BAC Information

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BAC

Clone NameB6Ng01-069D07
ChromosomeX (Build37)6 (Build37)
Map Location 13,088,573 - 13,089,708107,864,347 - 107,864,531
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAtp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2, LOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416
Downstream geneCask, Gpr34, Gpr82, LOC385327, EG385328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069D07.bB6Ng01-069D07.g
ACCDH887582DH887583
length1,1321,043
definitionDH887582|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D07, 5' end.DH887583|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,088,573 - 13,089,708)(107,864,347 - 107,864,531)
sequence
gaattcaaaggagttgggtcctggctggaggaagtggcctgctctggggg
tgaggcttgggggttatatactgccccccccctgctttctgattgccaaa
gttgtatggctagctgtcttaaactcttgccacacctttcttcccttaca
ctgcctcttgccgtgtatatggtcaaagcaatgagaaaaagaactaatat
ggtactaaacacttcaagagcaaacatcatctcttctgctttcaccccaa
acctttttctcctgtcttcccctttacaaacaaatacccacccctctttg
caatgaagacaagtaattgagaagatctgaaggtggaagtgccatcaagg
gtgactaaactgttgggataagaagctacaacctatattcacaatggatg
cctagcaacatagggctatagaaatttgctacaagtgtgcatgcaacttt
tttgttttgttttgttttgttttgttttttccccgagacaaggtttctct
gtatagccctggctgtcctggaactcagtctgtacaccaggctggcctcg
aactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggcg
tgcaccaccactgcccggctaacttttttgttttctaagtattcatttac
ctatcttcttttgtgtatgcacgagtatatgtgtgtatatgttcatatgt
gtacacacttgtggcactacatgtacttgtgcatcgaggccagaagtcaa
tgtcctcactttacttatttatttatttatttatttatttatttatttat
ttattaagacaaagtcttctactgaacctggagcttgccaagtagctgag
ctggtgagcaagtgagtgctcactcccagaattatccgtttctgcctcct
ccttatgtgaatttccagtagatgtcatcatgcctggcctcgtatgtgag
gtgctgtggatctgaattcaggtcaccttgctcatgtgcaagtgctttac
ccgctggagctcaaaaagttcccagggcccttgcaactttttgggtaaat
tttgagtatttatgtattaattctttattttggcattatagacaatggca
tcatgcttccatcctcttccctcaagcctccc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcccaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaagatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagatttatcgaaag
gacccagtgtagctgtctcttgtgagactttgccggggcctagcaacaca
gaatgggatgctcacagtcagctaatgatggtcccagggctcccaatgaa
ggagtagagaaagtacccaaggagttaaagggatcttcatcctatagtgg
aaacaaattatgaactacccagtaccctgaactttgactctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_13088573_13089708
seq2: B6Ng01-069D07.b_46_1177

seq1  GAATTCAAAGGAGTTGGGTCCTGGCTGGAGGAAGTGGCCTGCTCTGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAGTTGGGTCCTGGCTGGAGGAAGTGGCCTGCTCTGGGGG  50

seq1  TGAGGCTTGGGGGTTATATACTGCCCCCCCCCTGCTTTCTGATTGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTGGGGGTTATATACTGCCCCCCCCCTGCTTTCTGATTGCCAAA  100

seq1  GTTGTATGGCTAGCTGTCTTAAACTCTTGCCACACCTTTCTTCCCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGGCTAGCTGTCTTAAACTCTTGCCACACCTTTCTTCCCTTACA  150

seq1  CTGCCTCTTGCCGTGTATATGGTCAAAGCAATGAGAAAAAGAACTAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTTGCCGTGTATATGGTCAAAGCAATGAGAAAAAGAACTAATAT  200

seq1  GGTACTAAACACTTCAAGAGCAAACATCATCTCTTCTGCTTTCACCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAAACACTTCAAGAGCAAACATCATCTCTTCTGCTTTCACCCCAA  250

seq1  ACCTTTTTCTCCTGTCTTCCCCTTTACAAACAAATACCCACCCCTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTCTCCTGTCTTCCCCTTTACAAACAAATACCCACCCCTCTTTG  300

seq1  CAATGAAGACAAGTAATTGAGAAGATCTGAAGGTGGAAGTGCCATCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGACAAGTAATTGAGAAGATCTGAAGGTGGAAGTGCCATCAAGG  350

seq1  GTGACTAAACTGTTGGGATAAGAAGCTACAACCTATATTCACAATGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAACTGTTGGGATAAGAAGCTACAACCTATATTCACAATGGATG  400

seq1  CCTAGCAACATAGGGCTATAGAAATTTGCTACAAGTGTGCATGCAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAACATAGGGCTATAGAAATTTGCTACAAGTGTGCATGCAACTTT  450

seq1  TTTGTTTTGTTTTGTTTTGTTTTGTTTTTTCCCCGAGACAAGGTTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTTGTTTTTTCCCCGAGACAAGGTTTCTCT  500

seq1  GTATAGCCCTGGCTGTCCTGGAACTCAGTCTGTACACCAGGCTGGCCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCCCTGGCTGTCCTGGAACTCAGTCTGTACACCAGGCTGGCCTCG  550

seq1  AACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  600

seq1  TGCACCACCACTGCCCGGCTAACTTTTTTGTTTTCTAAGTATTCATTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACCACTGCCCGGCTAACTTTTTTGTTTTCTAAGTATTCATTTAC  650

seq1  CTATCTTCTTTTGTGTATGCACGAGTATATGTGTGTATATGTTCATATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCTTTTGTGTATGCACGAGTATATGTGTGTATATGTTCATATGT  700

seq1  GTACACACTTGTGGCACTACATGTACTTGTGCATCGAGGCCAGAAGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACTTGTGGCACTACATGTACTTGTGCATCGAGGCCAGAAGTCAA  750

seq1  TGTCCTCACTTTACTTATTTATTTATTTATTTATTTATTTATTTATTTAT  800
      ||||||||||||||    ||||||||||||||||||||||||||||||||
seq2  TGTCCTCACTTTAC----TTATTTATTTATTTATTTATTTATTTATTTAT  796

seq1  TTATTTATTAAGACAAAGTCTTCTACTGAACCTGGAGCTTGCCAAGTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTAAGACAAAGTCTTCTACTGAACCTGGAGCTTGCCAAGTAGC  846

seq1  TGAGCTGGTGAGCAAGTGAGTGCTCACTCCCAGAATTTATCCGTTTCTGC  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAGCTGGTGAGCAAGTGAGTGCTCACTCCCAGAA-TTATCCGTTTCTGC  895

seq1  CTCCTCCTTATGTGAATTTCCAGTAGAATGTCATCATGCCTGGCCTCGTA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCCTCCTTATGTGAATTTCCAGTAG-ATGTCATCATGCCTGGCCTCGTA  944

seq1  TGTGAGGTGCTGTGGATCTGAATTCAGGTCACCTTGCTCATGTGCCAAGT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGAGGTGCTGTGGATCTGAATTCAGGTCACCTTGCTCATGTG-CAAGT  993

seq1  GCTTTACCCGCT-GAGCTCAAAAAAGTTCCCAGGGCCCCTTGCAACTTTT  1049
      |||||||||||| |||||| ||||||||||||||| ||||||||||||||
seq2  GCTTTACCCGCTGGAGCTC-AAAAAGTTCCCAGGG-CCCTTGCAACTTTT  1041

seq1  GGGTAAAATTTTGAGTATTTTATGTATTTATTTCTCTAATTTTGGCATTA  1099
       ||  |||||||||||| |||||||| ||| |||| | ||||||||||||
seq2  TGGGTAAATTTTGAGTA-TTTATGTA-TTAATTCT-TTATTTTGGCATTA  1088

seq1  TAGTACAATTGCATCATGCCTCC-----CTTCCCT---TCCTCCC  1136
      ||| ||||| ||||||||| |||     |||||||    ||||||
seq2  TAG-ACAATGGCATCATGCTTCCATCCTCTTCCCTCAAGCCTCCC  1132

seq1: chr6_107864347_107864531
seq2: B6Ng01-069D07.g_932_1108 (reverse)

seq1  CTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACC  50
      |||||||||| || | | ||||||||| ||||||||||| ||||| |  |
seq2  CTAGAGTCAA-AG-TTCAGGGTACTGGGTAGTTCATAAT-TTGTTTCCAC  47

seq1  TATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTC  100
      |||| || || ||||||||||| |||||||||||||||||||| ||||| 
seq2  TATA-GGATGAAGATCCCTTTAACTCCTTGGGTACTTTCTCTA-CTCCTT  95

seq1  CATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTC  150
      |||||||||||||| || |||| ||||||||||||||||||||||  |||
seq2  CATTGGGAGCCCTGGGA-CCAT-CATTAGCTGACTGTGAGCATCCCATTC  143

seq1  TGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAG  185
      |||| |||||||||||||||| |||||||||||||
seq2  TGTG-TTGCTAGGCCCCGGCAAAGTCTCACAAGAG  177