BAC Information

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BAC

Clone NameB6Ng01-068O10
Chromosome6 (Build37)
Map Location 116,847,895 - 117,003,092
singlet/doubletdoublet
Overlap geneLOC100043439
Upstream geneIft122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
Downstream geneCxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068O10.bB6Ng01-068O10.g
ACCDH887359DH887360
length1,107865
definitionDH887359|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O10, 5' end.DH887360|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,847,895 - 116,848,999)(117,002,230 - 117,003,092)
sequence
gaattccaggtgcttctcattactatgacctgagaaaagcatcttaagga
aggaaagcttacttcacttcacagtttgaaaggaccgtccgtcccatctg
ggaaatcacaacgctaggcacttgaggcagttggtcatattggatccaca
gtcaggaagcagagaaaagtgaaggctggtgctcaacccgcagtctcctt
ttgattcagtgcaggatgtcagcccatggagtgtgctgcccatggctgct
ctggatgttgtcctcttctctccatttataacttacattttgttaatgtc
ttctgggtgattctgggtcccgtctagctcatcaatattaactattacat
ctcacgaggaggatggaaatcattcaccctcctaatatttctcaaccaca
gtctgacagatttgtatctagaatgcccaaagaaatccagaattcacaag
tctaaaaagtcaaagtagagaatggggggaaaaaaagctatatggatgcc
aagcgagaagatgagagcattgttgacattagtgagcactggggacgtgc
acagcaggttaatgcacagtaaaagctgcataagggtctccttatacagg
tgaaacatggtaaaattaaaaaaacaaaacaaaacaacaacaaaaccata
acactaaaagctggtgatggtgcagggaaccagatcattcacacgctggg
gtggggggcacagagtgacacagccacttggggaagagaattgagaattt
aataaaaataggaatgtgcttgatttatgacctagtgattacttttatgc
atatattcaaataactagaaacatagaaacctgcccacgaatatttcaga
agcatagttaataatagcttcaatcttaaaataaccctaaattttcttac
actgctaatgattaacaaactataatgtattccatactataggctcaagg
ggaggagagtggggtcactgttggacacaataaacttgaattgggcttaa
gtcaaagaagccattccaagatcacataccaaatgttaccttttgtagag
ggtttatgatgagaccacgtatgcagttggttggtactgggagacgtact
gactgga
gaattcctctaattgacaaaggtagaatattttttttggttatgaactct
ggtaaagttatgctttcctaagcagatcatcatgtagctcttaaaataaa
aaccaagaaagagaagagactagccatccgtgaccactgcaatttcacat
gactttgaagtcaatacaaatcaagagaattatcaatggaaagataagtt
tttgaaaatagcatccaaattttttatcttaatactatggaactaaacta
aagattatcgtaaatctgataataaatagtttaacgaagtggcacaaatt
gattaaaacaaaccctttctacatacaagcagtaattaggagatacagtg
ctgtggagatactatctgatatttgtcatataaggagggcctacattgct
agctgttagcctgattaaaaaaaatgtgcaccaccaagcaataaaaatca
aaagagatctagaagggaggtggagataaaggcctgattaccaagtattt
attagccttccagcaatggtattgttttctaggctatctccttaattttc
atgtgactttcatgaaagcattacagaaaactattgggaaaatggcactt
ataagtcatacatagctgtaacacagagaatagcagaagggaaggaagca
gtcagagggaccgcgtggggtgagttgggacagtgtccagtgtcctgagt
gtcctcctaggtgacctcagtgagagtgggttttggttccagcattggga
agatcaaggaaatgcagacagtgatggagtgtcagggctcagctggacag
cagaaaagaatgaagataggaggttattccttttagatgaaaagaagaga
aactgaggctagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116847895_116848999
seq2: B6Ng01-068O10.b_47_1149

seq1  GAATTCCAGGTGCTTCTCATTACTATGACCTGAGAAAAGCATCTTAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCTTCTCATTACTATGACCTGAGAAAAGCATCTTAAGGA  50

seq1  AGGAAAGCTTACTTCACTTCACAGTTTGAAAGGACCGTCCGTCCCATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTTACTTCACTTCACAGTTTGAAAGGACCGTCCGTCCCATCTG  100

seq1  GGAAATCACAACGCTAGGCACTTGAGGCAGTTGGTCATATTGGATCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCACAACGCTAGGCACTTGAGGCAGTTGGTCATATTGGATCCACA  150

seq1  GTCAGGAAGCAGAGAAAAGTGAAGGCTGGTGCTCAACCCGCAGTCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAGCAGAGAAAAGTGAAGGCTGGTGCTCAACCCGCAGTCTCCTT  200

seq1  TTGATTCAGTGCAGGATGTCAGCCCATGGAGTGTGCTGCCCATGGCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCAGTGCAGGATGTCAGCCCATGGAGTGTGCTGCCCATGGCTGCT  250

seq1  CTGGATGTTGTCCTCTTCTCTCCATTTATAACTTACATTTTGTTAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTTGTCCTCTTCTCTCCATTTATAACTTACATTTTGTTAATGTC  300

seq1  TTCTGGGTGATTCTGGGTCCCGTCTAGCTCATCAATATTAACTATTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTGATTCTGGGTCCCGTCTAGCTCATCAATATTAACTATTACAT  350

seq1  CTCACGAGGAGGATGGAAATCATTCACCCTCCTAATATTTCTCAACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGAGGAGGATGGAAATCATTCACCCTCCTAATATTTCTCAACCACA  400

seq1  GTCTGACAGATTTGTATCTAGAATGCCCAAAGAAATCCAGAATTCACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACAGATTTGTATCTAGAATGCCCAAAGAAATCCAGAATTCACAAG  450

seq1  TCTAAAAAGTCAAAGTAGAGAATGGGGGGAAAAAAAGCTATATGGATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGTCAAAGTAGAGAATGGGGGGAAAAAAAGCTATATGGATGCC  500

seq1  AAGCGAGAAGATGAGAGCATTGTTGACATTAGTGAGCACTGGGGACGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAGAAGATGAGAGCATTGTTGACATTAGTGAGCACTGGGGACGTGC  550

seq1  ACAGCAGGTTAATGCACAGTAAAAGCTGCATAAGGGTCTCCTTATACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGTTAATGCACAGTAAAAGCTGCATAAGGGTCTCCTTATACAGG  600

seq1  TGAAACATGGTAAAATTAAAAAAACAAAACAAAACAACAACAAAACCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATGGTAAAATTAAAAAAACAAAACAAAACAACAACAAAACCATA  650

seq1  ACACTAAAAGCTGGTGATGGTGCAGGGAACCAGATCATTCACACGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAAGCTGGTGATGGTGCAGGGAACCAGATCATTCACACGCTGGG  700

seq1  GTGGGGGGCACAGAGTGACACAGCCACTTGGGGAAGAGAATTGAGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGCACAGAGTGACACAGCCACTTGGGGAAGAGAATTGAGAATTT  750

seq1  AATAAAAATAGGAATGTGCTTGATTTATGACCTAGTGATTACTTTTATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATAGGAATGTGCTTGATTTATGACCTAGTGATTACTTTTATGC  800

seq1  ATATATTCAAATAACTAGAAACATAGAAACCTGCCCACGAATATTTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCAAATAACTAGAAACATAGAAACCTGCCCACGAATATTTCAGA  850

seq1  AGCATAGTTAATAATAGCTTCAATCTTAAAATAACCCT-AATTTTCTTAC  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGCATAGTTAATAATAGCTTCAATCTTAAAATAACCCTAAATTTTCTTAC  900

seq1  ACTGCTTAATGATTAACAAACTATAATGTATTCCATACTATAGGCTCAA-  948
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGC-TAATGATTAACAAACTATAATGTATTCCATACTATAGGCTCAAG  949

seq1  GAGAGGAGAGT-GGGTCACTGTTGGACACAATAAACTTGAATTGGGCTTA  997
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGAGTGGGGTCACTGTTGGACACAATAAACTTGAATTGGGCTTA  999

seq1  AGTCAAAGAAGCCATTCCAAGATCACATACCAAATGGTACCTTTTGTAGA  1047
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTCAAAGAAGCCATTCCAAGATCACATACCAAATGTTACCTTTTGTAGA  1049

seq1  GTGTTTTAATGATGAGAACCACGTATGCAGTTGGTTGGTACTGGGAGACC  1097
      | ||||  |||||||| ||||||||||||||||||||||||||||||| |
seq2  GGGTTT--ATGATGAG-ACCACGTATGCAGTTGGTTGGTACTGGGAGA-C  1095

seq1  GTACTGAC  1105
      ||||||||
seq2  GTACTGAC  1103

seq1: chr6_117002230_117003092
seq2: B6Ng01-068O10.g_70_934 (reverse)

seq1  AATCTAGCCTCAGTTTCTCCTC-TTTCATCT-AAAGGAATAACCTCCTAT  48
      ||||||||||||||||||| || |||||||| ||||||||||||||||||
seq2  AATCTAGCCTCAGTTTCTCTTCTTTTCATCTAAAAGGAATAACCTCCTAT  50

seq1  CTTCATTCTTTTCCTGCTGTCCAGCTGAGCCCTGACACTCCATCACTGTC  98
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTTTT-CTGCTGTCCAGCTGAGCCCTGACACTCCATCACTGTC  99

seq1  TGCATTTCCTTGATCTTCCCAATGCTGGAACCAAACCCTACTCTCACTGA  148
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  TGCATTTCCTTGATCTTCCCAATGCTGGAACCAAAACCCACTCTCACTGA  149

seq1  GGTCACCTAGGAGGACACTCAGGACACTGGACACTGTCCCAACTCACCCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCTAGGAGGACACTCAGGACACTGGACACTGTCCCAACTCACCCC  199

seq1  ACGCGGTCCCTCTGACTGCTTCCTTCCCTTCTGCTATTCTCTGTGTTACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGGTCCCTCTGACTGCTTCCTTCCCTTCTGCTATTCTCTGTGTTACA  249

seq1  GCTATGTATGACTTATAAGTGCCATTTTCCCAATAGTTTTCTGTAATGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTATGACTTATAAGTGCCATTTTCCCAATAGTTTTCTGTAATGCT  299

seq1  TTCATGAAAGTCACATGAAAATTAAGGAGATAGCCTAGAAAACAATACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAAGTCACATGAAAATTAAGGAGATAGCCTAGAAAACAATACCA  349

seq1  TTGCTGGAAGGCTAATAAATACTTGGTAATCAGGCCTTTATCTCCACCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAAGGCTAATAAATACTTGGTAATCAGGCCTTTATCTCCACCTC  399

seq1  CCTTCTAGATCTCTTTTGATTTTTATTGCTTGGTGGTGCACATTTTTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGATCTCTTTTGATTTTTATTGCTTGGTGGTGCACATTTTTTTT  449

seq1  AATCAGGCTAACAGCTAGCAATGTAGGCCCTCCTTATATGACAAATATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCTAACAGCTAGCAATGTAGGCCCTCCTTATATGACAAATATCA  499

seq1  GATAGTATCTCCACAGCACTGTATCTCCTAATTACTGCTTGTATGTAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATCTCCACAGCACTGTATCTCCTAATTACTGCTTGTATGTAGAA  549

seq1  AGGGTTTGTTTTAATCAATTTGTGCCACTTCGTTAAACTATTTATTATCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGTTTTAATCAATTTGTGCCACTTCGTTAAACTATTTATTATCA  599

seq1  GATTTACGATAATCTTTAGTTTAGTTCCATAGTATTAAGATAAAAAATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACGATAATCTTTAGTTTAGTTCCATAGTATTAAGATAAAAAATTT  649

seq1  GGATGCTATTTTCAAAAACTTATCTTTCCATTGATAATTCTCTTGATTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTATTTTCAAAAACTTATCTTTCCATTGATAATTCTCTTGATTTG  699

seq1  TATTGACTTCAAAGTCATGTGAAATTGCAGTGGTCACGGATGGCTAGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTCAAAGTCATGTGAAATTGCAGTGGTCACGGATGGCTAGTCT  749

seq1  CTTCTCTTTCTTGGTTTTTATTTTAAGAGCTACATGATGATCTGCTTAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTCTTGGTTTTTATTTTAAGAGCTACATGATGATCTGCTTAGG  799

seq1  AAAGCATAACTTTACCAGAGTTCATAACCAAAAAAAATATTCTACCTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAACTTTACCAGAGTTCATAACCAAAAAAAATATTCTACCTTTG  849

seq1  TC-CTTAGAGGAATTC  863
      ||  ||||||||||||
seq2  TCAATTAGAGGAATTC  865