BAC Information

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BAC

Clone NameB6Ng01-068P11
Chromosome6 (Build37)
Map Location 49,049,003 - 49,171,671
singlet/doubletdoublet
Overlap geneIgf2bp3, LOC100040626
Upstream geneZfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011
Downstream geneTra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068P11.bB6Ng01-068P11.g
ACCDH887409DH887410
length1,1501,065
definitionDH887409|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P11, 5' end.DH887410|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,170,502 - 49,171,671)(49,049,003 - 49,050,072)
sequence
gaattctaagtatctttcaataaagaccaaagctgtgacatctctctgga
tttaaatccccaagacaaaacgtgacagtatggcaggaatccttccttgt
tctggcaggttttgattgactctgatgctgttattttgttcccgtcctct
ctatgaattaggttttagtggctgaactaggacgaaactgtctatggcaa
gagcatagagttagtctagctatggggaatttcaaatagtaatatgtttt
attcttgtttatatcaaatacctatctttagaagtcctcatgtattcaaa
atttatggaaaaaaatatcccccaagtctttgaaaaaggacaaaaaggat
aggaacaacttactttactgtgaaaaaatattaaaaagaaagaaaataag
aaacattaccttaatgaataatactagacctccaaaaatcaaaatactaa
atacaacttgtataaaacagttctggtattgatattaaattaaacctcta
tccaaacaaaatgttctctttaggaaggcaatagtacactttaactgttc
atcgggatatgcctgtaaacttagcactcaggaggctgaggcaggagaat
caccctttcaaagtcagcctgggctacaaaacaaaacaaaaacaaagatc
acactatcttagctggtaaaaacaaaacaaacactgctactaacatttat
attaactataacaatatatacttgctaatttaattaataatatagtcatt
ttaatgtaaacaatactagtaagggaagcatatgttttagaagcatgcta
ggttaattttgataaagatctcagattagttttttccccccaactatatc
taatggtaccatactctttatcaacttcagctaaaatattttaaaataaa
atcaaatcctcaaactttgcacctacagtgggttgggctcccccttaaag
ctgggaccaccagactggagaggctcagcatcaaatttaattgaactcag
atgaatgacttcagtgagtaatggacattgtagttagccaggtatttact
tacgttattttgcagcaagatagaaaaaaaacccactcttataatctaaa
aatggcttcttccatgtattgcaacatggagaattcatctgctcagcgtt

gaattctctgagataaatgccaatagcaaggtctttcttttggaactgaa
catcaatcagatccagagctttgcacagtaaagagctctaccactgagct
atctccctagcccagaacaggaaagaacaggaagaaagcaagcttcttat
cacaatatggtcacctcagtgtggcagagggtcaccttcaccactctcag
agtaaatgccgggaacccttagctcatcccaggacccacaacactccatt
cttcagtgaggtaataacaaaaggaacagacaagggaatgctgaggggtg
gggatgtagctcagttagcagaagcctgcttagcatgtgcatagccctga
gtccaatccccacccaacagaaaactaaacagtgtagtgcatacttgtga
tcctaacacttcagagaaagaagcttgagaccagaaattcaggatcattc
ttggctacacagtgagttcaaggccaacctggattatatgagaccttgtc
tgaaaaaagaacaaaacaaaacaaaactggtaaggctttggtaaatttaa
cagttgtccttaaaaattctagtttcagggttggagagatggctagcagt
tgcgagagcacttgctgcttctctagacagcctgagttcaattcccagaa
tttacatgttgtcttacaatcttttgaaacaactgctccaggggatccaa
aaccctcctctggccttctcatacatatgttacacagacatatgcaagcc
aattattttatatgcatataaaataatttaaaaaatgtatttcccaaagt
agtcccacttaccaagtacaaatagcttagtacagttacatatatactac
tttctgccttcaagtcctctagtggatgctgaaagccactgaggcttcaa
aaccctatacacactgtggttcttctataggctaccttctgagataacca
gagagaattcactagaacaataactaaacatgaaaaagctgtacagggag
gggactatggttcctctatgatataagcatggccatctaggggtaattca
actggggggactatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49170502_49171671
seq2: B6Ng01-068P11.b_50_1199 (reverse)

seq1  AACGCTGAGGCCAGATGAATTCCTCATGTTGTCAATACAT-GAAGAGCTC  49
      |||||||||  |||||||||||  ||||||| |||||||| |||||   |
seq2  AACGCTGAG--CAGATGAATTCTCCATGTTG-CAATACATGGAAGAAGCC  47

seq1  ATTTTTAGATTTAATAAAGGAGTTGGGTTTTTTTTTCTAATTCCTTGCTT  99
      |||||||||||  ||||  ||||  || |||||||||||    ||||| |
seq2  ATTTTTAGATT--ATAA--GAGT--GGGTTTTTTTTCTA---TCTTGC-T  87

seq1  GCAAAAATAACGGTAGGTAAATACCTGGCTAACTACCATGTCCATTTTAC  149
      || |||||||| ||| |||||||||||||||||||| |||||||  ||||
seq2  GC-AAAATAAC-GTAAGTAAATACCTGGCTAACTACAATGTCCA--TTAC  133

seq1  TCACTGAAGTTCATTCCTTCTTGAGTTCAATTAAATTTGATGCTGAGCCT  199
      ||||||||| |||||| |   |||||||||||||||||||||||||||||
seq2  TCACTGAAG-TCATTCAT--CTGAGTTCAATTAAATTTGATGCTGAGCCT  180

seq1  CTCCAGTCTGGTGGTCCCAGCTTTAAGGGGGAGCCCAACCCACTGTAGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCTGGTGGTCCCAGCTTTAAGGGGGAGCCCAACCCACTGTAGGT  230

seq1  GCAAAGTTTGAGGATTTGATTTTATTTTAAAATATTTTAGCTGAAGTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTTTGAGGATTTGATTTTATTTTAAAATATTTTAGCTGAAGTTGA  280

seq1  TAAAGAGTATGGTACCATTAGATATAGTTGGGGGGAAAAAACCTAATCTG  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAAGAGTATGGTACCATTAGATATAGTTGGGGGGAAAAAA-CTAATCTG  329

seq1  AGATCTTTATCAAAATTAACCTAGCATGCTTCTAAAACATATGCTTCCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTATCAAAATTAACCTAGCATGCTTCTAAAACATATGCTTCCCT  379

seq1  TACTAGTATTGTTTACATTAAAATGACTATATTATTAATTAAATTAGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTATTGTTTACATTAAAATGACTATATTATTAATTAAATTAGCAA  429

seq1  GTATATATTGTTATAGTTAATATAAATGTTAGTAGCAGTGTTTGTTTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATTGTTATAGTTAATATAAATGTTAGTAGCAGTGTTTGTTTTGT  479

seq1  TTTTACCAGCTAAGATAGTGTGATCTTTGTTTTTGTTTTGTTTTGTAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCAGCTAAGATAGTGTGATCTTTGTTTTTGTTTTGTTTTGTAGCC  529

seq1  CAGGCTGACTTTGAAAGGGTGATTCTCCTGCCTCAGCCTCCTGAGTGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGACTTTGAAAGGGTGATTCTCCTGCCTCAGCCTCCTGAGTGCTA  579

seq1  AGTTTACAGGCATATCCCGATGAACAGTTAAAGTGTACTATTGCCTTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACAGGCATATCCCGATGAACAGTTAAAGTGTACTATTGCCTTCCT  629

seq1  AAAGAGAACATTTTGTTTGGATAGAGGTTTAATTTAATATCAATACCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACATTTTGTTTGGATAGAGGTTTAATTTAATATCAATACCAGA  679

seq1  ACTGTTTTATACAAGTTGTATTTAGTATTTTGATTTTTGGAGGTCTAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTATACAAGTTGTATTTAGTATTTTGATTTTTGGAGGTCTAGTA  729

seq1  TTATTCATTAAGGTAATGTTTCTTATTTTCTTTCTTTTTAATATTTTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTAAGGTAATGTTTCTTATTTTCTTTCTTTTTAATATTTTTTC  779

seq1  ACAGTAAAGTAAGTTGTTCCTATCCTTTTTGTCCTTTTTCAAAGACTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAGTAAGTTGTTCCTATCCTTTTTGTCCTTTTTCAAAGACTTGG  829

seq1  GGGATATTTTTTTCCATAAATTTTGAATACATGAGGACTTCTAAAGATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTTTTTTCCATAAATTTTGAATACATGAGGACTTCTAAAGATAG  879

seq1  GTATTTGATATAAACAAGAATAAAACATATTACTATTTGAAATTCCCCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGATATAAACAAGAATAAAACATATTACTATTTGAAATTCCCCAT  929

seq1  AGCTAGACTAACTCTATGCTCTTGCCATAGACAGTTTCGTCCTAGTTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACTAACTCTATGCTCTTGCCATAGACAGTTTCGTCCTAGTTCAG  979

seq1  CCACTAAAACCTAATTCATAGAGAGGACGGGAACAAAATAACAGCATCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAAACCTAATTCATAGAGAGGACGGGAACAAAATAACAGCATCAG  1029

seq1  AGTCAATCAAAACCTGCCAGAACAAGGAAGGATTCCTGCCATACTGTCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATCAAAACCTGCCAGAACAAGGAAGGATTCCTGCCATACTGTCAC  1079

seq1  GTTTTGTCTTGGGGATTTAAATCCAGAGAGATGTCACAGCTTTGGTCTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCTTGGGGATTTAAATCCAGAGAGATGTCACAGCTTTGGTCTTT  1129

seq1  ATTGAAAGATACTTAGAATTC  1170
      |||||||||||||||||||||
seq2  ATTGAAAGATACTTAGAATTC  1150

seq1: chr6_49049003_49050072
seq2: B6Ng01-068P11.g_69_1133

seq1  GAATTCTCTGAGATAAATGCCAATAGCAAGGTCTTTCTTTTGGAACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGATAAATGCCAATAGCAAGGTCTTTCTTTTGGAACTGAA  50

seq1  CATCAATCAGATCCAGAGCTTTGCACAGTAAAGAGCTCTACCACTGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCAGATCCAGAGCTTTGCACAGTAAAGAGCTCTACCACTGAGCT  100

seq1  ATCTCCCTAGCCCAGAACAGGAAAGAACAGGAAGAAAGCAAGCTTCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTAGCCCAGAACAGGAAAGAACAGGAAGAAAGCAAGCTTCTTAT  150

seq1  CACAATATGGTCACCTCAGTGTGGCAGAGGGTCACCTTCACCACTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATGGTCACCTCAGTGTGGCAGAGGGTCACCTTCACCACTCTCAG  200

seq1  AGTAAATGCCGGGAACCCTTAGCTCATCCCAGGACCCACAACACTCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGCCGGGAACCCTTAGCTCATCCCAGGACCCACAACACTCCATT  250

seq1  CTTCAGTGAGGTAATAACAAAAGGAACAGACAAGGGAATGCTGAGGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGAGGTAATAACAAAAGGAACAGACAAGGGAATGCTGAGGGGTG  300

seq1  GGGATGTAGCTCAGTTAGCAGAAGCCTGCTTAGCATGTGCATAGCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAGCTCAGTTAGCAGAAGCCTGCTTAGCATGTGCATAGCCCTGA  350

seq1  GTCCAATCCCCACCCAACAGAAAACTAAACAGTGTAGTGCATACTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATCCCCACCCAACAGAAAACTAAACAGTGTAGTGCATACTTGTGA  400

seq1  TCCTAACACTTCAGAGAAAGAAGCTTGAGACCAGAAATTCAGGATCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACACTTCAGAGAAAGAAGCTTGAGACCAGAAATTCAGGATCATTC  450

seq1  TTGGCTACACAGTGAGTTCAAGGCCAACCTGGATTATATGAGACCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACACAGTGAGTTCAAGGCCAACCTGGATTATATGAGACCTTGTC  500

seq1  TGAAAAAAGAACAAAACAAAACAAAACTGGTAAGGCTTTGGTAAATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAGAACAAAACAAAACAAAACTGGTAAGGCTTTGGTAAATTTAA  550

seq1  CAGTTGTCCTTAAAAATTCTAGTTTCAGGGTTGGAGAGATGGCTAGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCCTTAAAAATTCTAGTTTCAGGGTTGGAGAGATGGCTAGCAGT  600

seq1  TGCGAGAGCACTTGCTGCTTCTCTAGACAGCCTGAGTTCAATTCCCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGAGCACTTGCTGCTTCTCTAGACAGCCTGAGTTCAATTCCCAGAA  650

seq1  TTTACATGTTGTCTTACAATCTTTTGAAACAACTGCTCCAGGGGATCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTTGTCTTACAATCTTTTGAAACAACTGCTCCAGGGGATCCAA  700

seq1  AACCCTCCTCTGGCCTTCTCATACATATGTTACACAGACATATGCAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCTCTGGCCTTCTCATACATATGTTACACAGACATATGCAAGCC  750

seq1  AATTATTTTATATGCATATAAAATAATTTAAAAAATGTATTTCCCAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATATGCATATAAAATAATTTAAAAAATGTATTTCCCAAAGT  800

seq1  AGTCCCACTTACCAAGTACAAATAGCTAAGTACAGTTACATATATACTAC  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTCCCACTTACCAAGTACAAATAGCTTAGTACAGTTACATATATACTAC  850

seq1  TTCCTGCCTTCAAGTCCTCTAGTGGATGCTGAAGGCCACTGAGGCTTCAA  900
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCTGCCTTCAAGTCCTCTAGTGGATGCTGAAAGCCACTGAGGCTTCAA  900

seq1  AACCCTATACACACTGTGGTTTCTCTATA-GCTA-CTTCTGAGATACACC  948
      |||||||||||||||||||||  |||||| |||| ||||||||||| |||
seq2  AACCCTATACACACTGTGGTTCTTCTATAGGCTACCTTCTGAGATA-ACC  949

seq1  AGAGAGAAATGCACTAGAACAATAACAAAACAGAAAAAAAGCTGTACAAG  998
      |||||| ||| ||||||||||||||| |||||   |||||||||||| ||
seq2  AGAGAG-AATTCACTAGAACAATAACTAAACA-TGAAAAAGCTGTAC-AG  996

seq1  GGAGTGTACTATGTCTCCTCAATGAATATTAGCAATGGTCAACTATGGGT  1048
      |||| | ||||||  ||||| ||| |||| ||| |||| || ||| ||| 
seq2  GGAGGGGACTATGGTTCCTCTATG-ATATAAGC-ATGGCCATCTA-GGGG  1043

seq1  TAATTCAAACTGGGGGACTATC  1070
      ||||||||   |||||||||||
seq2  TAATTCAACTGGGGGGACTATC  1065