BAC Information

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BAC

Clone NameB6Ng01-070E15
Chromosome6 (Build37)5 (Build37)
Map Location 37,426,418 - 37,427,605129,227,496 - 129,228,007
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
Downstream geneAkr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070E15.bB6Ng01-070E15.g
ACCDH888337DH888338
length1,1711,165
definitionDH888337|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E15, 5' end.DH888338|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,426,418 - 37,427,605)(129,227,496 - 129,228,007)
sequence
gaattctttgagttaattttgtattcagccactttgctgaaagtgcttat
cagctggtagaatatgggggatctcctatatatactatcatatctgagga
tagcgaaactttgacttcttcctttccaatgtctaatcccttgatctcct
ttagttgccttattgtctagctaatcaatcacatctccataaagttgaat
gtttcaggaaatcatctctcagtaaaacaaagctaaaaagaagccaggaa
cttctaaagtacatcgtagaaagacaagcagtttgcatgagccaaaattt
atttttgctttggacatggcattacccaccaaaacaattctgggcacagt
gagagcagagaggaattccatgagatggaaacaatgacatttatgtaatt
ggcacagcaacgcagagtgacaatttcagcagactactgtgaagcgtctc
taagatctgggaatgaaaacagtacatgatgggactcagggcctccactt
cagaactgcaaccaaattactcacagagtttacatactagcttgtagatt
ttgtctgggagaaaagatattctccaaattacagctgaattaccaatgga
ccactagctacattaacaatctgtcaatttgtttccaagagttttagaaa
atcttcatatatatatatactggtttttcaagacagggtttctctgtata
gccctggatgtcctggaactcactttgtagaccagtttggcctcgaactc
agaaatctgcctgtctctgcctcccaagtgctgggattaaaggcgtgggc
caccactgcccggctcttttatatctttatagattttataaacctcttta
ttttattattatttattagatattttctttatttacatttcaaatgttat
tccctttcctggcttctcctccaaaaacccctatcccatcacctctcccc
tgatcaccagcccacccactcccgcttccccaccctgacattcccctaca
ctggggcatccagcttctcagaccaaggcctctccttctattgatgttct
gaaaagtcatctctgctacatatgcagatgagtcatggttcctccatgat
acctctgtggtggttaatccatgagagctctgggtacttgtttgattaat
tgtgttcctccttggactgca
gaattctcacccgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatcgttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgacccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaatttggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
gtggagagctagagaaagtagccaggagctaaagggatctgcaaccctat
agcggacacattatgactacagtacctcggagctcttgactctagctgca
tattttttcaaagatgctagtcgccatcactgaaagagaggtccaatgaa
cccgcactttatatggcctcagtacagggacgctcaggcaaaggggaagt
gggtggtgtgtatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37426418_37427605
seq2: B6Ng01-070E15.b_44_1214 (reverse)

seq1  TGCAGTCCCATAGGAGGAACAACAATATAAACCAACAAGTACCCCCAGAG  50
      ||||||||   ||||||||| ||||| ||| | ||||||||  |||||||
seq2  TGCAGTCC--AAGGAGGAAC-ACAAT-TAATCAAACAAGTA--CCCAGAG  44

seq1  CTCTCATGGATTAAACCACCAACCAAAGAGTATACATGGAGGGACCCATG  100
      |||||||||||| ||||||||  || || |||| |||||| ||| |||||
seq2  CTCTCATGGATT-AACCACCA--CAGAG-GTAT-CATGGA-GGAACCATG  88

seq1  ACTCCATCTGCATATGTAGCAGAGGATGACCTTTTCAG-ACATCAATAGA  149
      ||| ||||||||||||||||||| ||||| |||||||| |||||||||||
seq2  ACT-CATCTGCATATGTAGCAGA-GATGA-CTTTTCAGAACATCAATAGA  135

seq1  AGGAGAGGCCCTTGGTCCTGAGAAGGCTGGATGCCCCAGTGTAGGGGAAT  199
      |||||||| ||||||| ||||||| |||||||||||||||||||||||||
seq2  AGGAGAGG-CCTTGGT-CTGAGAA-GCTGGATGCCCCAGTGTAGGGGAAT  182

seq1  GTCAGGGTGGGGAAGCGGGAGTGGGTGGGCTGGTGATCAGGGGAGAGGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTGGGGAAGCGGGAGTGGGTGGGCTGGTGATCAGGGGAGAGGTG  232

seq1  ATGGGATAGGGGTTTTTGGAGGAGAAGCCAGGAAAGGGAATAACATTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATAGGGGTTTTTGGAGGAGAAGCCAGGAAAGGGAATAACATTTGA  282

seq1  AATGTAAATAAAGAAAATATCTAATAAATAATAATAAAATAAAGAGGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATAAAGAAAATATCTAATAAATAATAATAAAATAAAGAGGTTT  332

seq1  ATAAAATCTATAAAGATATAAAAGAGCCGGGCAGTGGTGGCCCACGCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCTATAAAGATATAAAAGAGCCGGGCAGTGGTGGCCCACGCCTT  382

seq1  TAATCCCAGCACTTGGGAGGCAGAGACAGGCAGATTTCTGAGTTCGAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTGGGAGGCAGAGACAGGCAGATTTCTGAGTTCGAGGC  432

seq1  CAAACTGGTCTACAAAGTGAGTTCCAGGACATCCAGGGCTATACAGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGGTCTACAAAGTGAGTTCCAGGACATCCAGGGCTATACAGAGAA  482

seq1  ACCCTGTCTTGAAAAACCAGTATATATATATATGAAGATTTTCTAAAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTTGAAAAACCAGTATATATATATATGAAGATTTTCTAAAACT  532

seq1  CTTGGAAACAAATTGACAGATTGTTAATGTAGCTAGTGGTCCATTGGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAACAAATTGACAGATTGTTAATGTAGCTAGTGGTCCATTGGTAA  582

seq1  TTCAGCTGTAATTTGGAGAATATCTTTTCTCCCAGACAAAATCTACAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGTAATTTGGAGAATATCTTTTCTCCCAGACAAAATCTACAAGC  632

seq1  TAGTATGTAAACTCTGTGAGTAATTTGGTTGCAGTTCTGAAGTGGAGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTAAACTCTGTGAGTAATTTGGTTGCAGTTCTGAAGTGGAGGCC  682

seq1  CTGAGTCCCATCATGTACTGTTTTCATTCCCAGATCTTAGAGACGCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCCATCATGTACTGTTTTCATTCCCAGATCTTAGAGACGCTTCA  732

seq1  CAGTAGTCTGCTGAAATTGTCACTCTGCGTTGCTGTGCCAATTACATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTCTGCTGAAATTGTCACTCTGCGTTGCTGTGCCAATTACATAAA  782

seq1  TGTCATTGTTTCCATCTCATGGAATTCCTCTCTGCTCTCACTGTGCCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTTTCCATCTCATGGAATTCCTCTCTGCTCTCACTGTGCCCAG  832

seq1  AATTGTTTTGGTGGGTAATGCCATGTCCAAAGCAAAAATAAATTTTGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTGGTGGGTAATGCCATGTCCAAAGCAAAAATAAATTTTGGCT  882

seq1  CATGCAAACTGCTTGTCTTTCTACGATGTACTTTAGAAGTTCCTGGCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAACTGCTTGTCTTTCTACGATGTACTTTAGAAGTTCCTGGCTTC  932

seq1  TTTTTAGCTTTGTTTTACTGAGAGATGATTTCCTGAAACATTCAACTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCTTTGTTTTACTGAGAGATGATTTCCTGAAACATTCAACTTTA  982

seq1  TGGAGATGTGATTGATTAGCTAGACAATAAGGCAACTAAAGGAGATCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGTGATTGATTAGCTAGACAATAAGGCAACTAAAGGAGATCAAG  1032

seq1  GGATTAGACATTGGAAAGGAAGAAGTCAAAGTTTCGCTATCCTCAGATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGACATTGGAAAGGAAGAAGTCAAAGTTTCGCTATCCTCAGATAT  1082

seq1  GATAGTATATATAGGAGATCCCCCATATTCTACCAGCTGATAAGCACTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATATATAGGAGATCCCCCATATTCTACCAGCTGATAAGCACTTT  1132

seq1  CAGCAAAGTGGCTGAATACAAAATTAACTCAAAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGTGGCTGAATACAAAATTAACTCAAAGAATTC  1171

seq1: chr5_129227496_129228007
seq2: B6Ng01-070E15.g_1021_1230 (reverse)

seq1  CTATACACACCACCCATCACTCTCCTGAGCACTTCTCCTTCTTTTCGTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCTTCTTCTTCTTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCTTCCTTCTTCCTCCTTCTTCCTCCTCCTCCTCCTTCTTCTTTTTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATACCAGAAGTCCCCCATTGCCACCCACCCCCACTCCCCTAC---CCACC  297
                                          |  |||   |||||
seq2  ------------------------------------CTATACACACCACC  14

seq1  CACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTG-GGGCATATAAAG  346
      |||| |||||||   |||   ||||  |||||||||| || |||||||||
seq2  CACTTCCCCTTT---GCCTGAGCGT--CCCTGTACTGAGGCCATATAAAG  59

seq1  TTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATC  396
        |||| || || ||| ||||||||| ||||||||| |||||||  ||||
seq2  --TGCGGGTTCATTGGACCTCTCTTT-CAGTGATGG-CGACTAG--CATC  103

seq1  CCCTGATACATATGCAGTTAGAGTCAAGAGCTCCGGGGGGTACTGGTTAG  446
           | | |||||||| ||||||||||||||||  | |||||||  |||
seq2  TTTGAAAAAATATGCAGCTAGAGTCAAGAGCTCC--GAGGTACTG--TAG  149

seq1  TTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGG  496
       |||||||| |||  |  |||||||||||||||||||||||||||| |||
seq2  -TCATAATG-TGT--CCGCTATAGGGTTGCAGATCCCTTTAGCTCC-TGG  194

seq1  GTACTTTCTCTAGCTC  512
       |||||||||||||||
seq2  CTACTTTCTCTAGCTC  210