BAC Information

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BAC

Clone NameB6Ng01-069N11
Chromosome6 (Build37)
Map Location 94,275,767 - 94,458,000
singlet/doubletdoublet
Overlap geneLOC100043262, LOC665856, Slc25a26
Upstream geneLOC665831, Magi1
Downstream geneLrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912, Suclg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069N11.bB6Ng01-069N11.g
ACCDH888021DH888022
length9141,142
definitionDH888021|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N11, 5' end.DH888022|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,275,767 - 94,276,680)(94,456,827 - 94,458,000)
sequence
gaattcactgagggaagatgttggtaggagtgtgaaaggaatttttgttg
gcttaaggaattgataaatcttcagtcaacttgccttcgcttcctcctcc
tcctccctccctccctccctcccttactcctctttcctttttctggtttc
tttgaggcagggtctcccccaaacaatcccaggttggcctggaacttgct
tcgtagtcaaaagtgacctggaacttctgagccttttgtctcttcctcga
gaactgcaggtgtgtgtcaccatgcctggtttacgggatgctgggaattg
aagccagggtttgtcatgtgttggggatgcaaatactttaacccatacag
ttacatccccagcctcgtgtttcctttaaatctgtgattcgcgattccta
aatataatcgcctttatttatattacatatactcaatgttgcttacctca
aaaacaaacaaacaaacaaacaaacaaatcacaaaatccgaagtcccctt
ttctattttacccatataaacagatgaatgtatattatctagcaaacagg
tatgtgtttatagtaactgaagtgaggttgtcctgcctgtccacgcttat
tattgaaggagaagttgctatttccaggcatcttagaaggacttcactct
ctcttaatcctgacctcaaacctcatggccagttactggtatgatctgca
ttagtccatgaaataatgagtctgggaaagattacagatggggcaagaca
gtcacatagcttatgatccctacccacccaacgccatggactatcctttc
ttctatgtcgatgttgcttgtagctgtcaagtgtcctggaaagtattggg
tgatgtttaggaaaccaaaaaatgagttattgcaaaggtcttgttacgtg
tagacagagcccag
gaattccagtgccacaaggctgagagccactgcactaaggaaccatgctg
aaaaggtgacagtttaaaaattctaactgggggctgtaacagcaaaatca
attttaaaagattatcttttatgttgctgtttgcttgtttggttttggta
taaacatcctgagtcctggaatggattctacagcactctacattctgttt
aaatataatcaaagaacaaaaaattaaattcagaaaaccagctgtaaggc
ttaatgaattttgcgtgttaaaatactcatattattctgaaaacattacc
ttggcttctgagcactgggaatatcaacacccttaccgttaggaaaggat
ccaacagctgcagaagggaccccagcatatatcccacgaaatccaccagc
cttgttaaatccctggggactctgcagccttgtcttaatggtgtccagag
gaaataatatcaagtccacagagacgcctgctacccctccagcctgtgca
aaaggtggggaagagagaagagaaaggtgagctctcagcctcaagccaca
ggccaaatattaatcacttccattcttcttattccatgttagagaaccta
ggttccactaagaaagctaccatttatttgacatgtgaccctaaaagcat
gactcataccctagtctccaaatccttcaaattgggaactgaaatcaata
ctaaaggaatcttcttttttcccacgctggatcagagctgtggccatctg
cccatgctagcaggtattccaccattgagctgtgtcccctgcgatgagga
agtctttaaacaaacatctcacatcttccagtcatgattttgttgcaata
ctcaaaggactggcattttataagaaaataagatgcttatcagagtacta
atttgcacttgttcaggttttttttaccttttaaagaattttatgaatta
attttaacaaaattaaagctccttctaatttgtctatatcaaccactgtt
aaagcatttaaaaaaagaaaaagttaaaagacaaagcattcctaaagatt
cagctagtcgtatggagttcatgctatcttccaagggtgcctagcatagc
agcaagctgggtcctctttctgactaattaggatttgtttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94275767_94276680
seq2: B6Ng01-069N11.b_44_957

seq1  GAATTCACTGAGGGAAGATGTTGGTAGGAGTGTGAAAGGAATTTTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGGGAAGATGTTGGTAGGAGTGTGAAAGGAATTTTTGTTG  50

seq1  GCTTAAGGAATTGATAAATCTTCAGTCAACTTGCCTTCGCTTCCTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGGAATTGATAAATCTTCAGTCAACTTGCCTTCGCTTCCTCCTCC  100

seq1  TCCTCCCTCCCTCCCTCCCTCCCTTACTCCTCTTTCCTTTTTCTGGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCCCTCCCTCCCTCCCTTACTCCTCTTTCCTTTTTCTGGTTTC  150

seq1  TTTGAGGCAGGGTCTCCCCCAAACAATCCCAGGTTGGCCTGGAACTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCAGGGTCTCCCCCAAACAATCCCAGGTTGGCCTGGAACTTGCT  200

seq1  TCGTAGTCAAGAGTGACCTGGAACTTCTGAGCCTTTTGTCTCTTCCTCGA  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGTCAAAAGTGACCTGGAACTTCTGAGCCTTTTGTCTCTTCCTCGA  250

seq1  GAACTGCAGGTGTGTGTCACCATGCCTGGTTTACGGGATGCTGGGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCAGGTGTGTGTCACCATGCCTGGTTTACGGGATGCTGGGAATTG  300

seq1  AAGCCAGGGTTTGTCATGTGTTGGGGATGCAAATACTTTAACCCATACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGGTTTGTCATGTGTTGGGGATGCAAATACTTTAACCCATACAG  350

seq1  TTACATCCCCAGCCTCGTGTTTCCTTTAAATCTGTGATTCGCGATTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCCCAGCCTCGTGTTTCCTTTAAATCTGTGATTCGCGATTCCTA  400

seq1  AATATAATCGCCTTTATTTATATTACATATACTCAATGTTGCTTACCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATCGCCTTTATTTATATTACATATACTCAATGTTGCTTACCTCA  450

seq1  AAAACAAACAAACAAACAAACAAACAAATCACAAAATCCGAAGTCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAACAAACAAACAAATCACAAAATCCGAAGTCCCCTT  500

seq1  TTCTATTTTACCCATATAAACAGATGAATGTATATTATCTAGCAAACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTACCCATATAAACAGATGAATGTATATTATCTAGCAAACAGG  550

seq1  TATGTGTTTATAGTAACTGAAGTGAGGTTGTCCTGCCTGTCCACGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTATAGTAACTGAAGTGAGGTTGTCCTGCCTGTCCACGCTTAT  600

seq1  TATTGAAGGAGAAGTTGCTATTTCCAGGCATCTTAGAAGGACTTCACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGGAGAAGTTGCTATTTCCAGGCATCTTAGAAGGACTTCACTCT  650

seq1  CTCTTAATCCTGACCTCAAACCTCAGGGCCAGTTACTGGTATGATCTGCA  700
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTTAATCCTGACCTCAAACCTCATGGCCAGTTACTGGTATGATCTGCA  700

seq1  TTAGTCAATGAAATAATGAGTCTGGGAAAGATTACAGATGGGCCAAGACA  750
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAGTCCATGAAATAATGAGTCTGGGAAAGATTACAGATGGGGCAAGACA  750

seq1  GCCACATAGCTTATGATCCCAACCCACCCAACGCCATGGACTAGCCTTTC  800
      | |||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  GTCACATAGCTTATGATCCCTACCCACCCAACGCCATGGACTATCCTTTC  800

seq1  TTCTAGGTCGATCTTGCTTGTAGCTGTCAGGTGTCCTGGAAGGTTTTGGG  850
      ||||| |||||| |||||||||||||||| ||||||||||| || |||||
seq2  TTCTATGTCGATGTTGCTTGTAGCTGTCAAGTGTCCTGGAAAGTATTGGG  850

seq1  TGGTGTTCAGGAAACCAGAGAAGGAGTTATTGCAGAGGTCTTGGTACGTG  900
      || |||| ||||||||| | || ||||||||||| |||||||| ||||||
seq2  TGATGTTTAGGAAACCAAAAAATGAGTTATTGCAAAGGTCTTGTTACGTG  900

seq1  GAGACAGAGCCCAG  914
       |||||||||||||
seq2  TAGACAGAGCCCAG  914

seq1: chr6_94456827_94458000
seq2: B6Ng01-069N11.g_68_1209 (reverse)

seq1  TAAAACAAAAAACCTAACTAAGTCAGAAAAGAGGACCCATGCTTGCTTGA  50
      ||||||  ||| ||||| | |||||| |||||||||||| |||||||   
seq2  TAAAAC--AAATCCTAA-TTAGTCAG-AAAGAGGACCCA-GCTTGCT--G  43

seq1  CTATGCCTAGGGAACCTTGGAAAGACGAGAAGAAACTCATAAAAGAACTG  100
      ||||| ||||| | |||||| ||||  || |  |||||   | |  ||| 
seq2  CTATG-CTAGGCACCCTTGG-AAGA-TAGCATGAACTC--CATACGACTA  88

seq1  CTTGAATCTTTAGG-ATGCTTTGTACTTTTTAACTTTTTCTTTTTTTTAA  149
        |||||||||||| |||||||||   ||||||||||||||||||||  |
seq2  GCTGAATCTTTAGGAATGCTTTGT--CTTTTAACTTTTTCTTTTTTT--A  134

seq1  AATGGCTTTAAACAGTGGTTGAATTATAAGAACAAATTAAGAGTGAGCTT  199
      ||| ||||| ||||||||||||  ||||   ||||||| |||  ||||||
seq2  AAT-GCTTT-AACAGTGGTTGA--TATA--GACAAATT-AGAAGGAGCTT  177

seq1  TAATTTTGTTTAAAAAATTAATTCATTAAAATTCATCTAAAAGGTAAAAA  249
      ||||||||||   |||||||||||| |||||||| | |||||||| ||||
seq2  TAATTTTGTT---AAAATTAATTCA-TAAAATTC-TTTAAAAGGT-AAAA  221

seq1  AAAACCTGTACAAGTTGCAAATTAGTACACCTGATAAGCATCTTATTTTC  299
      |||||||| ||||| |||||||||||||  ||||||||||||||||||||
seq2  AAAACCTGAACAAG-TGCAAATTAGTAC-TCTGATAAGCATCTTATTTTC  269

seq1  TTATAAAATGCAAGTCCTTTGAGTATTGCAACAAAAATCATGGACTGGAA  349
      ||||||||||| |||||||||||||||||||| |||||||| ||||||||
seq2  TTATAAAATGCCAGTCCTTTGAGTATTGCAAC-AAAATCAT-GACTGGAA  317

seq1  GATGTGAGATGTTTGTTTAAAGACTTCCTCATCGCTGGGGACACAGCTCA  399
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATGTGAGATGTTTGTTTAAAGACTTCCTCATCGCAGGGGACACAGCTCA  367

seq1  ATGGTGGAATACTTGCTAGCATGGGCAGATGGCCACAGCTCTGATCCAGC  449
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGAATACCTGCTAGCATGGGCAGATGGCCACAGCTCTGATCCAGC  417

seq1  GTGGGAAAAAAGAAGATTCCTTTAGTATTGATTTCAGTTCCCAATTTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAAAAGAAGATTCCTTTAGTATTGATTTCAGTTCCCAATTTGAA  467

seq1  GGATTTGGAGACTAGGGTATGAGTCATGCTTTTAGGGTCACATGTCAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGAGACTAGGGTATGAGTCATGCTTTTAGGGTCACATGTCAAAT  517

seq1  AAATGGTAGCTTTCTTAGTGGAACCTAGGTTCTCTAACATGGAATAAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTAGCTTTCTTAGTGGAACCTAGGTTCTCTAACATGGAATAAGAA  567

seq1  GAATGGAAGTGATTAATATTTGGCCTGTGGCTTGAGGCTGAGAGCTCACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAGTGATTAATATTTGGCCTGTGGCTTGAGGCTGAGAGCTCACC  617

seq1  TTTCTCTTCTCTCTTCCCCACCTTTTGCACAGGCTGGAGGGGTAGCAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTCTCTTCCCCACCTTTTGCACAGGCTGGAGGGGTAGCAGGC  667

seq1  GTCTCTGTGGACTTGATATTATTTCCTCTGGACACCATTAAGACAAGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGGACTTGATATTATTTCCTCTGGACACCATTAAGACAAGGCT  717

seq1  GCAGAGTCCCCAGGGATTTAACAAGGCTGGTGGATTTCGTGGGATATATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCCCCAGGGATTTAACAAGGCTGGTGGATTTCGTGGGATATATG  767

seq1  CTGGGGTCCCTTCTGCAGCTGTTGGATCCTTTCCTAACGGTAAGGGTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCCCTTCTGCAGCTGTTGGATCCTTTCCTAACGGTAAGGGTGTT  817

seq1  GATATTCCCAGTGCTCAGAAGCCAAGGTAATGTTTTCAGAATAATATGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCCCAGTGCTCAGAAGCCAAGGTAATGTTTTCAGAATAATATGAG  867

seq1  TATTTTAACACGCAAAATTCATTAAGCCTTACAGCTGGTTTTCTGAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAACACGCAAAATTCATTAAGCCTTACAGCTGGTTTTCTGAATTT  917

seq1  AATTTTTTGTTCTTTGATTATATTTAAACAGAATGTAGAGTGCTGTAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTGTTCTTTGATTATATTTAAACAGAATGTAGAGTGCTGTAGAA  967

seq1  TCCATTCCAGGACTCAGGATGTTTATACCAAAACCAAACAAGCAAACAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCAGGACTCAGGATGTTTATACCAAAACCAAACAAGCAAACAGC  1017

seq1  AACATAAAAGATAATCTTTTAAAATTGATTTTGCTGTTACAGCCCCCAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAAGATAATCTTTTAAAATTGATTTTGCTGTTACAGCCCCCAGT  1067

seq1  TAGAATTTTTAAACTGTCACCTTTTCAGCATGGTTCCTTAGTGCAGTGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTTAAACTGTCACCTTTTCAGCATGGTTCCTTAGTGCAGTGGC  1117

seq1  TCTCAGCCTTGTGGCACTGGAATTC  1174
      |||||||||||||||||||||||||
seq2  TCTCAGCCTTGTGGCACTGGAATTC  1142