BAC Information

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BAC

Clone NameB6Ng01-067P09
Chromosome6 (Build37)
Map Location 36,756,290 - 36,894,188
singlet/doubletdoublet
Overlap genePtn, Dgki
Upstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370, LOC100039514
Downstream geneEG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067P09.bB6Ng01-067P09.g
ACCDH886690DH886691
length1,1881,058
definitionDH886690|Mus musculus domesticus DNA, BAC clone: B6Ng01-067P09, 5' end.DH886691|Mus musculus domesticus DNA, BAC clone: B6Ng01-067P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,756,290 - 36,757,503)(36,893,108 - 36,894,188)
sequence
gaattctatattttctttttctatttgagatgggactttatctaaattca
gtatagtaaaattactaaatgcaaacatcactaggaaaaaataaacttta
ttgatcaaaatgtctcaggtatgaactattgattatgttatccctgccta
tccttaagccacagggaattatggtaaaggtgagctgcctgatcaaattt
tcaagtgttaccatagttgcaagccctcaatggtatttgttctcagctac
ccttttaaacatagataccttacattatcataaaaggcgtcttatagtta
ttgatctagaaagattgtaatagcaacatgcaaactgctatctacaagtc
tggcttatagtgccaagtaaaatatcacaacaaatggtatcttggacagg
tcataaacaccaagaatggaaagacttcccaaagaaaggccaagatccaa
attctcctcaagccaattgatggatagaaaaagcaggaccagttcccaaa
gaagtccatatccacatgttcctttcccatcactcccagggagaaggtgt
ggcttgtaccacaggacactaaagcacttccatttgttcatgaaactggc
atccagaggagaaaacacttcccacccagctcagctttcctttcaaagca
tgggtcagcaacagtatatggctctgccctgttggacaatccagtataaa
ctagccttctgagtaagtaaggagcactcactcagtgtggagctcccttg
ctgttccactgtcccgagtagtctcagttgggccttatcatcagtacaag
agtcaaggacgtttgactcgtcaccatgctggcatatttagaacacaagt
gtctggggaactgccatttgtaaccttacttctgactgtagcctgttgct
agcatcacagcatttcatatagctcatgcaagctcagagtgttccaggga
atcacacggaggaatgacagcatggacgccacgtggggttgctactgaaa
tgagaaatcagaatatctctaggagaaataaaacttaaacttaaaatgtt
gataaaacaaactatttgggggcttgtttattttcagtgacagtttttat
gaaatgcaaccgatcttgaattgcagaaaaaatacccattaaaaaaaaaa
ggtcgatctgcttcgacgtctgtttgtaggactaaata
gaattcatgataatgcaaccctttagggtctcctgatatacaaaggacat
tattttataatatgctgatatttggaggcccaaagcattcatatgaattt
gttcaatttcaaatagcttcagataaagccaaagctaagtatgaaaagtt
tgaaatgccaggagtaagtggaagtcttgttaatcgcatacactgttccc
ctctgattcagacttccaacagttctttgttttcttttagctttctatga
tatttcttcaaaaatttattaggaaacttaacttacataataaaaactaa
tggtagatgaaagacaacaagatcaaaataataatcaaactcagcagatg
cagtgaaatatatggaaatgtgcaaagaagttaaaattacttttatcaga
aaattttcaataattaagtagcagtaacttatcaacgtttaatttagaat
tttcaaatcatgttaacatctggccatttatgaggaaacttcaattcttg
attgtattcagctagaattactttttaaatttatttccaggttcattctg
tctttctgtgcatgatactgcagatattttatatttatctcacccttagt
atagggatgaagtctgatggaccctggctcagtcactaatgtttggtcca
cttcttgtttctattttctccttaatatcactatatcttttttttttttt
taacaaatgttgagaagtgtttttaatcagagagaagtaattgtgctaag
tctattattttttgcttggttagaaattgcagattccagccgggcagggt
ggcacacgcctttgatcccagcacttgggaggcagaggcaggcagattct
gagttcgaagccagcctggtctacaaagtgagttccaggacagccagggc
tatacagagaaactctgtctcgttaacccaaagaaaagaaagaaagaaag
aaaagaaaagaaaagaaaggccttccggtccgcagcacgaggtagctagg
cgcggaattcgatgacacctgcagctaccacagacccgcagcgatcttaa
gacctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36756290_36757503
seq2: B6Ng01-067P09.b_50_1237

seq1  GAATTCTATATTTTCTTTTTCTATTTGAGATGGGACTTTATCTAAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTTTCTTTTTCTATTTGAGATGGGACTTTATCTAAATTCA  50

seq1  GTATAGTAAAATTACTAAATGCAAACATCACTAGGAAAAAATAAACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTAAAATTACTAAATGCAAACATCACTAGGAAAAAATAAACTTTA  100

seq1  TTGATCAAAATGTCTCAGGTATGAACTATTGATTATGTTATCCCTGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAAAATGTCTCAGGTATGAACTATTGATTATGTTATCCCTGCCTA  150

seq1  TCCTTAAGCCACAGGGAATTATGGTAAAGGTGAGCTGCCTGATCAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGCCACAGGGAATTATGGTAAAGGTGAGCTGCCTGATCAAATTT  200

seq1  TCAAGTGTTACCATAGTTGCAAGCCCTCAATGGTATTTGTTCTCAGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTTACCATAGTTGCAAGCCCTCAATGGTATTTGTTCTCAGCTAC  250

seq1  CCTTTTAAACATAGATACCTTACATTATCATAAAAGGCGTCTTATAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAACATAGATACCTTACATTATCATAAAAGGCGTCTTATAGTTA  300

seq1  TTGATCTAGAAAGATTGTAATAGCAACATGCAAACTGCTATCTACAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTAGAAAGATTGTAATAGCAACATGCAAACTGCTATCTACAAGTC  350

seq1  TGGCTTATAGTGCCAAGTAAAATATCACAACAAATGGTATCTTGGACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATAGTGCCAAGTAAAATATCACAACAAATGGTATCTTGGACAGG  400

seq1  TCATAAACACCAAGAATGGAAAGACTTCCCAAAGAAAGGCCAAGATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACACCAAGAATGGAAAGACTTCCCAAAGAAAGGCCAAGATCCAA  450

seq1  ATTCTCCTCAAGCCAATTGATGGATAGAAAAAGCAGGACCAGTTCCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTCAAGCCAATTGATGGATAGAAAAAGCAGGACCAGTTCCCAAA  500

seq1  GAAGTCCATATCCACATGTTCCTTTCCCATCACTCCCAGGGAGAAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCATATCCACATGTTCCTTTCCCATCACTCCCAGGGAGAAGGTGT  550

seq1  GGCTTGTACCACAGGACACTAAAGCACTTCCATTTGTTCATGAAACTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTACCACAGGACACTAAAGCACTTCCATTTGTTCATGAAACTGGC  600

seq1  ATCCAGAGGAGAAAACACTTCCCACCCAGCTCAGCTTTCCTTTCAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGGAGAAAACACTTCCCACCCAGCTCAGCTTTCCTTTCAAAGCA  650

seq1  TGGGTCAGCAACAGTATATGGCTCTGCCCTGTTGGACAATCCAGTATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGCAACAGTATATGGCTCTGCCCTGTTGGACAATCCAGTATAAA  700

seq1  CTAGCCTTCTGAGTAAGTAAGGAGCACTCACTCAGTGTGGAGCTCCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTCTGAGTAAGTAAGGAGCACTCACTCAGTGTGGAGCTCCCTTG  750

seq1  CTGTTCCACTGTCCCGAGTAGTCTCAGTTGGGCCTTATCATCAGTACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCACTGTCCCGAGTAGTCTCAGTTGGGCCTTATCATCAGTACAAG  800

seq1  AGTCAAGGACGTTTGACTCGTCACCATGCTGGCATATTTAGAACACAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGACGTTTGACTCGTCACCATGCTGGCATATTTAGAACACAAGT  850

seq1  GTCTGGGGAACTGCCATTTGTAACCTTACTTCTGACTGTAGCCTGTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGAACTGCCATTTGTAACCTTACTTCTGACTGTAGCCTGTTGCT  900

seq1  AGCATCACAGCATTTCATATAGCTCAGGCAAGCTCAGAGTGTTCCAGGGA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCATCACAGCATTTCATATAGCTCATGCAAGCTCAGAGTGTTCCAGGGA  950

seq1  ATCACACGGAGGAATGACAGCATGGACGCCACGTGGGGTTGCTACTGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACGGAGGAATGACAGCATGGACGCCACGTGGGGTTGCTACTGAAA  1000

seq1  TGAGAAATCAGAAATATCTCTAGGAGAAAATAAAAACTTAAAACTTAAAA  1050
      ||||||||||| |||||||||||||||||   ||||||| ||||||||||
seq2  TGAGAAATCAG-AATATCTCTAGGAGAAA--TAAAACTT-AAACTTAAAA  1046

seq1  TGTTTGATAAAAACAAACTATTTGGGGGCCTTGTATTATTTTCAGTGACC  1100
      || ||||| ||||||||||||||||||| ||||| |||||||||||||| 
seq2  TG-TTGAT-AAAACAAACTATTTGGGGG-CTTGT-TTATTTTCAGTGAC-  1091

seq1  AGGTTTTTATGAAATTGCAAACCAGATCATTGAATTGCAAGAAAAAAAAT  1150
        |||||||||||| |||||  | |||| ||||||||| ||||||||   
seq2  -AGTTTTTATGAAA-TGCAA--CCGATC-TTGAATTGC-AGAAAAAA---  1132

seq1  TACCCAATTAAAAAAAAAAAAAAGTCCGATCTTGCTTCAGACTGCTGTTT  1200
      |||||| |     |||||||||||  ||||| |||||| |||  ||||||
seq2  TACCCATT-----AAAAAAAAAAGGTCGATC-TGCTTC-GACGTCTGTTT  1175

seq1  GTAAAGACTAAATA  1214
      || | |||||||||
seq2  GT-AGGACTAAATA  1188

seq1: chr6_36893108_36894188
seq2: B6Ng01-067P09.g_67_1124 (reverse)

seq1  CAGAGGTCTTAAGATCCGCTGGCGGGTCTTGTGGGTAGCTTGCAGGTGTC  50
      ||||||||||||||| |||| ||||||| ||| |||||| ||||||||||
seq2  CAGAGGTCTTAAGAT-CGCT-GCGGGTC-TGT-GGTAGC-TGCAGGTGTC  45

seq1  ATCTGACTCCGCGCCCTAGCTACCTCGGTGCTTGCGGGACCGGAAGGGCC  100
      |||  | |||||| |||||||||||| |||| ||| ||||||||| ||||
seq2  ATCGAATTCCGCG-CCTAGCTACCTC-GTGC-TGC-GGACCGGAA-GGCC  90

seq1  TTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTT  150
      |||         |||||||||   |||||||| | | ||||||||   ||
seq2  TTT--------CTTTTCTTTT--CTTTTCTTTCTTTCTTTCTTTT--CTT  128

seq1  TGGTTTTACGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACT  200
      ||| || ||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGGTTAACGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACT  178

seq1  CACTTTGTAGACCAGGCTGGCTTCGAACTCAGAAATCTGCCTGCCTCTGC  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACTTTGTAGACCAGGCTGGCTTCGAACTCAG-AATCTGCCTGCCTCTGC  227

seq1  CTCCCAAGTGCTGGGATCAAAGGCGTGTGCCACCCTGCCCGGCTGGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGGGATCAAAGGCGTGTGCCACCCTGCCCGGCTGGAATC  277

seq1  TGCAATTTCTAACCAAGCAAAAAATAATAGACTTAGCACAATTACTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTCTAACCAAGCAAAAAATAATAGACTTAGCACAATTACTTCTC  327

seq1  TCTGATTAAAAACACTTCTCAACATTTGTTAAAAAAAAAAAAAAGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTAAAAACACTTCTCAACATTTGTTAAAAAAAAAAAAAAGATATA  377

seq1  GTGATATTAAGGAGAAAATAGAAACAAGAAGTGGACCAAACATTAGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTAAGGAGAAAATAGAAACAAGAAGTGGACCAAACATTAGTGAC  427

seq1  TGAGCCAGGGTCCATCAGACTTCATCCCTATACTAAGGGTGAGATAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGGTCCATCAGACTTCATCCCTATACTAAGGGTGAGATAAATA  477

seq1  TAAAATATCTGCAGTATCATGCACAGAAAGACAGAATGAACCTGGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCTGCAGTATCATGCACAGAAAGACAGAATGAACCTGGAAATA  527

seq1  AATTTAAAAAGTAATTCTAGCTGAATACAATCAAGAATTGAAGTTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAAGTAATTCTAGCTGAATACAATCAAGAATTGAAGTTTCCTC  577

seq1  ATAAATGGCCAGATGTTAACATGATTTGAAAATTCTAAATTAAACGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGCCAGATGTTAACATGATTTGAAAATTCTAAATTAAACGTTGA  627

seq1  TAAGTTACTGCTACTTAATTATTGAAAATTTTCTGATAAAAGTAATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACTGCTACTTAATTATTGAAAATTTTCTGATAAAAGTAATTTTA  677

seq1  ACTTCTTTGCACATTTCCATATATTTCACTGCATCTGCTGAGTTTGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTGCACATTTCCATATATTTCACTGCATCTGCTGAGTTTGATTA  727

seq1  TTATTTTGATCTTGTTGTCTTTCATCTACCATTAGTTTTTATTATGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGATCTTGTTGTCTTTCATCTACCATTAGTTTTTATTATGTAAG  777

seq1  TTAAGTTTCCTAATAAATTTTTGAAGAAATATCATAGAAAGCTAAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCCTAATAAATTTTTGAAGAAATATCATAGAAAGCTAAAAGAA  827

seq1  AACAAAGAACTGTTGGAAGTCTGAATCAGAGGGGAACAGTGTATGCGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAACTGTTGGAAGTCTGAATCAGAGGGGAACAGTGTATGCGATT  877

seq1  AACAAGACTTCCACTTACTCCTGGCATTTCAAACTTTTCATACTTAGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACTTCCACTTACTCCTGGCATTTCAAACTTTTCATACTTAGCTT  927

seq1  TGGCTTTATCTGAAGCTATTTGAAATTGAACAAATTCATATGAATGCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTATCTGAAGCTATTTGAAATTGAACAAATTCATATGAATGCTTT  977

seq1  GGGCCTCCAAATATCAGCATATTATAAAATAATGTCCTTTGTATATCAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCAAATATCAGCATATTATAAAATAATGTCCTTTGTATATCAGG  1027

seq1  AGACCCTAAAGGGTTGCATTATCATGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  AGACCCTAAAGGGTTGCATTATCATGAATTC  1058