BAC Information

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BAC

Clone NameB6Ng01-068O23
Chromosome6 (Build37)
Map Location 141,479,402 - 141,628,886
singlet/doubletdoublet
Overlap geneSlco1c1, Slco1b2
Upstream genePlekha5, Aebp2, EG664868, LOC664875, Pde3a
Downstream geneEG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068O23.bB6Ng01-068O23.g
ACCDH887385DH887386
length1,0991,052
definitionDH887385|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O23, 5' end.DH887386|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,479,402 - 141,480,513)(141,627,833 - 141,628,886)
sequence
gaattcaatctaggcaccggacgtttatcgtccacattccttccccatta
gccaaacggcacacaaagtggacctcttcctttttgcttcattttaaact
ttatttgggtgccagaggaatgctaaggtgctttgggaatctgtgatggt
gtcaacctctgctattcatgtcttggaagccttaattctaatgaatcaat
attcaagaggttggatttctcttccccttcctgcttgtgcccagtttaat
ctggcaagaccacaaagtcagcaaaattctgcctcgttatttattccaaa
ggcaacatggaaatttattctttgctataatgaggcccaaagtgaaaaga
ttgagaaagaatgctggctgtagggtctcgatggcaggattcgttaatca
aatatcctgtctgattttaattgaaaaatgttgccaaacttacggtagta
agagaagatagtgatgctttaaattatacctatagaactatagtcttctg
tgaaacggaaacgtctctaaatcatgcagatcagaaataaattgctgttt
ccttttaaaatcaactttgacaggctgggataagaaacattctcatgatg
gacacctcatccaaagaaaatgcccatttgttccacaaaaattcagcgca
acctgccggagggccatcctttacagtcggatatccgtccacagaggaag
cgcggccatgctgtggaaaactcaaggtagagggttgggtgtcgtttaca
gctcgaccttccttcctgacaaatgaagctacgtgaggaaattactttct
ttcttttcttttcttttttcttttttaaaataagctctcaatgcaaacta
ctaagaccactcatcaagcgatgaaattatttttgcttcctgtgcaggct
acgtggctctcctgggctcccttgaaagctcttcctagataagcagagga
gacagagaaccagacatttataaaagcactgccctgtcctgtagttgtac
taattatttccacactgttttcctttccgaaagcaacttggctgcttgta
ccagaaagagaacagtgtctgcgaacctcagctcctctctatacaaata
gaattcatttgatctttcttcatttagtgagctggtggcacccttacttc
tgtaaaaactctcatccataatgatgagaatgaaattacatggaaaagtg
gatgggtgggatattactcctgcttgaatacttttactgaaatactaaac
tgatgatatattttacattgccttaaactacttggtgcttatttgtttag
aaggctgagtagatatgtcattctgccaaggggaagaaaccacttcacct
ctcctgacaaaagagaacagttcttcacttcaagttttgtgaggatccaa
tatatatgtatttgcaccttgaacttcagttttcttgaaatgtgactgat
ccttaatccttgcaggaaagataccacctactgaggactttcaaccatgt
cctagaatgctggtggctccctctcaacctcagggattatggaggctaag
acaagcagatcacttgagtagtatagtgtatgacttacctgggcaacata
gtgaaaccgtgtctcaaaaaaaatcaatgaataaataaatgaataaagtt
atcaagagagcttatacaattaaacagagaacacattaaacacattacaa
taaagatttcaagcattgtggttatatgttaggagacagtagatgcagta
tggttggtgaagggtggtcttagatcagcaaggggtacactgtactcata
gcgcagaaagttatgcttatattctaggagacaggtatttttgttttcca
ttgtattttgttgattttgtaagtaagatgtaggaagtctgcaggaagta
taatttggcttggtgactgaagtctttctcaaaactcagatttatcaagg
gtgattcggagaaggaggaggtgggaattttatccctgcttgagtccttg
tatctcactgatgctgttgtttatagggaggtttgggctatgtactagaa
catacaggtaactcgttgtgtactcaagtgcattttccacctcaggagag
tgcttattggctatacatgggattgtaaggaggaactggttgacaggact
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141479402_141480513
seq2: B6Ng01-068O23.b_51_1149

seq1  GAATTCAATCTAGGCACCGGACGTTTATCGTCCACATTCCTTCCCCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTAGGCACCGGACGTTTATCGTCCACATTCCTTCCCCATTA  50

seq1  GCCAAACGGCACACAAAGTGGACCTCTTCCTTTTTGCTTCATTTTAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACGGCACACAAAGTGGACCTCTTCCTTTTTGCTTCATTTTAAACT  100

seq1  TTATTTGGGTGCCAGAGGAATGCTAAGGTGCTTTGGGAATCTGTGATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGGTGCCAGAGGAATGCTAAGGTGCTTTGGGAATCTGTGATGGT  150

seq1  GTCAACCTCTGCTATTCATGTCTTGGAAGCCTTAATTCTAATGAATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCTCTGCTATTCATGTCTTGGAAGCCTTAATTCTAATGAATCAAT  200

seq1  ATTCAAGAGGTTGGATTTCTCTTCCCCTTCCTGCTTGTGCCCAGTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGAGGTTGGATTTCTCTTCCCCTTCCTGCTTGTGCCCAGTTTAAT  250

seq1  CTGGCAAGACCACAAAGTCAGCAAAATTCTGCCTCGTTATTTATTCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGACCACAAAGTCAGCAAAATTCTGCCTCGTTATTTATTCCAAA  300

seq1  GGCAACATGGAAATTTATTCTTTGCTATAATGAGGCCCAAAGTGAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATGGAAATTTATTCTTTGCTATAATGAGGCCCAAAGTGAAAAGA  350

seq1  TTGAGAAAGAATGCTGGCTGTAGGGTCTCGATGGCAGGATTCGTTAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGAATGCTGGCTGTAGGGTCTCGATGGCAGGATTCGTTAATCA  400

seq1  AATATCCTGTCTGATTTTAATTGAAAAATGTTGCCAAACTTACGGTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTGTCTGATTTTAATTGAAAAATGTTGCCAAACTTACGGTAGTA  450

seq1  AGAGAAGATAGTGATGCTTTAAATTATACCTATAGAACTATAGTCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGATAGTGATGCTTTAAATTATACCTATAGAACTATAGTCTTCTG  500

seq1  TGAAACGGAAACGTCTCTAAATCATGCAGATCAGAAATAAATTGCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGGAAACGTCTCTAAATCATGCAGATCAGAAATAAATTGCTGTTT  550

seq1  CCTTTTAAAATCAACTTTGACAGGCTGGGATAAGAAACATTCTCATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAAATCAACTTTGACAGGCTGGGATAAGAAACATTCTCATGATG  600

seq1  GACACCTCATCCAAAGAAAATGCCCATTTGTTCCACAAAAATTCAGCGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTCATCCAAAGAAAATGCCCATTTGTTCCACAAAAATTCAGCGCA  650

seq1  ACCTGCCGGAGGGCCATCCTTTACAGTCGGATATCCGTCCACAGAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCGGAGGGCCATCCTTTACAGTCGGATATCCGTCCACAGAGGAAG  700

seq1  CGCGGCCATGCTGTGGAAAACTCAAGGTAGAGGGTTGGGTGTCGTTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCCATGCTGTGGAAAACTCAAGGTAGAGGGTTGGGTGTCGTTTACA  750

seq1  GCTCGACCTTCCTTCCTGACAAATGAAGCTACGTGAGGAAATTACTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGACCTTCCTTCCTGACAAATGAAGCTACGTGAGGAAATTACTTTCT  800

seq1  TTCTTTTCTTTTCTTTTTTCTTTTTTAAAAATAAGCTCTCAATGCAAACT  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTTTTCTTTTTT-AAAATAAGCTCTCAATGCAAACT  849

seq1  ACTAAGACCACTCATCAAGCGATGAAATTATTTTTGCCTCCTGTGCAGGC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTAAGACCACTCATCAAGCGATGAAATTATTTTTGCTTCCTGTGCAGGC  899

seq1  TACGTGGCTCTCCTGGGCTCCCTTGAAAGCTCTTCCTAGATAAGCAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGCTCTCCTGGGCTCCCTTGAAAGCTCTTCCTAGATAAGCAGAGG  949

seq1  AGACAGAGAACCAGACATTTATAAAAGCACTGCCCTGTCCTGTAGGTTGT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGACAGAGAACCAGACATTTATAAAAGCACTGCCCTGTCCTGTA-GTTGT  998

seq1  ACTAATTATTTCCACACTGTTTTCCTTTCCCGAAAGCAAACTTGGCTTGG  1050
      |||||||||||||||||||||||||||| |||||||| |||||||||  |
seq2  ACTAATTATTTCCACACTGTTTTCCTTT-CCGAAAGC-AACTTGGCT--G  1044

seq1  CTTGTTACACAGAAAGAGACAGGTGTCTGCGAAACTCAAGCCCCCCTTCT  1100
      |||| ||| ||||||||||   ||||||||||| ||| ||| ||   |||
seq2  CTTG-TAC-CAGAAAGAGAACAGTGTCTGCGAACCTC-AGCTCC---TCT  1088

seq1  CTATACCAAATA  1112
      ||||| ||||||
seq2  CTATA-CAAATA  1099

seq1: chr6_141627833_141628886
seq2: B6Ng01-068O23.g_67_1118 (reverse)

seq1  TTAGTCCTGTCAACAAG-TCCTCCTTACATTCCCATGTA-AGCCAATAAG  48
      |||||||||||||| || ||||||||||| ||||||||| ||||||||||
seq2  TTAGTCCTGTCAACCAGTTCCTCCTTACAATCCCATGTATAGCCAATAAG  50

seq1  CACTCTCCTGGGGGTGAAAATGCACATGGAGTACACAAACGAGTTACCTG  98
      |||||||||| ||  |||||||||| | |||||||| |||||||||||||
seq2  CACTCTCCTGAGGTGGAAAATGCAC-TTGAGTACAC-AACGAGTTACCTG  98

seq1  TAGTGTTTCTAGTACATAGCCCAAACCTCCCTATAAACAACAGCATCAGT  148
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TG-TTCTAGTACATAGCCCAAACCTCCCTATAAACAACAGCATCAGT  146

seq1  GAGATACAAGGACTCAAGCAGGGATAAAATTCCCACCTCCTCCTTCTCCG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAAGGACTCAAGCAGGGATAAAATTCCCACCTCCTCCTTCTCCG  196

seq1  AATCACCCTTGATAAATCTGAGTTTTGAGAAAGACTTCAGTCACCAAGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCCTTGATAAATCTGAGTTTTGAGAAAGACTTCAGTCACCAAGCC  246

seq1  AAATTATACTTCCTGCAGACTTCCTACATCTTACTTACAAAATCAACAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATACTTCCTGCAGACTTCCTACATCTTACTTACAAAATCAACAAA  296

seq1  ATACAATGGAAAACAAAAATACCTGTCTCCTAGAATATAAGCATAACTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGGAAAACAAAAATACCTGTCTCCTAGAATATAAGCATAACTTT  346

seq1  CTGCGCTATGAGTACAGTGTACCCCTTGCTGATCTAAGACCACCCTTCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCTATGAGTACAGTGTACCCCTTGCTGATCTAAGACCACCCTTCAC  396

seq1  CAACCATACTGCATCTACTGTCTCCTAACATATAACCACAATGCTTGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATACTGCATCTACTGTCTCCTAACATATAACCACAATGCTTGAAA  446

seq1  TCTTTATTGTAATGTGTTTAATGTGTTCTCTGTTTAATTGTATAAGCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTGTAATGTGTTTAATGTGTTCTCTGTTTAATTGTATAAGCTCT  496

seq1  CTTGATAACTTTATTCATTTATTTATTCATTGATTTTTTTTGAGACACGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAACTTTATTCATTTATTTATTCATTGATTTTTTTTGAGACACGG  546

seq1  TTTCACTATGTTGCCCAGGTAAGTCATACACTATACTACTCAAGTGATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATGTTGCCCAGGTAAGTCATACACTATACTACTCAAGTGATCT  596

seq1  GCTTGTCTTAGCCTCCATAATCCCTGAGGTTGAGAGGGAGCCACCAGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTAGCCTCCATAATCCCTGAGGTTGAGAGGGAGCCACCAGCAT  646

seq1  TCTAGGACATGGTTGAAAGTCCTCAGTAGGTGGTATCTTTCCTGCAAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACATGGTTGAAAGTCCTCAGTAGGTGGTATCTTTCCTGCAAGGA  696

seq1  TTAAGGATCAGTCACATTTCAAGAAAACTGAAGTTCAAGGTGCAAATACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATCAGTCACATTTCAAGAAAACTGAAGTTCAAGGTGCAAATACA  746

seq1  TATATATTGGATCCTCACAAAACTTGAAGTGAAGAACTGTTCTCTTTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGGATCCTCACAAAACTTGAAGTGAAGAACTGTTCTCTTTTGT  796

seq1  CAGGAGAGGTGAAGTGGTTTCTTCCCCTTGGCAGAATGACATATCTACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGTGAAGTGGTTTCTTCCCCTTGGCAGAATGACATATCTACTC  846

seq1  AGCCTTCTAAACAAATAAGCACCAAGTAGTTTAAGGCAATGTAAAATATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTAAACAAATAAGCACCAAGTAGTTTAAGGCAATGTAAAATATA  896

seq1  TCATCAGTTTAGTATTTCAGTAAAAGTATTCAAGCAGGAGTAATATCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTTTAGTATTTCAGTAAAAGTATTCAAGCAGGAGTAATATCCCA  946

seq1  CCCATCCACTTTTCCATGTAATTTCATTCTCATCATTATGGATGAGAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCACTTTTCCATGTAATTTCATTCTCATCATTATGGATGAGAGTT  996

seq1  TTTACAGAAGTAAGGGTGCCACCAGCTCACTAAATGAAGAAAGATCAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAGTAAGGGTGCCACCAGCTCACTAAATGAAGAAAGATCAAAT  1046

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1052