BAC Information

Click to search

BAC

Clone NameB6Ng01-068K16
Chromosome1 (Build37)6 (Build37)
Map Location 187,098,102 - 187,098,53929,827,788 - 29,828,653
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068K16.bB6Ng01-068K16.g
ACCDH887187DH887188
length645864
definitionDH887187|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K16, 5' end.DH887188|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(187,098,102 - 187,098,539)(29,827,788 - 29,828,653)
sequence
gaattcagctcctagcgactacatttagcagttctaaactgcccttaaca
ccagctccacgggatttcaacaccttcttctggcctctgaggtcaccagc
acatcaatggcatacattcacacagatgcaggaaacagacacatttaaaa
aaaaaagaaagaaagaaaaagaaaaaaaaaaaagaaaagccaggcgtggt
ggcgcacgcctttaatcccagcactcgggaggcagaggcaggcagactga
gtttgaggccagcctggtctacaaagtgagttccaggacagccagggcta
tacagagaaaccctgtctcgaaaaaccaaaagaataaaataaaaaaataa
aataaaataggggctggagagatggctcagcggttaagagcactgactgc
ttttccagaggtcctgatttcaattcccagcaaccacatggtggctcaca
accatctgtaatgagatctgataccctcttctggcgtgttggaagacagc
tacagtgtactcatatgcatacaataaataaatcttttaaaaaataataa
agtaaaaataaaattcttaccaggtatagtggtgcatgctactggagagg
cagaggcagaagcagaggctgaggcataggctgaggagggatagg
gaattccaaattacacacttcctttctacatttggccttcagtttaaatt
ttcgcaaatttttcttacccttatatatgcaactaccatttccttccatg
ctttgccaagaatgaaacagtcccagtctacatcagggcttgtactccaa
attgacctcaaactttgaaagatgactttgaccatctggttctcttccct
ccacttagccagtgctggattctaggcctgtgccactatgcctggtttga
ttaggtgctgggaatctaatccagggcttcctgtatacaaggcaaacact
ctgcatccccagcattatgtaatcttttcacgttggaactgtcgtacttt
atgtatcggaaagagatccaaaactgtatgtctgtattttgatacaaaat
ttttttctctgaaattcgtaattactcttaactggggaaagtatagagtc
agcttactggagcctacttctctgccctgtgttgaaaatactgaagctgt
tctataaaatacaacttgaaatacttggcctagtttactcttgatgtgtt
gtatcaagatgtatagagacagaagcacagacaggagtggtgtgcatggc
tgtaattgcaatgctggagaagtgaaaggaggtggagcaagagtgcccag
ctacgtgagaccctgtctttaacagaagataaactaagtcttaagcaggt
gtgtgatgcagcttggttgtctccccactctttaacacaggtgcttatgg
agacactgggtgctctgggggcacagtgccgatgggctgcctgcatcatc
taactccaccctcaatgagtgctgctgctctctcagaaagtggtaagaat
tgggctctgttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187098102_187098539
seq2: B6Ng01-068K16.b_226_588

seq1  AAGAAAATGGTCATGCCAGGCGGTGGTGGCACACACCTTTAATCCCAGCA  50
      |||||||       ||||||| |||||||| ||| |||||||||||||||
seq2  AAGAAAA-------GCCAGGC-GTGGTGGCGCACGCCTTTAATCCCAGCA  42

seq1  CTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTAGTCT  100
      || ||||||||||||||||||||   ||||||| ||||||||||| ||||
seq2  CTCGGGAGGCAGAGGCAGGCAGA---CTGAGTTTGAGGCCAGCCTGGTCT  89

seq1  ACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCG  139

seq1  AAAAAGCAAAAAAAAGAAAAAGAAAAAAAATAGTCACTTTCTGTTTCCGT  200
      ||||| ||||| ||  ||| | ||||| || |                  
seq2  AAAAACCAAAAGAATAAAATAAAAAAATAAAA------------------  171

seq1  CTCTAGACTGATAGCTTTCTGGATTTAGAGACTTAAAAATTGGGCTGGAG  250
                                       |||||   |||||||||
seq2  ---------------------------------TAAAATAGGGGCTGGAG  188

seq1  AGATGGCTCAGTGGTTAAGAGTACTGACTGCTTTTCCAGAGGTCCTGAAT  300
      ||||||||||| ||||||||| |||||||||||||||||||||||||| |
seq2  AGATGGCTCAGCGGTTAAGAGCACTGACTGCTTTTCCAGAGGTCCTGATT  238

seq1  TCAATTCCCACCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCT  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCT  288

seq1  GACACCCTCTTCTGGTGTGTCTGAAGACAACTACAATGTACTCACATACA  400
      || |||||||||||| ||||  ||||||| ||||| |||||||| || ||
seq2  GATACCCTCTTCTGGCGTGTTGGAAGACAGCTACAGTGTACTCATATGCA  338

seq1  TAAAATAAATAAACAAAACTTTTTTGTTTTTTAAAAAA  438
      || ||||||||||             | ||||||||||
seq2  TACAATAAATAAA-------------TCTTTTAAAAAA  363

seq1: chr6_29827788_29828653
seq2: B6Ng01-068K16.g_71_934

seq1  GAATTCCAAATTACACACTTCCTTTCTACATTTGGCCTTCAGTTTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTACACACTTCCTTTCTACATTTGGCCTTCAGTTTAAATT  50

seq1  TTCGCAAATTTTTCTTACCCTTATATATGCAACTACCATTTCCTTCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAATTTTTCTTACCCTTATATATGCAACTACCATTTCCTTCCATG  100

seq1  CTTTGCCAAGAATGAAACAGTCCCAGTCTACATCAGGGCTTGTACTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCAAGAATGAAACAGTCCCAGTCTACATCAGGGCTTGTACTCCAA  150

seq1  ATTGACCTCAAACTTTGAAAGATGACTTTGACCATCTGGTTCTCTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTCAAACTTTGAAAGATGACTTTGACCATCTGGTTCTCTTCCCT  200

seq1  CCACTTAGCCAGTGCTGGATTCTAGGCCTGTGCCACTATGCCTGGTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAGCCAGTGCTGGATTCTAGGCCTGTGCCACTATGCCTGGTTTGA  250

seq1  TTAGGTGCTGGGAATCTAATCCAGGGCTTCCTGTATACAAGGCAAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGCTGGGAATCTAATCCAGGGCTTCCTGTATACAAGGCAAACACT  300

seq1  CTGCATCCCCAGCATTATGTAATCTTTTCACGTTGGAACTGTCGTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCCCAGCATTATGTAATCTTTTCACGTTGGAACTGTCGTACTTT  350

seq1  ATGTATCGGAAAGAGATCCAAAACTGTATGTCTGTATTTTGATACAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCGGAAAGAGATCCAAAACTGTATGTCTGTATTTTGATACAAAAT  400

seq1  TTTTTTCTCTGAAATTCGTAATTACTCTTAACTGGGGAAAGTATAGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTGAAATTCGTAATTACTCTTAACTGGGGAAAGTATAGAGTC  450

seq1  AGCTTACTGGAGCCTACTTCTCTGCCCTGTGTTGAAAATACTGAAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTGGAGCCTACTTCTCTGCCCTGTGTTGAAAATACTGAAGCTGT  500

seq1  TCTATAAAATACAACTTGAAATACTTGGCCTAGTTTACTCTTGATGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAATACAACTTGAAATACTTGGCCTAGTTTACTCTTGATGTGTT  550

seq1  GTATCAAGATGTATAGAGACAGAAGCACAGACAGGAGTGGTGTGCATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGATGTATAGAGACAGAAGCACAGACAGGAGTGGTGTGCATGGC  600

seq1  TGTAATTGCAATGCTGGAGAAGTGAAAGGAGGTGGAGCAAGAGTGCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTGCAATGCTGGAGAAGTGAAAGGAGGTGGAGCAAGAGTGCCCAG  650

seq1  CTACGTGAGACCCTGTCTTTAACAGAAGATAAACTAAGTCTTAAGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTGAGACCCTGTCTTTAACAGAAGATAAACTAAGTCTTAAGCAGGT  700

seq1  GTGTGATGCAGGCTTGGTTGTCTCCCCACTCTTTAACACAGGTGCTTATG  750
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGCA-GCTTGGTTGTCTCCCCACTCTTTAACACAGGTGCTTATG  749

seq1  GAGACACTGGGTGCTCTGGGGGCACAGTGCCGATGGGCTGCCTGCAACAT  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGACACTGGGTGCTCTGGGGGCACAGTGCCGATGGGCTGCCTGCATCAT  799

seq1  CT-ACTCCACCCTCAATGAAGTGGCTGCTGCTCTCGCAGAAAGTGGTAAG  849
      || ||||||||||||||| ||| |||||||||||| ||||||||||||||
seq2  CTAACTCCACCCTCAATG-AGT-GCTGCTGCTCTCTCAGAAAGTGGTAAG  847

seq1  AGTTGGGCTCTGTTCTG  866
      | |||||||||||||||
seq2  AATTGGGCTCTGTTCTG  864