculus domesticus DNA, BAC clone: B6Ng01-067E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,373,328 - 22,374,367)(22,512,949 - 22,514,123)
sequence
gaattctctctctctttatctctctctctctctctttctgtgtgtatctg
tgtctgtctgtctctcacaaaactcccaatggaattctatgtttatgtgt
atgtgtgtatctgtggggaggcacacatgtgtgtgagctcccatctgtct
cgtctgtctgtgtgtctgtctgtctgtctcctacaaaactcttcaattag
agccagtcttttctacttcccttcttccctttgttcctccctccccccac
ttcccctttctttcaccttggtttcttttcttgtctttttctttttcctt
attgtttaatttttaactccgcccacctcccacccccccaccccccattt
ttgccagaagcagctgtctaaccacaagtttcctcacagttttcatttcc
ctgtacacacagactggcaaccgaatgaattatcaatccaccctgaaaac
tgtgacaggaacccggctgttggatacgtaacagctgattactatagtgt
actcattacagacacaccactcttgagataatgttattgaggtccctgct
attttataactttatagttttaagttgactgtgccaagatctgttaacgt
catcaatgtactttgtaaatttaacatgtccatcaaactaataacattgt
gtcagtcttgaacttgtgttcttagtaaagaattgtccccaagtggagat
taaataagagaaaagtacagtgtgtgtttgccctgtagcacatagattgc
tcatgttgatactaatagaaaatagataaaatttgcaatggggaataggg
aagccagtgaaagattcaccctttcagccagtagaaagagagttcattta
gcagggtggaaagagtcatgtcgttccccaccccaccccccttagcacct
tgctttcagttccttaaatctttctagttgactcttgttccaacaccccg
ttcactgttctaaggactcctcatgatgtcgaaagctgagagatggctcc
accctcacactgttcctgctgttgctcttctggtactggaa
gaattcatgccaataaaacaacaaaatgttcttttaccattgatgataat
gtgaaaattggggaataccttgacttccttgtaattagcaatggtgaacc
ttctggtaatttgcaaacaaaactattaaaatttaggtaaataagaattt
ttcaagtttattcaggatcagcaagacagctcagtggtaaaagtatttgt
caccaagtctgatgacctcagttcagaccctgggcccacatactagaagg
ggagactccgtctacacaagctttcctcagatttctacacacacactgta
gatatgctcacacacacactctgtagtattgtaataaaaatattttaaaa
tatcttcactataaaagtaaatttctggtattttcccaaacttgaattat
tttattttattttatatttacatgtaatatatttaagtgtgaagacttcc
tacccacctcattcttttgctgcttgcagaaatatatagccaaagtattc
atcactgtgaaacaacagggcttggttttcattttcctttactgttaggt
ttgttttttttttaatgcattcaagtgtctttttaccttctggctttatt
ttgtacactccatgtcactttgaaatgaggactatcagctattctttcat
tttaacagtgtgtgactcttagatagcacttagggttaattgaaattttc
tatctggcaacattctgaaacttgaagatcaagtatatcaataaaccaat
attattattttccacttctgatgttcttttgaattagctacaggagtctg
agtcttgtcttttcctaagactgatcatcaatataaaaatctttgttatg
gtaatatagtaaggcataaatttatttttatgagaaagatatgatgtcct
tagatgtgttgtgataaaataaatttatgtctacaaacaattaatgggca
agtttgagatttacttaaattacccactataattgtttatgtcctattta
gtgtcatatctacgctggaacaaaggttccattgattacatcgataattt
tccataattagtaatttactttacatcagatcgaactgccccttcctacc
tccactcctttccaccccccttttccttaaaggaaggaaaggtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_22373328_22374367
seq2: B6Ng01-067E12.b_48_1076

seq1  GAATTCTCTCTCTCTTTATCTCTCTCTCTCTCTCTTTCTGTGTGTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTCTTTATCTCTCTCTCTCTCTCTTTCTGTGTGTATCTG  50

seq1  TGTCTGTCTGTCTCTCACAAAACTCCCAATGGAATTCTATGTTTATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGTCTCTCACAAAACTCCCAATGGAATTCTATGTTTATGTGT  100

seq1  ATGTGTGTATCTGTGGGGAGGCACACATGTGTGTGAGCTCCCATCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTATCTGTGGGGAGGCACACATGTGTGTGAGCTCCCATCTGTCT  150

seq1  CGTCTGTCTGTGTGTCTGTCTGTCTGTCTCCTACAAAACTCTTCAATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTCTGTGTGTCTGTCTGTCTGTCTCCTACAAAACTCTTCAATTAG  200

seq1  AGCCAGTCTTTTCTACTTCCCTTCTTCCCTTTGTTCCTCCCTCCCCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCTTTTCTACTTCCCTTCTTCCCTTTGTTCCTCCCTCCCCCCAC  250

seq1  TTCCCCTTTCTTTCACCTTGGTTTCTTTTCTTGTCTTTTTCTTTTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTCTTTCACCTTGGTTTCTTTTCTTGTCTTTTTCTTTTTCCTT  300

seq1  ATTGTTTAATTTTTAACTCCGCCCACCTCCCACCCCCCCACCCCCCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAATTTTTAACTCCGCCCACCTCCCACCCCCCCACCCCCCATTT  350

seq1  TTGCCAGAAGCAGCTGTCTAACCACAAGTTTCCTCACAGTTTTCATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGAAGCAGCTGTCTAACCACAAGTTTCCTCACAGTTTTCATTTCC  400

seq1  CTGTACACACAGACTGGCAACCGAATGAATTATCAATCCACCCTGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACACAGACTGGCAACCGAATGAATTATCAATCCACCCTGAAAAC  450

seq1  TGTGACAGGAACCCGGCTGTTGGATACGTAACAGCTGATTACTATAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGGAACCCGGCTGTTGGATACGTAACAGCTGATTACTATAGTGT  500

seq1  ACTCATTACAGACACACCACTCTTGAGATAATGTTATTGAGGTCCCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTACAGACACACCACTCTTGAGATAATGTTATTGAGGTCCCTGCT  550

seq1  ATTTTATAACTTTATAGTTTTAAGTTGACTGTGCCAAGATCTGTTAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAACTTTATAGTTTTAAGTTGACTGTGCCAAGATCTGTTAACGT  600

seq1  CATCAATGTACTTTGTAAATTTAACATGTCCATCAAACTAATAACATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGTACTTTGTAAATTTAACATGTCCATCAAACTAATAACATTGT  650

seq1  GTCAGTCTTGAACTTGTGTTCTTAGTAAAGAATTGTCCCCAAGTGGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTTGAACTTGTGTTCTTAGTAAAGAATTGTCCCCAAGTGGAGAT  700

seq1  TAAATAAGAG-AAAGTACAGTGTGTGTTTGCCCTGTAGCACATAGATTGC  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGAGAAAAGTACAGTGTGTGTTTGCCCTGTAGCACATAGATTGC  750

seq1  TCATGTTGATACTAATAGAAAAATAGATAAAATTTGCAATGGGGAATAGG  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATGTTGATACTAATAG-AAAATAGATAAAATTTGCAATGGGGAATAGG  799

seq1  GAAGCCAGTGAAAGAATTCACCCTTCAGGCCAGTAGAAAGAAGAGTTCAT  849
      |||||||||||||| ||||||||||   |||||||||||| |||||||||
seq2  GAAGCCAGTGAAAG-ATTCACCCTTTCAGCCAGTAGAAAG-AGAGTTCAT  847

seq1  TTAGCAGGGTGGAAAGAGTCATGTCGTTCCCCACCCCCACCCCCCTTAGC  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAGCAGGGTGGAAAGAGTCATGTCGTTCCCCA-CCCCACCCCCCTTAGC  896

seq1  ACCTTGCTTTCAGTCCTTCAAATCTTTTCTAGTTGACTCCTGTTCCAAAC  949
      |||||||||||||| | | ||||| |||||||||||||| |||||| |||
seq2  ACCTTGCTTTCAGTTCCTTAAATC-TTTCTAGTTGACTCTTGTTCC-AAC  944

seq1  ACCCCCGTTCACTGTTCTAAGGACTCCTCCATGATGTCGGAGAGCTGAGA  999
      | |||||||||||||||||||||||||| ||||||||| || ||||||| 
seq2  A-CCCCGTTCACTGTTCTAAGGACTCCT-CATGATGTC-GAAAGCTGAG-  990

seq1  AGATGGCTCCACCCTCAGCACTGTTTCCTGCTGTTGCTCTT  1040
      ||||||||||||||||| ||||| |||||||||||||||||
seq2  AGATGGCTCCACCCTCA-CACTG-TTCCTGCTGTTGCTCTT  1029

seq1: chr6_22512949_22514123
seq2: B6Ng01-067E12.g_68_1213 (reverse)

seq1  GAGACCTTTCCTTCATTTAAGAGAAAGAGGGGGTGTGGAAAAAAGTGAGG  50
      |||||||||||||| |||||| |||| |||||| |||||||  ||||   
seq2  GAGACCTTTCCTTCCTTTAAG-GAAA-AGGGGG-GTGGAAAGGAGTG---  44

seq1  TGAGAGGGAGGGAGAGGGGAAGTTGTGATCTGGATGTAAAGTAAATTAAT  100
         |||| |||   ||||| ||||  ||||| ||||||||||||||| | 
seq2  ---GAGGTAGG--AAGGGGCAGTT-CGATCT-GATGTAAAGTAAATT-AC  86

seq1  TAATTAATGAAAAAATTATTCGATGTAACTCAATAGATACTTTGTTCCAG  150
      ||||||  |  ||||||| ||||||||| ||||| ||  |||||||||||
seq2  TAATTATGG--AAAATTA-TCGATGTAA-TCAATGGAACCTTTGTTCCAG  132

seq1  CCGTAGATATAGACACTAAAATAAGGACATAAACATTTATAGTGTGGTAA  200
       ||||||||| |||||||||   |||||||||||| |||||||| |||||
seq2  -CGTAGATAT-GACACTAAA--TAGGACATAAACAATTATAGTG-GGTAA  177

seq1  TTTAAGTAAATTCTCAAAACTTGCCCATTTAATTGTTTGTAGACATAAAA  250
      |||||||||| |||| ||||||||||| |||||||||||||||||| |||
seq2  TTTAAGTAAA-TCTC-AAACTTGCCCA-TTAATTGTTTGTAGACAT-AAA  223

seq1  TTTATTTTTATCACAACACATCTAAGGACATCATATCTTTCTCATTAAAA  300
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTA-TTTTATCACAACACATCTAAGGACATCATATCTTTCTCA-TAAAA  271

seq1  ATAAAATTTATGCCTTACTATATTACCATAACAAAGATTTTTATATTTGA  350
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AT-AAATTTATGCCTTACTATATTACCATAACAAAGATTTTTATA-TTGA  319

seq1  TGATCAGTCTTAGG-AAAGACAAGACTCAGACTCCTGTAGCTAATTCAAA  399
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGATCAGTCTTAGGAAAAGACAAGACTCAGACTCCTGTAGCTAATTCAAA  369

seq1  AGAACATCAGAAGTGG-AAATAATAATATTGGTTTATTGATATACTTGAT  448
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAACATCAGAAGTGGAAAATAATAATATTGGTTTATTGATATACTTGAT  419

seq1  CTTCAAGTTTCAGAATGTTGCCAGATAGAAAATTTCAATTAACCCTAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTTTCAGAATGTTGCCAGATAGAAAATTTCAATTAACCCTAAGT  469

seq1  GCTATCTAAGAGTCACACACTGTTAAAATGAAAGAATAGCTGATAGTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTAAGAGTCACACACTGTTAAAATGAAAGAATAGCTGATAGTCCT  519

seq1  CATTTCAAAGTGACATGGAGTGTACAAAATAAAGCCAGAAGGTAAAAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAAGTGACATGGAGTGTACAAAATAAAGCCAGAAGGTAAAAAGA  569

seq1  CACTTGAATGCATTAAAAAAAAAACAAACCTAACAGTAAAGGAAAATGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAATGCATTAAAAAAAAAACAAACCTAACAGTAAAGGAAAATGAA  619

seq1  AACCAAGCCCTGTTGTTTCACAGTGATGAATACTTTGGCTATATATTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCCCTGTTGTTTCACAGTGATGAATACTTTGGCTATATATTTCT  669

seq1  GCAAGCAGCAAAAGAATGAGGTGGGTAGGAAGTCTTCACACTTAAATATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGCAAAAGAATGAGGTGGGTAGGAAGTCTTCACACTTAAATATA  719

seq1  TTACATGTAAATATAAAATAAAATAAAATAATTCAAGTTTGGGAAAATAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTAAATATAAAATAAAATAAAATAATTCAAGTTTGGGAAAATAC  769

seq1  CAGAAATTTACTTTTATAGTGAAGATATTTTAAAATATTTTTATTACAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTTACTTTTATAGTGAAGATATTTTAAAATATTTTTATTACAAT  819

seq1  ACTACAGAGTGTGTGTGTGAGCATATCTACAGTGTGTGTGTAGAAATCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAGTGTGTGTGTGAGCATATCTACAGTGTGTGTGTAGAAATCTG  869

seq1  AGGAAAGCTTGTGTAGACGGAGTCTCCCCTTCTAGTATGTGGGCCCAGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTTGTGTAGACGGAGTCTCCCCTTCTAGTATGTGGGCCCAGGG  919

seq1  TCTGAACTGAGGTCATCAGACTTGGTGACAAATACTTTTACCACTGAGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGAGGTCATCAGACTTGGTGACAAATACTTTTACCACTGAGCT  969

seq1  GTCTTGCTGATCCTGAATAAACTTGAAAAATTCTTATTTACCTAAATTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTGATCCTGAATAAACTTGAAAAATTCTTATTTACCTAAATTTT  1019

seq1  AATAGTTTTGTTTGCAAATTACCAGAAGGTTCACCATTGCTAATTACAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTGTTTGCAAATTACCAGAAGGTTCACCATTGCTAATTACAAG  1069

seq1  GAAGTCAAGGTATTCCCCAATTTTCACATTATCATCAATGGTAAAAGAAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAAGGTATTCCCCAATTTTCACATTATCATCAATGGTAAAAGAAC  1119

seq1  ATTTTGTTGTTTTATTGGCATGAATTC  1175
      |||||||||||||||||||||||||||
seq2  ATTTTGTTGTTTTATTGGCATGAATTC  1146