BAC Information

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BAC

Clone NameB6Ng01-069D01
Chromosome6 (Build37)
Map Location 50,758,188 - 50,893,050
singlet/doubletdoublet
Overlap genenone
Upstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069D01.bB6Ng01-069D01.g
ACCDH887570DH887571
length1,083904
definitionDH887570|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D01, 5' end.DH887571|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,758,188 - 50,759,281)(50,892,148 - 50,893,050)
sequence
gaattcctttgagtgttcttaggacacttaggtaggtctaacaagtctct
tccccaaaagatacatgtgttggtgaaaacagctcagtttttgaagaaaa
gggaacctacctgcagttctcaaaatgaccagacggtggcagtacaccat
cagtgatgccataactttttttgaggtttaaagtttgagaaaactgaatg
ctgaataggtttttatggggacacagaattttcggtgctagagctcatta
agcaatgcagataaaaatggatagcctacaaaaatttaatttctgttttc
aacagtatttagttcattgttcaaagttggtgatgctatagctatctatc
catctttagggtgagcgttgccttaaagctgatggagcaccgcctagaaa
acaaaacaaaaccctcagtgcagggcttaggaaagaatgtcctacaagga
gagggatgctaaccttggtttaaatataaattaaaccctcatcatctttt
acagttaagtgaaacttctcgagacagcggtgaaaggtctcccttcagat
atccaaccagacttcacctgaggggtttttctctctggctttaactttgt
atgccccccccaccccccaagcctttgaagtggttattttaatatttgtt
gtgctagtgaaagggcctggttttagtctctgttcgcattgcatttccag
gccaaacatttgatgtttttgcatcgctcccttccggggaccacgactcc
actttgttttatgaccagagctgaagccagcacccatgaccccggagaag
gggactgagttatttatcccctcggacgtttcattaaagcacggttcatc
tccgcaaacagtgtttcctaaacatgctctctgattacacagaatgtttt
gcctgtccagctaagccatatttttttagggacatttttaaacacgcatg
tcaggaactcgagcacccggtggggcggggcagcccggtgttgcagcatt
agaatggagtgcttctaattaatacacagccgggtcctacagcgtggaag
tcggtccatattgtggagttaagagcatgattc
gaattctagagctctgagcaggtcttgcacattttgtctcccaagccttc
tgtttctgtcttcctgtctacttacgtcaaattgtcttaatatttaaggg
ctttcaggaaattcagctttaaaaaggcagcaaagcagctttgagttggc
aaacaccctgcatttcagaggtgacactaaccaaagaaacacactattat
ttttgcaatttccaattgtccctggaagcactttgctgcggagaccagtg
ccagctattaagtagaggagctcattttggtgccagaattagctgaaatt
aagatcctttgacatcttcgtacagaaaaaagtcagattcggtacagaca
attcagaatttaatagattgtgacaggttataaaattctatgcatttgaa
agaaaagctttgtcggtggaataatgtgtttctaatttacacataatagg
tccatggagctgtgactagaaggacattaaagtaatgaggaaattccagt
tatggacaccttgagcagcgatcaccaagattatgattaggccagtcatt
cccctgaatacctcacagagctaaagccgaaaagaagggacccgggacaa
agaaaagatcaggagagcaatcggcttcaggatggggagagaggagagcg
gttgagagaattctgcttcctcttggggaaaggggatgttttgaaactga
agtgctgtgtggaccggatccgcctctctaagccatgcagcagaggagaa
accattgccagttatgtcaacggcaggagcagcaatgttatttttgtgac
taaagctcttccccaataaaaagggggggggggcattttactttctctcc
attcttttatcccaccaagcccctcttggcaaccaccaagattacaatac
caaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50758188_50759281
seq2: B6Ng01-069D01.b_44_1126

seq1  GAATTCCTTTGAGTGTTCTTAGGACACTTAGGTAGGTCTAACAAGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGAGTGTTCTTAGGACACTTAGGTAGGTCTAACAAGTCTCT  50

seq1  TCCCCAAAAGATACATGTGTTGGTGAAAACAGCTCAGTTTTTGAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAAGATACATGTGTTGGTGAAAACAGCTCAGTTTTTGAAGAAAA  100

seq1  GGGAACCTACCTGCAGTTCTCAAAATGACCAGACGGTGGCAGTACACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTACCTGCAGTTCTCAAAATGACCAGACGGTGGCAGTACACCAT  150

seq1  CAGTGATGCCATAACTTTTTTTGAGGTTTAAAGTTTGAGAAAACTGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGCCATAACTTTTTTTGAGGTTTAAAGTTTGAGAAAACTGAATG  200

seq1  CTGAATAGGTTTTTATGGGGACACAGAATTTTCGGTGCTAGAGCTCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGGTTTTTATGGGGACACAGAATTTTCGGTGCTAGAGCTCATTA  250

seq1  AGCAATGCAGATAAAAATGGATAGCCTACAAAAATTTAATTTCTGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCAGATAAAAATGGATAGCCTACAAAAATTTAATTTCTGTTTTC  300

seq1  AACAGTATTTAGTTCATTGTTCAAAGTTGGTGATGCTATAGCTATCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTTAGTTCATTGTTCAAAGTTGGTGATGCTATAGCTATCTATC  350

seq1  CATCTTTAGGGTGAGCGTTGCCTTAAAGCTGATGGAGCACCGCCTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAGGGTGAGCGTTGCCTTAAAGCTGATGGAGCACCGCCTAGAAA  400

seq1  ACAAAACAAAACCCTCAGTGCAGGGCTTAGGAAAGAATGTCCTACAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACCCTCAGTGCAGGGCTTAGGAAAGAATGTCCTACAAGGA  450

seq1  GAGGGATGCTAACCTTGGTTTAAATATAAATTAAACCCTCATCATCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGCTAACCTTGGTTTAAATATAAATTAAACCCTCATCATCTTTT  500

seq1  ACAGTTAAGTGAAACTTCTCGAGACAGCGGTGAAAGGTCTCCCTTCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAAGTGAAACTTCTCGAGACAGCGGTGAAAGGTCTCCCTTCAGAT  550

seq1  ATCCAACCAGACTTCACCTGAGGGGTTTTTCTCTCTGGCTTTAACTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACCAGACTTCACCTGAGGGGTTTTTCTCTCTGGCTTTAACTTTGT  600

seq1  ATGCCCCCCCCACCCCCCAAGCCTTTGAAGTGGTTATTTTAATATTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCCCCCACCCCCCAAGCCTTTGAAGTGGTTATTTTAATATTTGTT  650

seq1  GTGCTAGTGAAAGGGCCTGGTTTTAGTCTCTGTTCGCATTGCATTTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGTGAAAGGGCCTGGTTTTAGTCTCTGTTCGCATTGCATTTCCAG  700

seq1  GCCAAACATTTGATGTTTTTGCATCGCTCCCTTCCGGGGACCACGACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACATTTGATGTTTTTGCATCGCTCCCTTCCGGGGACCACGACTCC  750

seq1  ACTTTGTTTTATGACCAGAGCTGAAGCCAGCACCCATGACCCCGGAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTTATGACCAGAGCTGAAGCCAGCACCCATGACCCCGGAGAAG  800

seq1  GGGACTGAGTTATTTATCCCCTCGGACGTTTCATTAAAGCACGGTTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGAGTTATTTATCCCCTCGGACGTTTCATTAAAGCACGGTTCATC  850

seq1  TCCGCAAACAGTGTTTCCTAAACATGCTCTCTGATTACACAGAATGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAAACAGTGTTTCCTAAACATGCTCTCTGATTACACAGAATGTTTT  900

seq1  GCCTGTCCAGCTAAGCCATATTTTTTTAAGGGACATTTTTAAACACGCAT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCCTGTCCAGCTAAGCCATATTTTTTT-AGGGACATTTTTAAACACGCAT  949

seq1  GTTCAGGAACTCGAGCACCCGGTGGGGCGGGGGCAGCCCGGTG-TGCAGC  999
      | |||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  G-TCAGGAACTCGAGCACCCGGTGGGGC-GGGGCAGCCCGGTGTTGCAGC  997

seq1  ATTTAGAAGTGGAGTTGCTTCCTAATAAATACACAGCGGGGTCCTACAGG  1049
      | |||||| ||||| ||||| ||||| |||||||||| |||||||||| |
seq2  A-TTAGAA-TGGAG-TGCTT-CTAATTAATACACAGCCGGGTCCTACA-G  1042

seq1  CGTGGGAGGTCCGTTCATATTTGTGGGAGTTAAGAGCATGGATTC  1094
      ||| ||| ||| || |||| |||| |||||||||||||| |||||
seq2  CGT-GGAAGTCGGTCCATA-TTGT-GGAGTTAAGAGCAT-GATTC  1083

seq1: chr6_50892148_50893050
seq2: B6Ng01-069D01.g_69_972 (reverse)

seq1  TTTGGTATTGTATTCTTTGTGGTTGACAAGAGGGGCTTGGTGGGATAAAA  50
      |||||||||||| |||| ||||||| ||||||||||||||||||||||||
seq2  TTTGGTATTGTAATCTTGGTGGTTGCCAAGAGGGGCTTGGTGGGATAAAA  50

seq1  GAATGGAGAGAAAGTAAAATG-CCCCCCCCCCTTTTTATTGGGGAAGAGC  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAATGGAGAGAAAGTAAAATGCCCCCCCCCCCTTTTTATTGGGGAAGAGC  100

seq1  TTTAGTCACAAAAATAACATTGCTGCTCCTGCCGTTGACATAACTGGCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCACAAAAATAACATTGCTGCTCCTGCCGTTGACATAACTGGCAA  150

seq1  TGGTTTCTCCTCTGCTGCATGGCTTAGAGAGGCGGATCCGGTCCACACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTCCTCTGCTGCATGGCTTAGAGAGGCGGATCCGGTCCACACAG  200

seq1  CACTTCAGTTTCAAAACATCCCCTTTCCCCAAGAGGAAGCAGAATTCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGTTTCAAAACATCCCCTTTCCCCAAGAGGAAGCAGAATTCTCT  250

seq1  CAACCGCTCTCCTCTCTCCCCATCCTGAAGCCGATTGCTCTCCTGATCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGCTCTCCTCTCTCCCCATCCTGAAGCCGATTGCTCTCCTGATCTT  300

seq1  TTCTTTGTCCCGGGTCCCTTCTTTTCGGCTTTAGCTCTGTGAGGTATTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTCCCGGGTCCCTTCTTTTCGGCTTTAGCTCTGTGAGGTATTCA  350

seq1  GGGGAATGACTGGCCTAATCATAATCTTGGTGATCGCTGCTCAAGGTGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGACTGGCCTAATCATAATCTTGGTGATCGCTGCTCAAGGTGTC  400

seq1  CATAACTGGAATTTCCTCATTACTTTAATGTCCTTCTAGTCACAGCTCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGGAATTTCCTCATTACTTTAATGTCCTTCTAGTCACAGCTCCA  450

seq1  TGGACCTATTATGTGTAAATTAGAAACACATTATTCCACCGACAAAGCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTATTATGTGTAAATTAGAAACACATTATTCCACCGACAAAGCTT  500

seq1  TTCTTTCAAATGCATAGAATTTTATAACCTGTCACAATCTATTAAATTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAAATGCATAGAATTTTATAACCTGTCACAATCTATTAAATTCT  550

seq1  GAATTGTCTGTACCGAATCTGACTTTTTTCTGTACGAAGATGTCAAAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTCTGTACCGAATCTGACTTTTTTCTGTACGAAGATGTCAAAGGA  600

seq1  TCTTAATTTCAGCTAATTCTGGCACCAAAATGAGCTCCTCTACTTAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTCAGCTAATTCTGGCACCAAAATGAGCTCCTCTACTTAATAG  650

seq1  CTGGCACTGGTCTCCGCAGCAAAGTGCTTCCAGGGACAATTGGAAATTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTGGTCTCCGCAGCAAAGTGCTTCCAGGGACAATTGGAAATTGC  700

seq1  AAAAATAATAGTGTGTTTCTTTGGTTAGTGTCACCTCTGAAATGCAGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATAGTGTGTTTCTTTGGTTAGTGTCACCTCTGAAATGCAGGGT  750

seq1  GTTTGCCAACTCAAAGCTGCTTTGCTGCCTTTTTAAAGCTGAATTTCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCAACTCAAAGCTGCTTTGCTGCCTTTTTAAAGCTGAATTTCCTG  800

seq1  AAAGCCCTTAAATATTAAGACAATTTGACGTAAGTAGACAGGAAGACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTTAAATATTAAGACAATTTGACGTAAGTAGACAGGAAGACAGA  850

seq1  AACAGAAGGCTTGGGAGACAAAATGTGCAAGACCTGCTCAGAGCTCTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGGCTTGGGAGACAAAATGTGCAAGACCTGCTCAGAGCTCTAGA  900

seq1  ATTC  903
      ||||
seq2  ATTC  904