BAC Information

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BAC

Clone NameB6Ng01-069O05
Chromosome6 (Build37)
Map Location 19,856,715 - 20,004,478
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069O05.bB6Ng01-069O05.g
ACCDH888055DH888056
length1,134875
definitionDH888055|Mus musculus domesticus DNA, BAC clone: B6Ng01-069O05, 5' end.DH888056|Mus musculus domesticus DNA, BAC clone: B6Ng01-069O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,003,327 - 20,004,478)(19,856,715 - 19,857,917)
sequence
gaattctctatcagaaaagttgatgatgttattaattcttatttgaaagc
cagattttctcaagttttagacaaattattaagcacaatacaagaactat
tttgctctctcaatgatcctttaaagaacaaatcttggtccaggacatgt
agtctaggaaggtatagcaaagtacctacagagacaagaatgaatacata
gtaaagtgaagctaaatttaatgagtcacccagtatatcctaaataattt
gttaatattttaatcattatgttattctctcaactcttgaatttttaaaa
aaatgattattttaatggagttttccatctatggaattataggatcactt
atatactgtagaaggctgtgaagagaatcatcttttaaaggaatacaaag
tagaaattaccatttaaagtctcaaaaaaaaaaccacacaaaacatcagt
taatctggtttctattaaagtaagaacatccattagaattcttctaaatt
ctgaatatttctttggaacacttcttcatcttgcatcctggctctttatt
ttcatgtatctccactggttgtttttaaaaatttggggacagtatgtata
tttatttgattaaatagaccttaacagttcctggtgtcatatatttaaga
attagctactgtctaattaaagaataaaattcattaaaaggtatgggtat
catagaacaatgaacacagagacacatccagctgtcatatgggaatgtat
atactaatatgttttcacaaagcactgacacatgataaaatatgtaaact
gtctgtattttgtaaccattaatcccttatttatttataaataaaggatc
gtttatttattcattaagctcagaagttttataagaataatattaaatac
aagccataaagattccaaaagaaacaaatacatccacagattatggatat
actaaagcactctgtgtccactaattagaaattacacaatacatgaagct
gcctactcttctccctactatcatagagtacttaatttctagcctgagca
ttaacaacaaaattagtcaaagggaatcaattggaagagaagcaaattcc
tattgcgaatgatgtggtgaatctcagtgacccc
gaattcttttagaaatgaaccagatggattgtgattaaaggcttaaaaga
atgttaaaggaatcttatgtacatgtgtgggatgtgaacatgtgcaagtg
aagcacatggtgcaatgggaggtatcactgaaatccatgaattcttgggt
agagacgatattagtatggtcaaaattgagaaagtgggaatgggtgggag
gagaaccctcatagaggtctgggaaaggggatttctgaagaggagacctg
gaaatgtgaaaacatttgaaatgtaaataaagaaaatatagaagaaaaac
aatttagaaagttgtaggtaggtcagatactgagagttcaaattataatt
attttgtgcacagttttattagtacatttcaggtagttgtatgtctgcat
ttactgaaaagttagtggtacttatcaatccaaaagaagagctgaaggga
aaatctgtagaaagagcttacaacttactagtttagacaagcgatatgca
tcgttgtatacatagataaaggctgtttcataacacaaaggaccttgtag
taagagtggaaatgctcttctctgctcactcttctgcaacagaagaaatc
tacatgcctacagagagtgaagtagcccaaactttggtgttttgttttgt
tttaacatatgacctgccaatgagttgtaactcttgaaacactctgtctg
attgacatgacactgacagtttcccataatatataaatcataccacatcc
tccttgaagtattcaccactctttcaatacagaagaatccttcaatagca
ctgttggtggtttgaaaagaatgacctaagagactctgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20003327_20004478
seq2: B6Ng01-069O05.b_48_1181 (reverse)

seq1  GGGGTCACTTGAGTATTCTACCACATCATCTGCAAATAGTGATATTTTGC  50
      |||||||| |||| |||| ||||||||||  || |||||    | |||| 
seq2  GGGGTCAC-TGAG-ATTC-ACCACATCATTCGC-AATAG---GAATTTG-  42

seq1  CTTCTTCCTTTCCAATTTGTATCCCTTTGACCTTATTTTGTTGTTTAATT  100
         ||||  |||||| |||  ||||||||| || |||||||||||  | |
seq2  ---CTTCTCTTCCAA-TTGATTCCCTTTGA-CTAATTTTGTTGTT--AAT  85

seq1  GCTCAGGCTAGGAATTTAAGTACTCTATGAATAGGTAGGGAG-AGAGTAG  149
      |||||||||| ||| |||||||||||||| ||| |||||||| |||||||
seq2  GCTCAGGCTA-GAAATTAAGTACTCTATG-ATA-GTAGGGAGAAGAGTAG  132

seq1  GCAGCCTCATGTATTGTGTAATTTCCTAATTAGTGGACACAGAGTGCTTT  199
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  GCAGCTTCATGTATTGTGTAATTT-CTAATTAGTGGACACAGAGTGCTTT  181

seq1  AGTATATCCATAATCTGTGGATGTATTTGTTTCTTTTGGAATCTTTATGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCCATAATCTGTGGATGTATTTGTTTCTTTTGGAATCTTTATGG  231

seq1  CTTGTATTTAATATTATTCTTATAAAACTTCTGAGCTTAATGAATAAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTAATATTATTCTTATAAAACTTCTGAGCTTAATGAATAAATA  281

seq1  AACGATCCTTTATTTATAAATAAATAAGGGATTAATGGTTACAAAATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCCTTTATTTATAAATAAATAAGGGATTAATGGTTACAAAATACA  331

seq1  GACAGTTTACATATTTTATCATGTGTCAGTGCTTTGTGAAAACATATTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTACATATTTTATCATGTGTCAGTGCTTTGTGAAAACATATTAG  381

seq1  TATATACATTCCCATATGACAGCTGGATGTGTCTCTGTGTTCATTGTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATTCCCATATGACAGCTGGATGTGTCTCTGTGTTCATTGTTCT  431

seq1  ATGATACCCATACCTTTTAATGAATTTTATTCTTTAATTAGACAGTAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCCATACCTTTTAATGAATTTTATTCTTTAATTAGACAGTAGCT  481

seq1  AATTCTTAAATATATGACACCAGGAACTGTTAAGGTCTATTTAATCAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAAATATATGACACCAGGAACTGTTAAGGTCTATTTAATCAAAT  531

seq1  AAATATACATACTGTCCCCAAATTTTTAAAAACAACCAGTGGAGATACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACATACTGTCCCCAAATTTTTAAAAACAACCAGTGGAGATACAT  581

seq1  GAAAATAAAGAGCCAGGATGCAAGATGAAGAAGTGTTCCAAAGAAATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAGAGCCAGGATGCAAGATGAAGAAGTGTTCCAAAGAAATATT  631

seq1  CAGAATTTAGAAGAATTCTAATGGATGTTCTTACTTTAATAGAAACCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTAGAAGAATTCTAATGGATGTTCTTACTTTAATAGAAACCAGA  681

seq1  TTAACTGATGTTTTGTGTGGTTTTTTTTTTGAGACTTTAAATGGTAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGATGTTTTGTGTGGTTTTTTTTTTGAGACTTTAAATGGTAATTT  731

seq1  CTACTTTGTATTCCTTTAAAAGATGATTCTCTTCACAGCCTTCTACAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGTATTCCTTTAAAAGATGATTCTCTTCACAGCCTTCTACAGTA  781

seq1  TATAAGTGATCCTATAATTCCATAGATGGAAAACTCCATTAAAATAATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGATCCTATAATTCCATAGATGGAAAACTCCATTAAAATAATCA  831

seq1  TTTTTTTAAAAATTCAAGAGTTGAGAGAATAACATAATGATTAAAATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAATTCAAGAGTTGAGAGAATAACATAATGATTAAAATATT  881

seq1  AACAAATTATTTAGGATATACTGGGTGACTCATTAAATTTAGCTTCACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTATTTAGGATATACTGGGTGACTCATTAAATTTAGCTTCACTT  931

seq1  TACTATGTATTCATTCTTGTCTCTGTAGGTACTTTGCTATACCTTCCTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTATTCATTCTTGTCTCTGTAGGTACTTTGCTATACCTTCCTAG  981

seq1  ACTACATGTCCTGGACCAAGATTTGTTCTTTAAAGGATCATTGAGAGAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATGTCCTGGACCAAGATTTGTTCTTTAAAGGATCATTGAGAGAGC  1031

seq1  AAAATAGTTCTTGTATTGTGCTTAATAATTTGTCTAAAACTTGAGAAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTCTTGTATTGTGCTTAATAATTTGTCTAAAACTTGAGAAAAT  1081

seq1  CTGGCTTTCAAATAAGAATTAATAACATCATCAACTTTTCTGATAGAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTCAAATAAGAATTAATAACATCATCAACTTTTCTGATAGAGAA  1131

seq1  TTC  1152
      |||
seq2  TTC  1134

seq1: chr6_19856715_19857917
seq2: B6Ng01-069O05.g_70_944

seq1  GAATTCTTTTAGAAATGAACCAGATGGATTGTGATTAAAGGCTTAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGAAATGAACCAGATGGATTGTGATTAAAGGCTTAAAAGA  50

seq1  ATGTTAAAGGAATCTTATGTACATGTGTGGGATGTGAACATGTGCAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAGGAATCTTATGTACATGTGTGGGATGTGAACATGTGCAAGTG  100

seq1  AAGCACATGGTGCAATGGGAGGTATCACTGAAATCCATGAATTCTTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATGGTGCAATGGGAGGTATCACTGAAATCCATGAATTCTTGGGT  150

seq1  AGAGACGATATTAGTATGGTCAAAATTGAGAAAGTGGGAATGGGTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGATATTAGTATGGTCAAAATTGAGAAAGTGGGAATGGGTGGGAG  200

seq1  GAGAACCCTCATAGAGGTCTGGGAAAGGGGATTTCTGAAGAGGAGACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCTCATAGAGGTCTGGGAAAGGGGATTTCTGAAGAGGAGACCTG  250

seq1  GAAATGTGAAAACATTTGAAATGTAAATAAAGAAAATATAGAAGAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGAAAACATTTGAAATGTAAATAAAGAAAATATAGAAGAAAAAC  300

seq1  AATTTAGAAAGTTGTAGGTAGGTCAGATACTGAGAGTTCAAATTATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAAAGTTGTAGGTAGGTCAGATACTGAGAGTTCAAATTATAATT  350

seq1  ATTTTGTGCACAGTTTTATTAGTACATTTCAGGTAGTTGTATGTCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGCACAGTTTTATTAGTACATTTCAGGTAGTTGTATGTCTGCAT  400

seq1  TTACTGAAAAGTTAGTGGTACTTATCAATCCAAAAGAAGAGCTGAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAAGTTAGTGGTACTTATCAATCCAAAAGAAGAGCTGAAGGGA  450

seq1  AAATCTGTAGAAAGAGCTTACAACTTACTAGTTTAGACAAGCGATATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTAGAAAGAGCTTACAACTTACTAGTTTAGACAAGCGATATGCA  500

seq1  TCGTTGTATACATAGATAAAGGCTGTTTCATAACACAAAGGACCTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGTATACATAGATAAAGGCTGTTTCATAACACAAAGGACCTTGTAG  550

seq1  TAAGAGTGGAAATGCTCTTCTCTGCTCACTCTTCTGCAACAGAAGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGGAAATGCTCTTCTCTGCTCACTCTTCTGCAACAGAAGAAATC  600

seq1  TACATGCCTACAGAGAGTGAAGTAGCCCAAACTTTGGTGTTTTGTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCTACAGAGAGTGAAGTAGCCCAAACTTTGGTGTTTTGTTTTGT  650

seq1  TTTAACATATGACCTGCCAATGAGTTGTAACTCTTGAAACACTCTGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATATGACCTGCCAATGAGTTGTAACTCTTGAAACACTCTGTCTG  700

seq1  ATTGACATGACACTGACAG-TTCCCATAATATATAAATCATACCACATCC  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTGACATGACACTGACAGTTTCCCATAATATATAAATCATACCACATCC  750

seq1  TCCTTGAAGTATTCACCACTCTTTCAATACAGAAGAATCCTTCAATAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGTATTCACCACTCTTTCAATACAGAAGAATCCTTCAATAGCA  800

seq1  CTG-TGGTGGTTTGAAAAAGAATGACCTAAGAGACTCTGTGTGTGTGTGT  848
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTGGTTTG-AAAAGAATGACCTAAGAGACTCTGTGTGTGTGTGT  849

seq1  GTGTGTGTGTGTGTGTGTGT---GTGTGTGTGTGTGTGCATGTGCGTGTG  895
      ||||||||||||||||||||   |||                        
seq2  GTGTGTGTGTGTGTGTGTGTAGAGTG------------------------  875

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCCTGTACTATTAGGA  945
                                                        
seq2  --------------------------------------------------  875

seq1  GGTGACATTTTCAGAGTTGGTGTGGCTTTGTTGTTAGAAGTGTGACACAG  995
                                                        
seq2  --------------------------------------------------  875

seq1  TAGATGTGGGCCTTGAGAACTTATAAGCTGAAGTCTGGCCAGTCTGATAC  1045
                                                        
seq2  --------------------------------------------------  875

seq1  ACTCTCCTGCTGTCTATTGATCAAGAGGAAGAATTTTCAGTTCCTTCTCT  1095
                                                        
seq2  --------------------------------------------------  875

seq1  AGCATTATGTTTGCCTGTATGCAGCCATGTTCCCCACTGTGAAGATAATG  1145
                                                        
seq2  --------------------------------------------------  875

seq1  GACTAAACTTCTGAAACTGTAAGCCATCCTCAATGAAAGGTTTTCCTTTA  1195
                                                        
seq2  --------------------------------------------------  875

seq1  TAAGAGTG  1203
              
seq2  --------  875