BAC Information

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BAC

Clone NameB6Ng01-068C18
Chromosome6 (Build37)2 (Build37)
Map Location 16,491,439 - 16,491,928124,777,083 - 124,778,012
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068C18.bB6Ng01-068C18.g
ACCDH886838DH886839
length657926
definitionDH886838|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C18, 5' end.DH886839|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,491,439 - 16,491,928)(124,777,083 - 124,778,012)
sequence
gaattcctagccaatggatggacctgcagggcatcatcctgagtgaggta
acactttctcaaaggaactcacacaatatgtattcactgataagtggata
ttagccccaaacctaggatacccaggatataagatataatttgctaaaca
catgaaactcacgaagaatgaagactgaagtgtggacactatgcccctcc
ttagatttgggaacaaaacacccatggaaggagttacatagacaaagttt
ggagctgatatgaaaggatggaccatgtaaagactgccatatccagggat
ccaccccataatcagcatccaaacgctgacaccattgcatacactatcaa
gattttattgaaaggacccagatgtagctgtctcttgtgagactatgcca
gggcctagcaaacccagaagtggatgctcacggtcagctaatggatggat
catagggctcccaatggaggagctagagaaagtagccaaggagctaaagg
gatctgcaaccctataggtggaacaacattatgaactaaccagtaccccg
gagctcttgactctagctgcatatatatcaaaagatggcctagtcggcca
tcactggaaagagaggcccattggacttgcaaactttatatgccccaata
cagggga
gaattcaaaccaagtgagccgagatcattttataaagaaatcctaatggg
atgctttgctttgtttttctgggcacttgtttcaaacagcacctcttcga
aatgtgtctgacaaacatagggttctggtgatcagatggggaaactgagg
cacaagatctgaggttttcccaagcttgtccatacaatgactaaatgcac
taaaataaagcctgagcgaccttgggttccacgcatatccaaaggggttc
cttcagcaccattctggcccctctggagggggcttgaatggtcactttcc
taacaaggccagtatttgtgaatccttgataggtatcagaaacagttggg
gacatgtctgtgactagggtcacagctagggcttttaatacagtggatga
acacatgcatcttcacagctcttccagtgaatgcaatgctcaaccgaggt
acagaatgcacatccaaacttctatttcacacaggatcatgcaaggatct
gtgaatcacaatctggatgcctgacacttgaatgaaccaatgggaacaca
tggggacggggaatgttacaaggagcaccctggaaccctgggaaggtaga
gctcagcaaagctaggtccttgcttctgggaaacattctgctctggaggt
atatcgccctgtccttgatgaaactctcctggcgtatggccacgcttgcc
taacagctggccccaggtaatgtgtgcccgtaattcacaccgaccctctc
atatttggaattctcatcacttgctcccttcctccatcaaaatttctctg
actccccgaggcctgcctcatacgctgtcttttcctgggtttcacaattt
ctccccctccaatccttctatttccggttctttctgggaatttggacctc
catggcttcttctttagatacttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16491439_16491928
seq2: B6Ng01-068C18.b_134_651 (reverse)

seq1  CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAG  50

seq1  CTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACC  100

seq1  TATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTC  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTC  150

seq1  CATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTC  200
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  CATTGGGAGCCCTATGATCCATCCATTAGCTGACCGTGAGCATCCACTTC  200

seq1  TGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCTGGG  250
      || ||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  TGGGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTACATCTGGG  250

seq1  TCCTTTCGATAAAATCTTGCTAGTATATGCAATGGTGTCAGTGTTTGGAT  300
      ||||||| ||||||||||| |||| |||||||||||||||| ||||||||
seq2  TCCTTTCAATAAAATCTTGATAGTGTATGCAATGGTGTCAGCGTTTGGAT  300

seq1  GCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATC  350
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTTTACATGGTCCATC  350

seq1  CTTTCATCTCAGCTCCAAACTTTGTCTTTGTAACTCCTTCCATGGGTGTT  400
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTCATATCAGCTCCAAACTTTGTCTATGTAACTCCTTCCATGGGTGTT  400

seq1  TTGTTCCCAATTCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATT  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCAAATCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATT  450

seq1  CTTCTTGAGTTTCATGTGTT----------------------------TC  472
      |||| |||||||||||||||                            ||
seq2  CTTCGTGAGTTTCATGTGTTTAGCAAATTATATCTTATATCCTGGGTATC  500

seq1  CTAGGTTTGGGGCTAATA  490
      ||||||||||||||||||
seq2  CTAGGTTTGGGGCTAATA  518

seq1: chr2_124777083_124778012
seq2: B6Ng01-068C18.g_67_992 (reverse)

seq1  TGTATAGTATCTAAGGAAGAAGCCATGGAGGTACAAAGTCCCAGAAAGAA  50
      |||| ||||||||| ||||||||||||||||| |||| ||||||||||||
seq2  TGTA-AGTATCTAAAGAAGAAGCCATGGAGGTCCAAATTCCCAGAAAGAA  49

seq1  CAGGAAATAGGAGGATTGGGAGGGGGAGAAATTGTGAAACCCATGGAAAA  100
      | |||||||| |||||| ||||||||||||||||||||||||| ||||||
seq2  CCGGAAATAGAAGGATT-GGAGGGGGAGAAATTGTGAAACCCA-GGAAAA  97

seq1  GACAGCGTATGAGGCAGGCCTCGGGGAGTTCAGAGAAATTCTGATGGAGG  150
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  GACAGCGTATGAGGCAGGCCTCGGGGAG-TCAGAGAAATTTTGATGGAGG  146

seq1  AAGGGAGCAAGCGAGGAGAGCTGCAAATATGAGAGGGTCGGTGTGAATGA  200
      ||||||||||| || ||||  | ||||||||||||||||||||||||| |
seq2  AAGGGAGCAAGTGATGAGAATTCCAAATATGAGAGGGTCGGTGTGAATTA  196

seq1  GGGGCACACATTACCTCGGACCAGCTGTTAGGCTAGCGCGGCCCTACGCC  250
       ||||||||||||||| || ||||||||||||| |||| |||| ||||||
seq2  CGGGCACACATTACCTGGGGCCAGCTGTTAGGCAAGCGTGGCCATACGCC  246

seq1  AGGAGAGTTTTATCAAGGACAGGGCGATAAACCTCCAGAGCAGAATGTTT  300
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  AGGAGAGTTTCATCAAGGACAGGGCGATATACCTCCAGAGCAGAATGTTT  296

seq1  CCCAGAAGCAAGGACCAAGCTTTGCTGAGCTCTACCTTCCCAGGGTTCCA  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCAAGGACCTAGCTTTGCTGAGCTCTACCTTCCCAGGGTTCCA  346

seq1  GGGTGCTCCTTGTAACACTCCCTGTCCCCATGTGTCCCCACTGGCTCATT  400
      ||||||||||||||||| |||| |||||||||||| |||| ||| |||||
seq2  GGGTGCTCCTTGTAACATTCCCCGTCCCCATGTGTTCCCATTGGTTCATT  396

seq1  CAAGTGTCAGGCATCCAGACTCTGCTTCACAGATCCTTGCATGATCCTGT  450
      ||||||||||||||||||| | || |||||||||||||||||||||||||
seq2  CAAGTGTCAGGCATCCAGATTGTGATTCACAGATCCTTGCATGATCCTGT  446

seq1  GTGAAATAGAAGTTTGGATGTGCATTCTGTACCTCGGTTGAGCATTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAGAAGTTTGGATGTGCATTCTGTACCTCGGTTGAGCATTGCAT  496

seq1  TCACTGGAAGAGCTGTGAAGATGCATGTCTTCATCCACTGTATTAAAAGC  550
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCACTGGAAGAGCTGTGAAGATGCATGTGTTCATCCACTGTATTAAAAGC  546

seq1  CCTAGCTGTGACCCTAGTCACAGACATGTCCCCAACTGTTTCTGATACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTGTGACCCTAGTCACAGACATGTCCCCAACTGTTTCTGATACCT  596

seq1  ATCAAGGATTCACAACTACTGGCCTTGTTAGGAAAGTGACCATTCAAGCC  650
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCAAGGATTCACAAATACTGGCCTTGTTAGGAAAGTGACCATTCAAGCC  646

seq1  CCCTCCAGAGGGGCCAGAATGGTGCTGAAGGAACCCCTTTGGATCTGCGT  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCTCCAGAGGGGCCAGAATGGTGCTGAAGGAACCCCTTTGGATATGCGT  696

seq1  GGAACCCAAGGTCGCTCAGGCTTTATTCTAGTGCATTTAGTCCTTCTCTG  750
      ||||||||||||||||||||||||||| |||||||||||||| || | ||
seq2  GGAACCCAAGGTCGCTCAGGCTTTATTTTAGTGCATTTAGTCATTGTATG  746

seq1  GACAAGCTTGGGAAAACCTCAGATCTTGTGCCTCAGTTTCCCCATCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTTGGGAAAACCTCAGATCTTGTGCCTCAGTTTCCCCATCTGAT  796

seq1  CACCAGAACCCTATGTTTGTCAGACACATTTCGAAGAGGTGCTGTTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAACCCTATGTTTGTCAGACACATTTCGAAGAGGTGCTGTTTGAA  846

seq1  ACAAGTGCCCAGAAAAACAAAGCAAAGCATCCCATTAGGATTTCTTTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGCCCAGAAAAACAAAGCAAAGCATCCCATTAGGATTTCTTTATA  896

seq1  AAATGATCTCGGCTCACTTGGTTTGAATTC  930
      ||||||||||||||||||||||||||||||
seq2  AAATGATCTCGGCTCACTTGGTTTGAATTC  926