BAC Information

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BAC

Clone NameB6Ng01-067M03
Chromosome6 (Build37)
Map Location 26,767,922 - 26,904,233
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067M03.bB6Ng01-067M03.g
ACCDH886544DH886545
length1,0411,143
definitionDH886544|Mus musculus domesticus DNA, BAC clone: B6Ng01-067M03, 5' end.DH886545|Mus musculus domesticus DNA, BAC clone: B6Ng01-067M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,767,922 - 26,768,969)(26,903,064 - 26,904,233)
sequence
gaattcagttctcttaatttttgtttgtttgttttttgtttgttttttgc
ttttgtttttgtttttgttttttttttcccctttggctttttgagacagg
gtttctctgtgtagccctgactgtcctggaactcactttgtagaccaggc
tggcctcgaactcagaaatctgcctgcctctatctcccaggtgctgggat
taaaggcgtgtgccaccacgcccagctgttctcttgttttaactgtttaa
gaaagcacaatatgaactgatggggttttttgtttgtttgtttgtttgtt
tgtttgtttgttttttgagaactaatcaatgtcattgctttcttgcacac
taatttcataagaaatatttacagaggaaaataatggcaattctggacta
ctgaatgtttcatacttgaattaagcaggcactccaaatacaaaaagcag
aatgaagaagtttgcggtttccccattattttgcactgggaatatctgga
cttctatattaattcgtggttttgcatttagagtaaaacactagtctttg
cttagtattggttataactgaaaaaatggaatttgctgcattcatttagc
tttagccatcttgttactgataccacaaatcttgactgctccttcaagga
gttcaaaattccatattttttatattcaaattctttatgtgttattgggt
ctccttttgatgttagacagctaactcactgattagacctctgacaaaaa
ttgacgtataatgtctctaactttctttcaagttcattatgacatattct
cattttcccaactggtccttccctcctaattattctttattatattaaca
tttgaataaaaggccatcacagaagataattgatacagtttttacttcta
tcacttttattacatgtgatgcttaatctagttgtagattttgtatagag
tagagactagggatagtaaagtgcaattttgaattcattatagggataga
gatgttttggaaaggctatcctgtgtgctggttctctattg
gaattctcttataattccccaattcagacatatcttgagaggattttcct
tgagatagaatttttattaagccctgaaatgctgtgtttttcccatgtat
tacatttcggtgactatttttcactgtcattaatgattgtagtggctatt
cctggttgtcaacttgacaatatttggaatgaactacaatccggaattgg
aaggctcaccagtgacccttatctggaggcttggagatccttatctggat
cttggtttgaagatcttgagccatagtggctatggattccagaagattga
atctccgagtttaaggaacacacctttaatctgggctacaccttctgctg
gagacaatataaggacattggaagaagggagtctagctcttgctcttgct
cctttgcctgcttgccgtgtgagactgagtaactgctagatccttggact
tccattcacagctgcgactgaacaattgttgggaattgggctgccgactg
taagtcatcaataaattcctttactatctagagactatccataagttctg
tgactctagagaaccctgactaatacaatgatgattaagataattatatt
cctgaataagaaacccttatcaaattatcaccttaatatctggtgttggg
aatgtttcaaaattcttccatagaatacaaaccctaggggctagagagat
ggcttgctgttaagagaacagactgctcttccagaggtccgtagttcaat
taccagcaaccacatggtggctcacaactatctgtaatgggatctgatgc
cctcttctggtgtggctgaagacagctacagtgtactcatgtaaataaaa
taaaataaataaatctataaaaaattaaaaaagaatacaaacctagaata
cttcttgaccagctcatgatacttcctccttgcagctcttactccctggt
gaacctctctcatgtccagcccctctattatacatacttaccagttctct
cattaaaagctgtgcttttcaggagtccagattttaataccccatttcta
tgactcatagctcatagcccaaacactgattgattcagtactacactcac
actatttttctattatgtcgaaattcttatattccgtgcccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26767922_26768969
seq2: B6Ng01-067M03.b_44_1084

seq1  GAATTCAGTTCTCTTAATTTTTGTTTGTTTGTTTTTTGTTTGTTTTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCTTAATTTTTGTTTGTTTGTTTTTTGTTTGTTTTTTGC  50

seq1  TTTTGTTTTTGTTTTTGTTTTTTTTTTCCCCTTTGGCTTTTTGAGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGTTTTTGTTTTTTTTTTCCCCTTTGGCTTTTTGAGACAGG  100

seq1  GTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGTAGACCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGTAGACCAGGC  150

seq1  TGGCCTCGAACTCAGAAATCTGCCTGCCTCTATCTCCCAGGTGCTGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGAACTCAGAAATCTGCCTGCCTCTATCTCCCAGGTGCTGGGAT  200

seq1  TAAAGGCGTGTGCCACCACGCCCAGCTGTTCTCTTGTTTTAACTGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGTGCCACCACGCCCAGCTGTTCTCTTGTTTTAACTGTTTAA  250

seq1  GAAAGCACAATATGAACTGATGGGGTTTTTTGTTTGTTTGTTTGTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACAATATGAACTGATGGGGTTTTTTGTTTGTTTGTTTGTTTGTT  300

seq1  TGTTTGTTTGTTTTTTGAGAACTAATCAATGTCATTGCTTTCTTGCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTTGAGAACTAATCAATGTCATTGCTTTCTTGCACAC  350

seq1  TAATTTCATAAGAAATATTTACAGAGGAAAATAATGGCAATTCTGGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATAAGAAATATTTACAGAGGAAAATAATGGCAATTCTGGACTA  400

seq1  CTGAATGTTTCATACTTGAATTAAGCAGGCACTCCAAATACAAAAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTTTCATACTTGAATTAAGCAGGCACTCCAAATACAAAAAGCAG  450

seq1  AATGAAGAAGTTTGCGGTTTCCCCATTATTTTGCACTGGGAATATCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAGTTTGCGGTTTCCCCATTATTTTGCACTGGGAATATCTGGA  500

seq1  CTTCTATATTAATTCGTGGTTTTGCATTTAGAGTAAAACACTAGTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATATTAATTCGTGGTTTTGCATTTAGAGTAAAACACTAGTCTTTG  550

seq1  CTTAGTATTGGTTATAACTGAAAAAATGGAATTTGCTGCATTCATTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATTGGTTATAACTGAAAAAATGGAATTTGCTGCATTCATTTAGC  600

seq1  TTTAGCCATCTTGTTACTGATACCACAAATCTTGACTGCTCCTTCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCATCTTGTTACTGATACCACAAATCTTGACTGCTCCTTCAAGGA  650

seq1  GTTCAAAATTCCATATTTTTTATATTCAAATTCTTTATGTGTTATTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAATTCCATATTTTTTATATTCAAATTCTTTATGTGTTATTGGGT  700

seq1  CTCCTTTTGATGTTAGACAGCTAACTCACTGATTAGACCTCTGACAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTGATGTTAGACAGCTAACTCACTGATTAGACCTCTGACAAAAA  750

seq1  TTGACGTATAATGTCTCTAACTTTCTTTCAAGTTCATTATGACATATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGTATAATGTCTCTAACTTTCTTTCAAGTTCATTATGACATATTCT  800

seq1  CATTTTCCCAACTGGTCCTTCCCTCCTAATTATTCTTTATTATATTAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCAACTGGTCCTTCCCTCCTAATTATTCTTTATTATATTAACA  850

seq1  TTTGAATAAAAGGCCATCACAGAAGAATAATTGATACAGTTTTTACTTCT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGAATAAAAGGCCATCACAGAAG-ATAATTGATACAGTTTTTACTTCT  899

seq1  ATCACTTTTATTACATGTGATGCTTAATCTTAGTTGTTAGATTTTTGTAT  950
      ||||||||||||||||||||||||||||| |||||| |||| ||||||||
seq2  ATCACTTTTATTACATGTGATGCTTAATC-TAGTTG-TAGA-TTTTGTAT  946

seq1  AGAGTAGAGACTAGGGAATTAGTAAAGTGCAATTTTGAATTCATTAGAAG  1000
      |||||||||||||||||  |||||||||||||||||||||||||||  ||
seq2  AGAGTAGAGACTAGGGA--TAGTAAAGTGCAATTTTGAATTCATTA-TAG  993

seq1  GAATAGAGATGTTTTGGTAAGGCTATTCTGTTGTGCTGTTTCT-TATTG  1048
      | ||||||||||||||| |||||||| ||| ||||||| |||| |||||
seq2  GGATAGAGATGTTTTGGAAAGGCTATCCTG-TGTGCTGGTTCTCTATTG  1041

seq1: chr6_26903064_26904233
seq2: B6Ng01-067M03.g_66_1208 (reverse)

seq1  TAGGGCACGGGGATATTAAGAAATATTTTGGACAATAATAGTAAAAATAA  50
      |||||||| || ||| ||||||    ||| ||| ||||||| |||||| |
seq2  TAGGGCAC-GGAATA-TAAGAA----TTTCGAC-ATAATAG-AAAAAT-A  41

seq1  GTGGTGAGTTTGTAGTACTGAATTTCAATCAGTGTTTGGGCTTATGAGCT  100
      || |||||  ||||||||||||  ||||||||||||||||| ||||||| 
seq2  GT-GTGAG--TGTAGTACTGAA--TCAATCAGTGTTTGGGC-TATGAGC-  84

seq1  TATGAGTCATAGAAATTGGGGTATATAAAATCTGGACTCCTTGAAAAAGC  150
      ||||||||||||||| |||||||| ||||||||||||||||   ||||||
seq2  TATGAGTCATAGAAA-TGGGGTAT-TAAAATCTGGACTCCT--GAAAAGC  130

seq1  ACAGGCTTTTAATTGAAGAGAACTGGTAAGTATTGTAATAATAGAGGGGC  200
      ||| |||||||||   |||||||||||||||| ||| |||||||||||||
seq2  ACA-GCTTTTAAT--GAGAGAACTGGTAAGTA-TGT-ATAATAGAGGGGC  175

seq1  TGGACATGAGAGAGGTTCACCAGGGAGTAAGAGCTGCAAGGAGGAAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGAGAGAGGTTCACCAGGGAGTAAGAGCTGCAAGGAGGAAGTAT  225

seq1  CATGAGCTGGTCAAGAAGTATTCTAGGTTTTGTATTCTTTTTTAATTTTT  300
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  CATGAGCTGGTCAAGAAGTATTCTAGG-TTTGTATTCTTTTTTAA-TTTT  273

seq1  TTATAGATTTATTTATTTTATTTTATTTACATGAGTACACTGTAGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATTTATTTATTTTATTTTATTTACATGAGTACACTGTAGCTGTC  323

seq1  TTCAGCCACACCAGAAGAGGGCATCAGATCCCATTACAGATAGTTGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCACACCAGAAGAGGGCATCAGATCCCATTACAGATAGTTGTGAG  373

seq1  CCACCATGTGGTTGCTGGTAATTGAACTACGGACCTCTGGAAGAGCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGTTGCTGGTAATTGAACTACGGACCTCTGGAAGAGCAGTC  423

seq1  TGTTCTCTTAACAGCAAGCCATCTCTCTAGCCCCTAGGGTTTGTATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTTAACAGCAAGCCATCTCTCTAGCCCCTAGGGTTTGTATTCTA  473

seq1  TGGAAGAATTTTGAAACATTCCCAACACCAGATATTAAGGTGATAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAATTTTGAAACATTCCCAACACCAGATATTAAGGTGATAATTTG  523

seq1  ATAAGGGTTTCTTATTCAGGAATATAATTATCTTAATCATCATTGTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTTTCTTATTCAGGAATATAATTATCTTAATCATCATTGTATTA  573

seq1  GTCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTCTCTAGATAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTCTCTAGATAGTAA  623

seq1  AGGAATTTATTGATGACTTACAGTCGGCAGCCCAATTCCCAACAATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTATTGATGACTTACAGTCGGCAGCCCAATTCCCAACAATTGTT  673

seq1  CAGTCGCAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGCAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTC  723

seq1  ACACGGCAAGCAGGCAAAGGAGCAAGAGCAAGAGCTAGACTCCCTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCAAGCAGGCAAAGGAGCAAGAGCAAGAGCTAGACTCCCTTCTTC  773

seq1  CAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTG  823

seq1  TGTTCCTTAAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTAAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTATGG  873

seq1  CTCAAGATCTTCAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATCTTCAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGAT  923

seq1  AAGGGTCACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCATTCCAAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCATTCCAAATA  973

seq1  TTGTCAAGTTGACAACCAGGAATAGCCACTACAATCATTAATGACAGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGTTGACAACCAGGAATAGCCACTACAATCATTAATGACAGTGA  1023

seq1  AAAATAGTCACCGAAATGTAATACATGGGAAAAACACAGCATTTCAGGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTCACCGAAATGTAATACATGGGAAAAACACAGCATTTCAGGGC  1073

seq1  TTAATAAAAATTCTATCTCAAGGAAAATCCTCTCAAGATATGTCTGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAATTCTATCTCAAGGAAAATCCTCTCAAGATATGTCTGAATT  1123

seq1  GGGGAATTATAAGAGAATTC  1170
      ||||||||||||||||||||
seq2  GGGGAATTATAAGAGAATTC  1143