BAC Information

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BAC

Clone NameB6Ng01-067O21
Chromosome6 (Build37)
Map Location 39,101,430 - 39,206,684
singlet/doubletdoublet
Overlap geneA630082K20Rik
Upstream geneD630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik
Downstream geneSlc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067O21.bB6Ng01-067O21.g
ACCDH886666DH886667
length1,0181,128
definitionDH886666|Mus musculus domesticus DNA, BAC clone: B6Ng01-067O21, 5' end.DH886667|Mus musculus domesticus DNA, BAC clone: B6Ng01-067O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,101,430 - 39,102,447)(39,205,549 - 39,206,684)
sequence
gaattccctgagatttaactggtttgccattttcctcctagaagaatcaa
attcagagcttgttttatgaaaaggctcttatacatatacttgactaaac
aatcaaccataaaaatactttaaaaaacaaagcacattcttaaggcaacg
tcaaagcctcggctttctggaggcctttattcccctctcgtccacacact
ttgtgaacagtaagtacatttccttgttttatttggggaggattttgtgg
gggcgtctggaggggacttgccttagcttccatgaactaggattacaagc
atgcaccaccacactgagctgccatcttagatctacgatattacgttgaa
gttgacattttcagaaatgatactcctgtttactcaacgattaattttga
gtttattctgttttggttttactgtgcacgagacacatatatatgcacat
atagttacagataatattctatatgttttataaacatatgtttatatatt
ttatatttgataactttttgataggaaacccatttacatgccgttatttt
tactacctctgaaaatcactaactgttgtacccaaggatagtgaagctgg
cactgcggcatcaagggctggagatgtagctcagaggtagagtacatgct
tgacaagcacaaggccctgggttcagtccccgcaccaaggaacaaaagga
gatgactgatgttttttgcagatgtataatgccttccattcttgacactg
gttgtaagccaacctgtaactgctgaactatgtctgcagctcctcccatt
ctacaaacatagtcctaatgtaagatgttaaattacacgatggcttttca
atgaatttcctcttatttcagactacacactaatcaagctattttcttga
agaactactgcaatggaaaaccctttttttttttttttttcaatactgac
aaagctcttatattttatgggcttttatcaaagtcatagcccctcagttg
ttccagcattttggcaaa
gaattcctcctgggaactctgtgccgagtgggatctgcccactgtgtggc
tgcttcctgggtaattaggggagctccaggaaacctctagttctgtttcc
ttctctctaaacactggaccttaaacaggtggagaaggtctgttgttgat
ttgcgggtataccaccaccaacgccaacggcacggagttcaaaggttggg
ctccggagcacctgctcagaaaaaagcagatcggccttctatacccctcg
gtcttctccaccgttccaccgccagccaaaatgtgaagaagtgctccttt
ctggtagtggctttcaaacaccaaatatgcaaacggagggttgaagccca
gggagcagagggctgcccatgagatgcgtttcaggccggtcccacctgcc
cagtgttagatggttgtttgttaggcagagtcttcctaggtacccagttg
ccttggcactcgatgtggagcccaggatggtctcgaatttgtggtaatcc
tcctgtctcagccttccaggtgctgagactataggcctgtgccaccacag
cctgctccattctaggcacttgttcactgtttggtcgtgtgaagcagaaa
ttaagaaggtggtagaatgagaacttttctggggagatattttaggtcct
gggtgtatgtcatgagtctctgaatgctggattggtgtgcctgtagctcc
ctgggctgtatagtttacacaatggcctgtaacaacttctcagagaagag
ctccctttgaagtgtgggcaggatttgcattctcctgacttcactagtct
gttgtctcagtggctcctttgatgtggtggtgaccaggcttattagagat
cagccaccaggaccaaatagatcaaccatcccttcaagttcacctcggcg
ggatgtacatgtcaaaaaggcaactgagatatggcagaaagtatcgcaaa
tttcctgtttctgtctttattacgtgattctgaacacttttttttttttc
cagagtgggctagtttcttgagtctaggaaattataacaaaacttgcgag
cctgagtgccctgcttccgtatgtacttggtttaaattcccaagtaaccc
tgaggctgtggactgtccaactttcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_39101430_39102447
seq2: B6Ng01-067O21.b_50_1067

seq1  GAATTCCCTGAGATTTAACTGGTTTGCCATTTTCCTCCTAGAAGAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAGATTTAACTGGTTTGCCATTTTCCTCCTAGAAGAATCAA  50

seq1  ATTCAGAGCTTGTTTTATGAAAAGGCTCTTATACATATACTTGACTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGCTTGTTTTATGAAAAGGCTCTTATACATATACTTGACTAAAC  100

seq1  AATCAACCATAAAAATACTTTAAAAAACAAAGCACATTCTTAAGGCAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCATAAAAATACTTTAAAAAACAAAGCACATTCTTAAGGCAACG  150

seq1  TCAAAGCCTCGGCTTTCTGGAGGCCTTTATTCCCCTCTCGTCCACACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCTCGGCTTTCTGGAGGCCTTTATTCCCCTCTCGTCCACACACT  200

seq1  TTGTGAACAGTAAGTACATTTCCTTGTTTTATTTGGGGAGGATTTTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACAGTAAGTACATTTCCTTGTTTTATTTGGGGAGGATTTTGTGG  250

seq1  GGGCGTCTGGAGGGGACTTGCCTTAGCTTCCATGAACTAGGATTACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTCTGGAGGGGACTTGCCTTAGCTTCCATGAACTAGGATTACAAGC  300

seq1  ATGCACCACCACACTGAGCTGCCATCTTAGATCTACGATATTACGTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCACCACACTGAGCTGCCATCTTAGATCTACGATATTACGTTGAA  350

seq1  GTTGACATTTTCAGAAATGATACTCCTGTTTACTCAACGATTAATTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATTTTCAGAAATGATACTCCTGTTTACTCAACGATTAATTTTGA  400

seq1  GTTTATTCTGTTTTGGTTTTACTGTGCACGAGACACATATATATGCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCTGTTTTGGTTTTACTGTGCACGAGACACATATATATGCACAT  450

seq1  ATAGTTACAGATAATATTCTATATGTTTTATAAACATATGTTTATATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACAGATAATATTCTATATGTTTTATAAACATATGTTTATATATT  500

seq1  TTATATTTGATAACTTTTTGATAGGAAACCCATTTACATGCCGTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGATAACTTTTTGATAGGAAACCCATTTACATGCCGTTATTTT  550

seq1  TACTACCTCTGAAAATCACTAACTGTTGTACCCAAGGATAGTGAAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCTCTGAAAATCACTAACTGTTGTACCCAAGGATAGTGAAGCTGG  600

seq1  CACTGCGGCATCAAGGGCTGGAGATGTAGCTCAGAGGTAGAGTACATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGGCATCAAGGGCTGGAGATGTAGCTCAGAGGTAGAGTACATGCT  650

seq1  TGACAAGCACAAGGCCCTGGGTTCAGTCCCCGCACCAAGGAACAAAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCACAAGGCCCTGGGTTCAGTCCCCGCACCAAGGAACAAAAGGA  700

seq1  GATGACTGATGTTTTTTGCAGATGTATAATGCCTTCCATTCTTGACACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGATGTTTTTTGCAGATGTATAATGCCTTCCATTCTTGACACTG  750

seq1  GTTGTAAGCCAACCTGTAACTGCTGAACTATGTCTGCAGCTCCTCCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGCCAACCTGTAACTGCTGAACTATGTCTGCAGCTCCTCCCATT  800

seq1  CTACAAACATAGTCCTAATGTAAGATGTTAAATTACACGATGGC-TTTCA  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTACAAACATAGTCCTAATGTAAGATGTTAAATTACACGATGGCTTTTCA  850

seq1  ATGAATTTCCTCTTATTTCAGACTACACACTAATCAAGCTACTTTCCTGA  899
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  ATGAATTTCCTCTTATTTCAGACTACACACTAATCAAGCTATTTTCTTGA  900

seq1  AGAACTACTGCAAT-GAAAACCC-TTTTTTTTTTTTTTTTCAATACTGAC  947
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  AGAACTACTGCAATGGAAAACCCTTTTTTTTTTTTTTTTTCAATACTGAC  950

seq1  AAAGCTCATATATTTTTATGGGCTTTTATCAAAGTCATTAGCCCCTCAGT  997
      ||||||| |||| |||||||||||||||||||||||| ||||||||||||
seq2  AAAGCTCTTATA-TTTTATGGGCTTTTATCAAAGTCA-TAGCCCCTCAGT  998

seq1  TGTTCCAGCATTTTTGGCAAA  1018
      |||||||||| ||||||||||
seq2  TGTTCCAGCA-TTTTGGCAAA  1018

seq1: chr6_39205549_39206684
seq2: B6Ng01-067O21.g_67_1194 (reverse)

seq1  CATGAAGTGTGGACAAGTCCCCAGCCTCAGGGTTACTCTGAGAA-TTAAA  49
      ||||||   ||||| ||||| |||||||||||||||| || ||| |||||
seq2  CATGAAAGTTGGAC-AGTCCACAGCCTCAGGGTTACT-TGGGAATTTAAA  48

seq1  CACAGTAACATAGGGAGGCAGAGCACTTCAGCCTGGAAGGTTTTGTTATA  99
      |  ||| ||||| ||| |||| |||| |||| || | | |||||||||||
seq2  CCAAGT-ACATACGGAAGCAGGGCAC-TCAGGCTCGCAAGTTTTGTTATA  96

seq1  ATTTCCTAGACTCAAAGAAACTAGCACA-TCTGGAAAAAAAAAAAAGTGT  148
      ||||||||||||| ||||||||||| || |||||||||||||||||||||
seq2  ATTTCCTAGACTC-AAGAAACTAGCCCACTCTGGAAAAAAAAAAAAGTGT  145

seq1  TCAGAATTCACGTAATAAAGACAGAAAACAGGAAAATTTGCGATACTTTC  198
      |||||| ||||||||||||||||| ||||||| |||||||||||||||||
seq2  TCAGAA-TCACGTAATAAAGACAG-AAACAGG-AAATTTGCGATACTTTC  192

seq1  TGCCATATCTCAGTTTGCCTTTTTGACATGTACATCCCGGCCGAGGTGAA  248
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TGCCATATCTCAG-TTGCCTTTTTGACATGTACATCCC-GCCGAGGTGAA  240

seq1  CTTGAAGGGATGGTTGATCTATTTGGTCCTGGTGGCTGATCTCTAATAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGGATGGTTGATCTATTTGGTCCTGGTGGCTGATCTCTAATAAG  290

seq1  CCTGGTCACCACCACATCAAAGGAGCCACTGAGACAACAGACTAGTGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCACCACCACATCAAAGGAGCCACTGAGACAACAGACTAGTGAAG  340

seq1  TCAGGAGAATGCAAATCCTGCCCACACTTCAAAGGGAGCTCTTCTCTGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAATGCAAATCCTGCCCACACTTCAAAGGGAGCTCTTCTCTGAG  390

seq1  AAGTTGTTACAGGCCATTGTGTAAACTATACAGCCCAGGGAGCTACAGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTACAGGCCATTGTGTAAACTATACAGCCCAGGGAGCTACAGGC  440

seq1  ACACCAATCCAGCATTCAGAGACTCATGACATACACCCAGGACCTAAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATCCAGCATTCAGAGACTCATGACATACACCCAGGACCTAAAAT  490

seq1  ATCTCCCCAGAAAAGTTCTCATTCTACCACCTTCTTAATTTCTGCTTCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCAGAAAAGTTCTCATTCTACCACCTTCTTAATTTCTGCTTCAC  540

seq1  ACGACCAAACAGTGAACAAGTGCCTAGAATGGAGCAGGCTGTGGTGGCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCAAACAGTGAACAAGTGCCTAGAATGGAGCAGGCTGTGGTGGCAC  590

seq1  AGGCCTATAGTCTCAGCACCTGGAAGGCTGAGACAGGAGGATTACCACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTATAGTCTCAGCACCTGGAAGGCTGAGACAGGAGGATTACCACAA  640

seq1  ATTCGAGACCATCCTGGGCTCCACATCGAGTGCCAAGGCAACTGGGTACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAGACCATCCTGGGCTCCACATCGAGTGCCAAGGCAACTGGGTACC  690

seq1  TAGGAAGACTCTGCCTAACAAACAACCATCTAACACTGGGCAGGTGGGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACTCTGCCTAACAAACAACCATCTAACACTGGGCAGGTGGGAC  740

seq1  CGGCCTGAAACGCATCTCATGGGCAGCCCTCTGCTCCCTGGGCTTCAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGAAACGCATCTCATGGGCAGCCCTCTGCTCCCTGGGCTTCAACC  790

seq1  CTCCGTTTGCATATTTGGTGTTTGAAAGCCACTACCAGAAAGGAGCACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTTGCATATTTGGTGTTTGAAAGCCACTACCAGAAAGGAGCACTT  840

seq1  CTTCACATTTTGGCTGGCGGTGGAACGGTGGAGAAGACCGAGGGGTATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATTTTGGCTGGCGGTGGAACGGTGGAGAAGACCGAGGGGTATAG  890

seq1  AAGGCCGATCTGCTTTTTTCTGAGCAGGTGCTCCGGAGCCCAACCTTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCGATCTGCTTTTTTCTGAGCAGGTGCTCCGGAGCCCAACCTTTGA  940

seq1  ACTCCGTGCCGTTGGCGTTGGTGGTGGTATACCCGCAAATCAACAACAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGTGCCGTTGGCGTTGGTGGTGGTATACCCGCAAATCAACAACAGA  990

seq1  CCTTCTCCACCTGTTTAAGGTCCAGTGTTTAGAGAGAAGGAAACAGAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCACCTGTTTAAGGTCCAGTGTTTAGAGAGAAGGAAACAGAACT  1040

seq1  AGAGGTTTCCTGGAGCTCCCCTAATTACCCAGGAAGCAGCCACACAGTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTCCTGGAGCTCCCCTAATTACCCAGGAAGCAGCCACACAGTGG  1090

seq1  GCAGATCCCACTCGGCACAGAGTTCCCAGGAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCCACTCGGCACAGAGTTCCCAGGAGGAATTC  1128