BAC Information

Click to search

BAC

Clone NameB6Ng01-071E20
Chromosome6 (Build37)
Map Location 82,806,057 - 83,018,144
singlet/doubletdoublet
Overlap geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1
Upstream gene1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2
Downstream geneTlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071E20.bB6Ng01-071E20.g
ACCDH889039DH889040
length1,0961,091
definitionDH889039|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E20, 5' end.DH889040|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,806,057 - 82,807,159)(83,017,049 - 83,018,144)
sequence
gaattcagatgggagggaagggattgaacctagagtctgttttctgaacc
ttcaactgtacaaccaaggtctctcccaagcccacacagtctttgtccga
tgtgagcatggtgtcctactacgcagcagtgatacctgggagctgccacc
gttgggaaaagctctgctttctcctgcagatgcagcccacacctgggcac
atagccacgggcagagggtgggggacttgagggcctactaggtcagcctc
tgtggcagtccacacgctgcatacctgtgtgtggacgcccgagctcagct
gccgccctgtagggaggactgccacagctcagctgccgccctgtagggag
gactccctaactgattcttgttcacaggggttggaatttcaagaatggaa
actagtaaaatcccttccccaccctgcagtccccaggccagaactggaga
gaggctgataagctgagccgcagcccgaaggaagctagaagcctgatctg
caggttaatggacaactaccagtacttaaacatgcatctctccctcatcc
gtgctccccacccacaggactgtaccctgattctttgcccatctcctttt
tctcctggcccctctactcattgctcctcactaccacacacacacacaca
cacacacacacacacacactggcatgtatctgagagtcctgcatgatttc
atctcaggcaggcccttcacaaatgagaaaagacagacacaccaggaagc
ctcacacagtgtctcagggcatgtggggcgagtgggtgctggttgtctgg
gttcccatcacagtcccatacattccctgcctccgtgagacactaagtcg
ttttacctccctgtgcctcagtttctttgtgtgtgaatgagggtggggat
agctgctgaatgtgtgagctggttgtttaagtctgtaaaaggctgcgtag
gtctaaaataaataaaataacacacaaacacttcaaatagtggctcagta
tgaaccagggcttccacatagagattctccttcataaccttatctggact
acaacacaatctgtggaacccccttccaaccctcttaaaaactcat
gaattcatgggcccagtgttagagtgagcaagagacatgctttgggacta
gcaaacctaagaagaaccaaagatgaccttaagactggagatgtgtaggc
caggaaggggaaactgggggcaagattaacagtaggcaaaactaatgtta
gatttagagagagagaaaaaaatgctaatgcctgcctttgggggaatctc
catgacatcacagggggtggagacagatgaaattttgggtctaagatctc
ctggtaaaggcgggaaggcacagggaactctggggagttacatggattga
gcctttctttccacagtattctacaaacacatttatgatgtgcaggatgg
tggtggattcagaaattcgagtagactaagggcagaagggaaagagttag
ggagaagtgaaggatggcggctttaagttggaatgttcttaggagatggc
acttgcagtaatcctgacaatctgagtttgagccctaggggcaagtttgt
ggaagaaaactgatttctacaaactatcctctgaccactgcacatgtgtt
gtgggtgtacacacacacacacaaactataatgaaaaattagagagactg
cagactgtaggtgagtcagagggcgcaggcttttggttaagtggaggatg
gttacaaagctctctggcttaacagggagatttcgcctcactccactgtc
cccctcttgttcctggcagaggctagaacactgtgacgggacacagacct
gtggtagccaggtcacggatgctctgtgctagggacagatatagcagcac
agaggcttgggcggaggcaggcaggaggctgcacctgcagaagtcggcct
ttccttttgtgtcacctctgactcatggatgttgtatatggcactacaga
actaaaaatcaaacttggcatcatagaaaatcattttttaaaaaaagatt
tatttagatgggcatggtggcacatgcctttaatcccagcacttgggagc
agaggcaggtgaatttctgagttcgaggctaacttgtctacagagtgagt
tccagacagccaggctacacagagaatccctgttctcgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_82806057_82807159
seq2: B6Ng01-071E20.b_47_1142

seq1  GAATTCAGATGGGAGGGAAGGGATTGAACCTAGAGTCTGTTTTCTGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGGGAGGGAAGGGATTGAACCTAGAGTCTGTTTTCTGAACC  50

seq1  TTCAACTGTACAACCAAGGTCTCTCCCAAGCCCACACAGTCTTTGTCCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGTACAACCAAGGTCTCTCCCAAGCCCACACAGTCTTTGTCCGA  100

seq1  TGTGAGCATGGTGTCCTACTACGCAGCAGTGATACCTGGGAGCTGCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCATGGTGTCCTACTACGCAGCAGTGATACCTGGGAGCTGCCACC  150

seq1  GTTGGGAAAAGCTCTGCTTTCTCCTGCAGATGCAGCCCACACCTGGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAAAAGCTCTGCTTTCTCCTGCAGATGCAGCCCACACCTGGGCAC  200

seq1  ATAGCCACGGGCAGAGGGTGGGGGACTTGAGGGCCTACTAGGTCAGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCACGGGCAGAGGGTGGGGGACTTGAGGGCCTACTAGGTCAGCCTC  250

seq1  TGTGGCAGTCCACACGCTGCATACCTGTGTGTGGACGCCCGAGCTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGTCCACACGCTGCATACCTGTGTGTGGACGCCCGAGCTCAGCT  300

seq1  GCCGCCCTGTAGGGAGGACTGCCACAGCTCAGCTGCCGCCCTGTAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCCTGTAGGGAGGACTGCCACAGCTCAGCTGCCGCCCTGTAGGGAG  350

seq1  GACTCCCTAACTGATTCTTGTTCACAGGGGTTGGAATTTCAAGAATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTAACTGATTCTTGTTCACAGGGGTTGGAATTTCAAGAATGGAA  400

seq1  ACTAGTAAAATCCCTTCCCCACCCTGCAGTCCCCAGGCCAGAACTGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAAAATCCCTTCCCCACCCTGCAGTCCCCAGGCCAGAACTGGAGA  450

seq1  GAGGCTGATAAGCTGAGCCGCAGCCCGAAGGAAGCTAGAAGCCTGATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGATAAGCTGAGCCGCAGCCCGAAGGAAGCTAGAAGCCTGATCTG  500

seq1  CAGGTTAATGGACAACTACCAGTACTTAAACATGCATCTCTCCCTCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAATGGACAACTACCAGTACTTAAACATGCATCTCTCCCTCATCC  550

seq1  GTGCTCCCCACCCACAGGACTGTACCCTGATTCTTTGCCCATCTCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCCCACCCACAGGACTGTACCCTGATTCTTTGCCCATCTCCTTTT  600

seq1  TCTCCTGGCCCCTCTACTCATTGCTCCTCACTACCACACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCCCCTCTACTCATTGCTCCTCACTACCACACACACACACACA  650

seq1  CACACACACACACACACACTGGCATGTATCTGAGAGTCCTGCATGATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACTGGCATGTATCTGAGAGTCCTGCATGATTTC  700

seq1  ATCTCAGGCAGGCCCTTCACAAATGAGAAAAGACAGACACACCAGGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGCAGGCCCTTCACAAATGAGAAAAGACAGACACACCAGGAAGC  750

seq1  CTCACACAGTGTCTCAGGGCATGTGGGGCGAGTGGGTGCTGGTTGTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGTGTCTCAGGGCATGTGGGGCGAGTGGGTGCTGGTTGTCTGG  800

seq1  GTTCCCATCACAGTCCCATACATTCCCTGCCTCCGTGAGACACTAAGTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATCACAGTCCCATACATTCCCTGCCTCCGTGAGACACTAAGTCG  850

seq1  TTTTACCTCCCTGTGCCTCAGTTTCTTTGTGTGTGAAATGAGGGTGGGGA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTACCTCCCTGTGCCTCAGTTTCTTTGTGTGTG-AATGAGGGTGGGGA  899

seq1  TAGCTGCTGAATGTGTGAGCTGGTTGTTTAAGTCTGTAAAAAGGCTGCGT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGCTGCTGAATGTGTGAGCTGGTTGTTTAAGTCTGT-AAAAGGCTGCGT  948

seq1  AGGTCTAAAATAAAATAAAATAACACACAAACACTTCAAATAGT-GCTCA  999
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AGGTCTAAAAT-AAATAAAATAACACACAAACACTTCAAATAGTGGCTCA  997

seq1  GTATGAACCAGGGCTTCCAACATAGAGGATTCTCCTTCATAACCTTATCT  1049
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  GTATGAACCAGGGCTTCC-ACATAGA-GATTCTCCTTCATAACCTTATCT  1045

seq1  GGAACTACAACCAACAATCTGTGGAACCCCC-TCACACCCTCTTAAATAA  1098
      || ||||||||  |||||||||||||||||| ||  ||||||||||| ||
seq2  GG-ACTACAAC--ACAATCTGTGGAACCCCCTTCCAACCCTCTTAAA-AA  1091

seq1  CTCAT  1103
      |||||
seq2  CTCAT  1096

seq1: chr6_83017049_83018144
seq2: B6Ng01-071E20.g_66_1156 (reverse)

seq1  TTACGAG-ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  49
      ||||||| |||||| |||||||||||| ||||||||| ||||||||||||
seq2  TTACGAGAACAGGGATTCTCTGTGTAG-CCTGGCTGT-CTGGAACTCACT  48

seq1  CTGTAGACCAGGTTAGCCTCGAACTCAGAAATTCACCTGCCTCTGCCTCC  99
      ||||||| || |||||||||||||||||||||||||||||||||| ||||
seq2  CTGTAGA-CAAGTTAGCCTCGAACTCAGAAATTCACCTGCCTCTG-CTCC  96

seq1  CAAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCATCTAAATAAATCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCATCTAAATAAATC-  145

seq1  TTTTTTTAAAAAATGATTTTTCTATGATGCCAAGTTTGATTTTTAGTTCT  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAAATGA-TTTTCTATGATGCCAAGTTTGATTTTTAGTTCT  194

seq1  GTAGTGCCATATACAACATCCATGAGTCAGAGGTGACACAAAAGGAAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCCATATACAACATCCATGAGTCAGAGGTGACACAAAAGGAAAGG  244

seq1  CCGACTTCTGCAGGTGCAGCCTCCTGCCTGCCTCCGCCCAAGCCTCTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTTCTGCAGGTGCAGCCTCCTGCCTGCCTCCGCCCAAGCCTCTGTG  294

seq1  CTGCTATATCTGTCCCTAGCACAGAGCATCCGTGACCTGGCTACCACAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATATCTGTCCCTAGCACAGAGCATCCGTGACCTGGCTACCACAGG  344

seq1  TCTGTGTCCCGTCACAGTGTTCTAGCCTCTGCCAGGAACAAGAGGGGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCCGTCACAGTGTTCTAGCCTCTGCCAGGAACAAGAGGGGGAC  394

seq1  AGTGGAGTGAGGCGAAATCTCCCTGTTAAGCCAGAGAGCTTTGTAACCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTGAGGCGAAATCTCCCTGTTAAGCCAGAGAGCTTTGTAACCAT  444

seq1  CCTCCACTTAACCAAAAGCCTGCGCCCTCTGACTCACCTACAGTCTGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACTTAACCAAAAGCCTGCGCCCTCTGACTCACCTACAGTCTGCAG  494

seq1  TCTCTCTAATTTTTCATTATAGTTTGTGTGTGTGTGTGTACACCCACAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAATTTTTCATTATAGTTTGTGTGTGTGTGTGTACACCCACAAC  544

seq1  ACATGTGCAGTGGTCAGAGGATAGTTTGTAGAAATCAGTTTTCTTCCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCAGTGGTCAGAGGATAGTTTGTAGAAATCAGTTTTCTTCCACA  594

seq1  AACTTGCCCCTAGGGCTCAAACTCAGATTGTCAGGATTACTGCAAGTGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCCCCTAGGGCTCAAACTCAGATTGTCAGGATTACTGCAAGTGCC  644

seq1  ATCTCCTAAGAACATTCCAACTTAAAGCCGCCATCCTTCACTTCTCCCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTAAGAACATTCCAACTTAAAGCCGCCATCCTTCACTTCTCCCTA  694

seq1  ACTCTTTCCCTTCTGCCCTTAGTCTACTCGAATTTCTGAATCCACCACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCCCTTCTGCCCTTAGTCTACTCGAATTTCTGAATCCACCACCA  744

seq1  TCCTGCACATCATAAATGTGTTTGTAGAATACTGTGGAAAGAAAGGCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACATCATAAATGTGTTTGTAGAATACTGTGGAAAGAAAGGCTCA  794

seq1  ATCCATGTAACTCCCCAGAGTTCCCTGTGCCTTCCCGCCTTTACCAGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTAACTCCCCAGAGTTCCCTGTGCCTTCCCGCCTTTACCAGGAG  844

seq1  ATCTTAGACCCAAAATTTCATCTGTCTCCACCCCCTGTGATGTCATGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGACCCAAAATTTCATCTGTCTCCACCCCCTGTGATGTCATGGAG  894

seq1  ATTCCCCCAAAGGCAGGCATTAGCATTTTTTTCTCTCTCTCTAAATCTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCCAAAGGCAGGCATTAGCATTTTTTTCTCTCTCTCTAAATCTAA  944

seq1  CATTAGTTTTGCCTACTGTTAATCTTGCCCCCAGTTTCCCCTTCCTGGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTTTTGCCTACTGTTAATCTTGCCCCCAGTTTCCCCTTCCTGGCC  994

seq1  TACACATCTCCAGTCTTAAGGTCATCTTTGGTTCTTCTTAGGTTTGCTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCTCCAGTCTTAAGGTCATCTTTGGTTCTTCTTAGGTTTGCTAG  1044

seq1  TCCCAAAGCATGTCTCTTGCTCACTCTAACACTGGGCCCATGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGCATGTCTCTTGCTCACTCTAACACTGGGCCCATGAATTC  1091