BAC Information

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BAC

Clone NameB6Ng01-070G07
Chromosome6 (Build37)
Map Location 98,858,356 - 99,054,160
singlet/doubletdoublet
Overlap geneFoxp1
Upstream geneMitf, Gm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070G07.bB6Ng01-070G07.g
ACCDH888412DH888413
length1,2061,071
definitionDH888412|Mus musculus domesticus DNA, BAC clone: B6Ng01-070G07, 5' end.DH888413|Mus musculus domesticus DNA, BAC clone: B6Ng01-070G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,052,934 - 99,054,160)(98,858,356 - 98,859,256)
sequence
gaattccatttgaaggcaattagaagcattcaagtctccccaagtgtgtt
gttccctgctgttctgcgagcacaaggacctttgttctttaattagagag
aggactagagctcattaattgttgtttcatgcagtattggctccaacaag
aggcaacaatgcattgcaaggtaaagtccacctgtaccagggtggctctc
cgagttcaccaggctgtgaaaagataaatggggtctctgacaggctctgc
ctctgacctgaacttttctcaagtacctagctggctgtttatcaatcttg
agaacaaaatgtcttttagatgccaggaggcatcccagcttctgtagaaa
tctagaacttgacttttgttgaaagcctatcttcttccagaaagcaagcc
agctaggatctctttgcagctccttagtacgtctgtgaacactgcctaga
agccttagagcccactgagtatgggtgcattgttaagaaacttcacagaa
acagttactgcaatgatttgtagaccaatttttactgctaccatagccag
agggtgtacaaacgaaatcagaaggcctatgctgcagcagttacaacaga
ggcttccagttcccacagaagcaggcgtgtcttctgtatccaggaaaccc
ccacctctagactgatccccagtgcacatgactgatgaatatcaaggttg
cagggaagaagaaagatgagcaactttatctccgcaaaaacatctcaaga
catcattgaatggataaggtttttctgggactgggctaggatggactgtt
ggggatgtcttgaaataaaacgctatggagaatcggatatgggggcatga
aattgggcaggggagcggtgagtttcatgttccttttcattctccctgag
aaggggtcatgtgtctgtcagtggctaactccagaaggactcggatcctg
ggctttggtgaggtctccctctatcaagccccttaacaattctcctaatc
agtgtttgctctcctcctttcatctttgctgaagcatgaattacttgggg
gagccataaagctcatggaaggacattgttacagaagggctttgcttctt
aaagaaacaggaccaggaactgaggctggcattctcagaaaggtgaattc
gaactaatctctccagattctactgttagagcattaacttgcatgtagtc
gttttt
gaattcactttgtaaaccaggctggccttgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcgtgagccaccatgcccggcta
tagctggatctttaggtagagctatttccaattttctgagaaactgtcag
attgatttccagagtggttgtgcaaatcccaccagctaaggagtagcacc
ccctttctccacatcctcaccagcatatactgcagcttgaaaatttttta
ttttagccatgctggttggagtgaggtggaatctcaggatccttttgatt
tgcatttccctgatgtaaggatgttgaacatttctttaagtgtttcttgg
cctctgttgagaactctctgtttagctctgtactccattttttttttttt
aaattgggttatttggtttgctggagtctaacttcttgagttcattatat
attttggatattagccctctattggatgtagggttagtgaagatcttttc
ccagactgtaggctgctgttttgtcctcttgacagtgtcctttgccttac
agaagcttttcaggaagttaaagaagaaaggtccaagtgaggatgcttca
atcacacttagaagggggaacaaaattcctgcaggttttcctctgatctc
aatgtgcatcccatggcacagacacaccatccctctccaatacaaaaaaa
tgaatgtgagaacatagtgctgatttagacactggagaggccattctctt
tagtgttatagactttaacccattgtcttttcacctctgtcgcctgtaag
ataaatctgctgtcattcttctcttaatttctctacaaaacttatatgtt
ttccttgctgctttaaaactgctctcttcccactgggttcattatgatgg
gacttgcagttgactaagcttctttgagtaggaatataactcatgcagac
ttgaggaagggctcatcattatatcttctagagttttttttttttttaaa
tgctgatacactactttggagatcctcttttctgatgcctcactcttctg
actcctagtccaatagttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99052934_99054160
seq2: B6Ng01-070G07.b_46_1251 (reverse)

seq1  AAAAACCCCATACATAGCAAGTTAGATGTGCCTCCTTAACAGGTAGGGAA  50
      ||||||  | ||||| |||||||| |||   |||  ||||| |||  |||
seq2  AAAAACGAC-TACAT-GCAAGTTA-ATG---CTC--TAACA-GTA--GAA  39

seq1  TCTGGGGGAGAGATTTTGGTTTCGATATTCACCTTTTCTG-GGATGCCAG  99
      |||   |||||||||     ||||| ||||||| |||||| | |||||| 
seq2  TCT---GGAGAGATT---AGTTCGA-ATTCACC-TTTCTGAGAATGCCA-  80

seq1  GCCTCCAGTTCCCTGGTCCCTGTTTCTTTTATGAAGCAAAGCCCTCTTGT  149
      |||| ||||| |||||| |||||||| |||| |||||||||||||  || 
seq2  GCCT-CAGTT-CCTGGT-CCTGTTTC-TTTAAGAAGCAAAGCCCTTCTG-  125

seq1  TAACAATGT-CTTCCATGAGCTTTATGGCT-CCACAAGTAATTCATGCTT  197
      ||||||||| |||||||||||||||||||| || ||||||||||||||||
seq2  TAACAATGTCCTTCCATGAGCTTTATGGCTCCCCCAAGTAATTCATGCTT  175

seq1  CAGCAAAGATGGAAGGA-GAGAGCAAACACTGA-TAGGAGAATTGTTAAG  245
      ||||||||||| ||||| ||||||||||||||| ||||||||||||||||
seq2  CAGCAAAGATGAAAGGAGGAGAGCAAACACTGATTAGGAGAATTGTTAAG  225

seq1  GGGCTTGATAGA-GGAGACCTCACCAAAGCCCAGGATCCCGAGTCCTTCT  294
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  GGGCTTGATAGAGGGAGACCTCACCAAAGCCCAGGAT-CCGAGTCCTTCT  274

seq1  GGAGTTAGCCACCTGACAGACACATGACCCCTTCTCAGGGAGAATGAAAA  344
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAGCCA-CTGACAGACACATGACCCCTTCTCAGGGAGAATGAAAA  323

seq1  GGAACATGAAACTCACCGCTCCCCTGCCCAATTTCATGCCCCCATATCCG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGAAACTCACCGCTCCCCTGCCCAATTTCATGCCCCCATATCCG  373

seq1  ATTCTCCATAGCCTTTTATTTCAAGACATCCCCAACAGTCCATCCTAGCC  444
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCATAGCGTTTTATTTCAAGACATCCCCAACAGTCCATCCTAGCC  423

seq1  CAGTCCCAGAAAAACCTTATCCATTCAATGATGTCTTGAGATGTTTTTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAGAAAAACCTTATCCATTCAATGATGTCTTGAGATGTTTTTGC  473

seq1  GGAGATAAAGTTGCTCATCTTTCTTCTTCCCTGCAACCTTGATATTCATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAAGTTGCTCATCTTTCTTCTTCCCTGCAACCTTGATATTCATC  523

seq1  AGTCATGTGCACTGGGGATCAGTCTAGAGGTGGGGGTTTCCTGGATACAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTGCACTGGGGATCAGTCTAGAGGTGGGGGTTTCCTGGATACAG  573

seq1  AAGACACGCCTGCTTCTGTGGGAACTGGAAGCCTCTGTTGTAACTGCTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACGCCTGCTTCTGTGGGAACTGGAAGCCTCTGTTGTAACTGCTGC  623

seq1  AGCATAGGCCTTCTGATTTCGTTTGTACACCCTCTGGCTATGGTAGCAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGCCTTCTGATTTCGTTTGTACACCCTCTGGCTATGGTAGCAGT  673

seq1  AAAAATTGGTCTACAAATCATTGCAGTAACTGTTTCTGTGAAGTTTCTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGGTCTACAAATCATTGCAGTAACTGTTTCTGTGAAGTTTCTTA  723

seq1  ACAATGCACCCATACTCAGTGGGCTCTAAGGCTTCTAGGCAGTGTTCACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCACCCATACTCAGTGGGCTCTAAGGCTTCTAGGCAGTGTTCACA  773

seq1  GACGTACTAAGGAGCTGCAAAGAGATCCTAGCTGGCTTGCTTTCTGGAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTACTAAGGAGCTGCAAAGAGATCCTAGCTGGCTTGCTTTCTGGAAG  823

seq1  AAGATAGGCTTTCAACAAAAGTCAAGTTCTAGATTTCTACAGAAGCTGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGCTTTCAACAAAAGTCAAGTTCTAGATTTCTACAGAAGCTGGG  873

seq1  ATGCCTCCTGGCATCTAAAAGACATTTTGTTCTCAAGATTGATAAACAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCTGGCATCTAAAAGACATTTTGTTCTCAAGATTGATAAACAGC  923

seq1  CAGCTAGGTACTTGAGAAAAGTTCAGGTCAGAGGCAGAGCCTGTCAGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGTACTTGAGAAAAGTTCAGGTCAGAGGCAGAGCCTGTCAGAGA  973

seq1  CCCCATTTATCTTTTCACAGCCTGGTGAACTCGGAGAGCCACCCTGGTAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTATCTTTTCACAGCCTGGTGAACTCGGAGAGCCACCCTGGTAC  1023

seq1  AGGTGGACTTTACCTTGCAATGCATTGTTGCCTCTTGTTGGAGCCAATAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACTTTACCTTGCAATGCATTGTTGCCTCTTGTTGGAGCCAATAC  1073

seq1  TGCATGAAACAACAATTAATGAGCTCTAGTCCTCTCTCTAATTAAAGAAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAAACAACAATTAATGAGCTCTAGTCCTCTCTCTAATTAAAGAAC  1123

seq1  AAAGGTCCTTGTGCTCGCAGAACAGCAGGGAACAACACACTTGGGGAGAC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCTTGTGCTCGCAGAACAGCAGGGAACAACACACTTGGGGAGAC  1173

seq1  TTGAATGCTTCTAATTGCCTTCAAATGGAATTC  1227
      |||||||||||||||||||||||||||||||||
seq2  TTGAATGCTTCTAATTGCCTTCAAATGGAATTC  1206

seq1: chr6_98858356_98859256
seq2: B6Ng01-070G07.g_247_1136

seq1  CCAGCTAAGGAGTAGCACCCCCTTTCTCCACATCCTCACCAGCATATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAAGGAGTAGCACCCCCTTTCTCCACATCCTCACCAGCATATACT  50

seq1  GCAGCTTGAAAATTTTTTATTTTAGCCATGCTGGTTGGAGTGAGGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTGAAAATTTTTTATTTTAGCCATGCTGGTTGGAGTGAGGTGGAA  100

seq1  TCTCAGGATCCTTTTGATTTGCATTTCCCTGATGTAAGGATGTTGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGATCCTTTTGATTTGCATTTCCCTGATGTAAGGATGTTGAACAT  150

seq1  TTCTTTAAGTGTTTCTTGGCCTCTGTTGAGAACTCTCTGTTTAGCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGTGTTTCTTGGCCTCTGTTGAGAACTCTCTGTTTAGCTCTGT  200

seq1  ACTCCATTTTTTTTTTTTTAAATTGGGTTATTTGGTTTGCTGGAGTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTTTTTTTTTTTAAATTGGGTTATTTGGTTTGCTGGAGTCTAA  250

seq1  CTTCTTGAGTTCATTATATATTTTGGATATTAGCCCTCTATTGGATGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGAGTTCATTATATATTTTGGATATTAGCCCTCTATTGGATGTAG  300

seq1  GGTTAGTGAAGATCTTTTCCCAGACTGTAGGCTGCTGTTTTGTCCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGAAGATCTTTTCCCAGACTGTAGGCTGCTGTTTTGTCCTCTTG  350

seq1  ACAGTGTCCTTTGCCTTACAGAAGCTTTTCAGGAAGTTAAAGAAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCCTTTGCCTTACAGAAGCTTTTCAGGAAGTTAAAGAAGAAAGG  400

seq1  TCCAAGTGAGGATGCTTCAATCACACTTAGAAGGGGGAACAAAATTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGAGGATGCTTCAATCACACTTAGAAGGGGGAACAAAATTCCTG  450

seq1  CAGGTTTTCCTCTGATCTCAATGTGCATCCCATGGCACAGACACACCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTCCTCTGATCTCAATGTGCATCCCATGGCACAGACACACCATC  500

seq1  CCTCTCCAATACAAAAAAATGAATGTGAGAACATAGTGCTGATTTAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCAATACAAAAAAATGAATGTGAGAACATAGTGCTGATTTAGACA  550

seq1  CTGGAGAGGCCATTCTCTTTAGTGTTATAGACTTTAACCCATTGTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGGCCATTCTCTTTAGTGTTATAGACTTTAACCCATTGTCTTTT  600

seq1  CACCTCTGTCGCCTGTAAGATAAATCTGCTGTCATTCTTCTCTTAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGTCGCCTGTAAGATAAATCTGCTGTCATTCTTCTCTTAATTTC  650

seq1  TCTACAAAACTTATATGTTTTCCTTGCTGCTTTAAAACTGCTCCCTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  TCTACAAAACTTATATGTTTTCCTTGCTGCTTTAAAACTGCTCTCTT-CC  699

seq1  CACTGGTTTCATTATGATGGGACTTGCAGTTGACTAAGCTTCTTTTGAGT  750
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  CACTGGGTTCATTATGATGGGACTTGCAGTTGACTAAGCTTC-TTTGAGT  748

seq1  AGGAATATAACTCATGCAGACTTGAGGGAAGGGCTCATCATTATATCTTC  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAATATAACTCATGCAGACTTGA-GGAAGGGCTCATCATTATATCTTC  797

seq1  TAAGAGTTTTTTTTTTTTTTTAAATGCCTGATACACTACTTTGGAGATTC  850
      | |||| ||||||||||||||||||| ||||||||||||||||||||| |
seq2  T-AGAG-TTTTTTTTTTTTTTAAATG-CTGATACACTACTTTGGAGATCC  844

seq1  TCTTTTCTTGAGTGCCTCACTTCTTCTGACTCCTAGGTCCATTATGTTCC  900
      ||||||| ||| |||||||| |||||||||||||| ||||| || |||||
seq2  TCTTTTC-TGA-TGCCTCAC-TCTTCTGACTCCTA-GTCCAATA-GTTCC  889

seq1  C  901
      |
seq2  C  890