BAC Information

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BAC

Clone NameB6Ng01-070K16
Chromosome6 (Build37)
Map Location 55,306,915 - 55,451,876
singlet/doubletdoublet
Overlap geneGhrhr, Adcyap1r1
Upstream geneWipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1
Downstream geneLOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070K16.bB6Ng01-070K16.g
ACCDH888602DH888603
length1,090893
definitionDH888602|Mus musculus domesticus DNA, BAC clone: B6Ng01-070K16, 5' end.DH888603|Mus musculus domesticus DNA, BAC clone: B6Ng01-070K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,306,915 - 55,308,012)(55,450,981 - 55,451,876)
sequence
gaattccaaatcaaccactgtgagtttgatgctatcctggtcaacatgag
gcagagtcagacagcctggcttagaacctggggtctgataccaaccattt
gatcttcaatgatcactgtggcctcagtttctccatctacagaatgggtc
attgtggacttagactctggcaccacagagctctggctcacctttcttag
ttccccccatctgcagctgctgttctcttccacctatacattaaaggctg
gataaaccccaagtggggttgagtcaccatttccccaggcaactattttc
cccaagtacagggggcgacaatgcagagtggagaaagaaaagaaacagaa
ctaaaggagaaagtgggaagggcttggcctggaggtgcctcactttgtgg
atcccaccatggctctaagtggagtgcctggccctggggcactggcctgg
gcctgagtcctgtgtgactcagggctgtgtggccctggataggtctgctc
tcctctctggttctcagtgtctctgcccagaaatcgaacaagggaaaggt
tttttcccttgcttttcctgccgtgcccaggagtcagggccagctggaat
tcaacctgtagcccttcttgttctttctctgcgggggcttggggtttctc
ccctcaggatgctcccacagtgctctgggcacactcctccctgggttctt
taagctattatgccgtgactgctttaccaccacttagagaacctcctttt
ctcctgcaaactatccacacagggcacatgcaagggacagctgagactgt
ccaagtcacaggagtccccgctgctaggaggagggcaaagtctgtggaga
agttggaagtttataaaagaatgagttacccatgtacgcatcaaagcact
cttccgctagaggaaaacaaagtgacactgttcccacatcgcctggcttg
gctggaggccagcgttcctcctcacccttgcctctcgcagctaccttgcc
cttcactccacccccttagcagtaccctgaccagatactgcagaaaaaga
agggggttcagaaatgagcagggtcttgggcaggtggcat
gaattcattaccttgtgtgacagggagaggggtggctctcactctcagga
acactgacagccaagggcatacctgggctgagctgaaacactccctgatg
gcaagctttctgaatctgtcagctgctcccaccaaacaacataaaggcca
tgaagcatcaaagactttggggtaagccacttccattttcagacgcccaa
gtgaaccgagctccacacatcatgtgaatggcctttcaaggccaaggctt
cctttctttcacccttccatcttcacctgtcccaactccatcctcatttc
cctcttccagaatccaaaggccttgcagactacattactgtggaataatc
agatgggaagggggaggcggagtcccctcccctcctgcctctttcccctg
ccctccactttcagcaatttacaggcaccaagaaaaacgataagacattt
attgagtcatctacagcagtttgacatccttaaaatcccagacaatgtgt
gagcacagcgttaatggaggcagcagtagcagtgaggtccgtggggttta
tctttattgtgggagattaaacccagaccggtccagctcccacaagggag
cctggaaccacatctggagtaccaagggctgaaccaaccccagccctgac
agatgctaagcctcagaagacagacagcagacaaaacacacatggctgag
tacagacacagcacaggacctggagttcaaggaagggagaaaaacgggca
tttggctcacttgaagagtgtcccataccactgaaggttcctaggcagac
agcacggagttgctcatagaagatttctcctcatccgtccctcgaagaaa
actgaacagtgatgacggtaaaccggggatttgaagtccacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55306915_55308012
seq2: B6Ng01-070K16.b_28_1117

seq1  GAATTCCAAATCAACCACTGTGAGTTTGATGCTATCCTGGTCAACATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATCAACCACTGTGAGTTTGATGCTATCCTGGTCAACATGAG  50

seq1  GCAGAGTCAGACAGCCTGGCTTAGAACCTGGGGTCTGATACCAACCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCAGACAGCCTGGCTTAGAACCTGGGGTCTGATACCAACCATTT  100

seq1  GATCTTCAATGATCACTGTGGCCTCAGTTTCTCCATCTACAGAATGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCAATGATCACTGTGGCCTCAGTTTCTCCATCTACAGAATGGGTC  150

seq1  ATTGTGGACTTAGACTCTGGCACCACAGAGCTCTGGCTCACCTTTCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGACTTAGACTCTGGCACCACAGAGCTCTGGCTCACCTTTCTTAG  200

seq1  TTCCCCCCATCTGCAGCTGCTGTTCTCTTCCACCTATACATTAAAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCATCTGCAGCTGCTGTTCTCTTCCACCTATACATTAAAGGCTG  250

seq1  GATAAACCCCAAGTGGGGTTGAGTCACCATTTCCCCAGGCAACTATTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCCCAAGTGGGGTTGAGTCACCATTTCCCCAGGCAACTATTTTC  300

seq1  CCCAAGTACAGGGGGCGACAATGCAGAGTGGAGAAAGAAAAGAAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTACAGGGGGCGACAATGCAGAGTGGAGAAAGAAAAGAAACAGAA  350

seq1  CTAAAGGAGAAAGTGGGAAGGGCTTGGCCTGGAGGTGCCTCACTTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGAAAGTGGGAAGGGCTTGGCCTGGAGGTGCCTCACTTTGTGG  400

seq1  ATCCCACCATGGCTCTAAGTGGAGTGCCTGGCCCTGGGGCACTGGCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCATGGCTCTAAGTGGAGTGCCTGGCCCTGGGGCACTGGCCTGG  450

seq1  GCCTGAGTCCTGTGTGACTCAGGGCTGTGTGGCCCTGGATAGGTCTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTCCTGTGTGACTCAGGGCTGTGTGGCCCTGGATAGGTCTGCTC  500

seq1  TCCTCTCTGGTTCTCAGTGTCTCTGCCCAGAAATCGAACAAGGGAAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTGGTTCTCAGTGTCTCTGCCCAGAAATCGAACAAGGGAAAGGT  550

seq1  TTTTTCCCTTGCTTTTCCTGCCGTGCCCAGGAGTCAGGGCCAGCTGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTTGCTTTTCCTGCCGTGCCCAGGAGTCAGGGCCAGCTGGAAT  600

seq1  TCAACCTGTAGCCCTTCTTGTTCTTTCTCTGCGGGGGCTTGGGGTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTGTAGCCCTTCTTGTTCTTTCTCTGCGGGGGCTTGGGGTTTCTC  650

seq1  CCCTCAGGATGCTCCCACAGTGCTCTGGGCACACTCCTCCCTGGGTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGATGCTCCCACAGTGCTCTGGGCACACTCCTCCCTGGGTTCTT  700

seq1  TAAGCTATTATGCCGTGACTGCTTTACCACCACTTAGAGAACCTCCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTATTATGCCGTGACTGCTTTACCACCACTTAGAGAACCTCCTTTT  750

seq1  CTCCTGCAAACTATCCACACAGGGCACATGCAAGGGACAGCTGAGACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCAAACTATCCACACAGGGCACATGCAAGGGACAGCTGAGACTGT  800

seq1  CCAAGTCACAGGAGTCCCCGCTGCTAGGAGGAGGGCAAAGTCTGTGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCACAGGAGTCCCCGCTGCTAGGAGGAGGGCAAAGTCTGTGGAGA  850

seq1  AGTTGGAAGTTTATAAAAGAATGAGTTACCCATGTACGCATCAAAGCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAAGTTTATAAAAGAATGAGTTACCCATGTACGCATCAAAGCACT  900

seq1  CTTCCGCTAGAGGAAAACAAAGTGACACTGTTCCCACATCGCCTGGCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCTAGAGGAAAACAAAGTGACACTGTTCCCACATCGCCTGGCTTG  950

seq1  GCTGGAGGCCAGCGTTCCTCCTCACCCTTGCCTCTCGCAGCTACCTTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGCCAGCGTTCCTCCTCACCCTTGCCTCTCGCAGCTACCTTGCC  1000

seq1  CTTCACCTCCACCCCCTTAGCAGTTACCCTGACCAGATACTGGCAGAAAA  1050
      ||||| ||||||||||||||||| ||||||||||||||||| ||||||||
seq2  CTTCA-CTCCACCCCCTTAGCAG-TACCCTGACCAGATACT-GCAGAAAA  1047

seq1  GGAAGGGGGGTTCCAGGAAATGAAGCAGGGGTCTGGGCAGGGTGGCAT  1098
       ||| ||||||||   |||||| |||||||   |||||| ||||||||
seq2  AGAA-GGGGGTTC--AGAAATG-AGCAGGGTCTTGGGCA-GGTGGCAT  1090

seq1: chr6_55450981_55451876
seq2: B6Ng01-070K16.g_70_962 (reverse)

seq1  TGGTGGACTTCAAATCCCAGCTTTACCGTCATCACTGTTCAGTTTTCTTC  50
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  TGGTGGACTTCAAATCCCCGGTTTACCGTCATCACTGTTCAGTTTTCTTC  50

seq1  GAAGGTACGGATGAGGAGAAATCTTCTATGAGCAACTCCGTGCTGTCTGC  100
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AGGGACGGATGAGGAGAAATCTTCTATGAGCAACTCCGTGCTGTCTGC  99

seq1  CTAGGAATCCTTCAGTGGTATGGGACACTCCTCAAGTGAGCCAAATGCCC  150
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  CTAGGAA-CCTTCAGTGGTATGGGACACTCTTCAAGTGAGCCAAATGCCC  148

seq1  GTTCTTTCTCCCTTCCTTGAACTCCAGGTCCTGTGCTGTGTCTGTACTCA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTT-TTTCTCCCTTCCTTGAACTCCAGGTCCTGTGCTGTGTCTGTACTCA  197

seq1  GCCATGTGTGTTTTGTCTGCTGTCTGTCTTCTGAGGCTTAGCATCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGTGTTTTGTCTGCTGTCTGTCTTCTGAGGCTTAGCATCTGTCA  247

seq1  GGGCTGGGGTTGGTTCAGCCCTTGGTACTCCAGATGTGGTTCCAGGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGTTGGTTCAGCCCTTGGTACTCCAGATGTGGTTCCAGGCTCC  297

seq1  CTTGTGGGAGCTGGACCGGTCTGGGTTTAATCTCCCACAATAAAGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGAGCTGGACCGGTCTGGGTTTAATCTCCCACAATAAAGATAAA  347

seq1  CCCCACGGACCTCACTGCTACTGCTGCCTCCATTAACGCTGTGCTCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGGACCTCACTGCTACTGCTGCCTCCATTAACGCTGTGCTCACAC  397

seq1  ATTGTCTGGGATTTTAAGGATGTCAAACTGCTGTAGATGACTCAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGGGATTTTAAGGATGTCAAACTGCTGTAGATGACTCAATAAAT  447

seq1  GTCTTATCGTTTTTCTTGGTGCCTGTAAATTGCTGAAAGTGGAGGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATCGTTTTTCTTGGTGCCTGTAAATTGCTGAAAGTGGAGGGCAGG  497

seq1  GGAAAGAGGCAGGAGGGGAGGGGACTCCGCCTCCCCCTTCCCATCTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGGCAGGAGGGGAGGGGACTCCGCCTCCCCCTTCCCATCTGATT  547

seq1  ATTCCACAGTAATGTAGTCTGCAAGGCCTTTGGATTCTGGAAGAGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAGTAATGTAGTCTGCAAGGCCTTTGGATTCTGGAAGAGGGAAA  597

seq1  TGAGGATGGAGTTGGGACAGGTGAAGATGGAAGGGTGAAAGAAAGGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGGAGTTGGGACAGGTGAAGATGGAAGGGTGAAAGAAAGGAAGC  647

seq1  CTTGGCCTTGAAAGGCCATTCACATGATGTGTGGAGCTCGGTTCACTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTTGAAAGGCCATTCACATGATGTGTGGAGCTCGGTTCACTTGG  697

seq1  GCGTCTGAAAATGGAAGTGGCTTACCCCAAAGTCTTTGATGCTTCATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGAAAATGGAAGTGGCTTACCCCAAAGTCTTTGATGCTTCATGGC  747

seq1  CTTTATGTTGTTTGGTGGGAGCAGCTGACAGATTCAGAAAGCTTGCCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTGTTTGGTGGGAGCAGCTGACAGATTCAGAAAGCTTGCCATC  797

seq1  AGGGAGTGTTTCAGCTCAGCCCAGGTATGCCCTTGGCTGTCAGTGTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGTTTCAGCTCAGCCCAGGTATGCCCTTGGCTGTCAGTGTTCCT  847

seq1  GAGAGTGAGAGCCACCCCTCTCCCTGTCACACAAGGTAATGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGAGCCACCCCTCTCCCTGTCACACAAGGTAATGAATTC  893