BAC Information

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BAC

Clone NameB6Ng01-071G02
Chromosome6 (Build37)
Map Location 121,208,026 - 121,343,997
singlet/doubletdoublet
Overlap geneUsp18, Slc6a13, Slc6a12, Iqsec3
Upstream geneB4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8
Downstream geneLOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G02.bB6Ng01-071G02.g
ACCDH889097DH889098
length1,097975
definitionDH889097|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G02, 5' end.DH889098|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,342,899 - 121,343,997)(121,208,026 - 121,208,726)
sequence
gaattccatgtcagccagagtggcatgtccttgtctgccgcagttgggag
catctgtggtactttaggtggtatcatactgtgctctcacggtgggctgt
gagctcaccctgcttctgggtccttctcagggaataccagagctgagatg
aaggtggggcaggtcctacgagttcaatgtgactgactcataaccatgtg
agaagtgacttgccattgtggcagatcgagggctttcctgtggctcagtc
cattcttttcccttcccactgggactttgcagccagaaaatgttaggatt
tctattatcaaacactgatgctgtagttaagagcacttgctgctcttgta
gaggacctgggttcagttcccagcacccccatgtcagctcataactgctt
gtaactccagctccagggcaatctgatgccctcttctggcctcttatgga
attgcataaatatgttgcacatatgtacatgcaaacaaaatactcataca
cataaaaaaaaaaaaccactgatgtctcaagggatatcacagggaggcaa
gttgagggtgggtgatgctgcatctatatgtaatcctagccctttgcccc
ttactgcccccacacagagttatcctgatatccttggggggatgaaatca
ccttcccttgcaaggctggtccctggggcttggttgtggctagactcaca
tttcaaaagctcccaatgggctgagcttcctcctactctttgctttggct
cagcccctggcttcccccattttaagcatcactcatagagctgataaaga
atgcagattcccaggccagcctccgtatgttctaactcactggatctgga
caaggtccagagagctgcattttaactaataccttctccatcacaactca
ggttctcagaacagctggaagattctgaattagaggcattctggctccat
ggcagtcttcccactcctgtcttgggatgggagccatgtttcacctagct
gcttctctgacagggacagtttagaccctcggctcattactggagtctgg
agtcacagcactggagtcaggggagctggtgagctagcaggctgcat
gaattcctcaggcttttgtttttcttggaaaacctttgtcttcatttctg
agagatagctttgctgggtataatatctgtagttggtatgttgttgttgc
tgctgctgcttcaggactttgtatatcccatcgcactcttgccttaaaga
acatcttttctaactaaacctgttaggagatttttgagctccctggactt
ggatatctatatttgcaatgacttggaaaattgtcattgattaatttggt
gggttatctgcgccctttctttcccgtctcctcttatagcacctgtatta
tgaatgttttcctagttagttgtgtgcaatatgtcccatagactttgctt
ttaatttttcttaatttctttacttttcatttttctaatttggttgtttc
aaaagacttatgttcatgcttagaatttttttttctgcctgatcaatact
gttgagggtctctatggtgttttcttttttcttaacttattaaattcatt
agtgtcatgatttctctttattatctttatgtatgatgaattctcactta
cataatggtttctctaacttaattgatgttttaattctctagcatctcat
taaacttccttgtaataatttgtttgaattctctgttatactatatatat
atatatatatatatatatatatatatatatatattagtatagagtccttt
gaggaccactgctagaaaggtattgtgctccttttggagatactagggtg
catagtttttcatgattttataaaaaagatcctgatttttgaaactgttt
aatttttttttgtagtgatcatgcgtattttgcctgcgtggatttttgtg
taccatgtaccaagtaaggtggactcttggaggtagaagaggttgctgga
tcccctaggactagatttcaaacagatgttagacatctgggagtgctggg
aatcgtatctaggttctctggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121342899_121343997
seq2: B6Ng01-071G02.b_45_1141 (reverse)

seq1  ATGCAGCCTGCTAGCTCACCAGCT-CACTGACTCAGGTGCTGTGACTCAG  49
      |||||||||||||||||||||||| | |||||||  ||||||||||||  
seq2  ATGCAGCCTGCTAGCTCACCAGCTCCCCTGACTCCAGTGCTGTGACTCCA  50

seq1  GACTCCAGTAATGAGCCGAGGGTCTAAACTGTCCTTGTTCAGAGGAAGCA  99
      |||||||||||||||||||||||||||||||||| || ||||| ||||||
seq2  GACTCCAGTAATGAGCCGAGGGTCTAAACTGTCCCTG-TCAGA-GAAGCA  98

seq1  GCTAGGTGAAACATGGCTCCCATCCCAAGACAGGGGTGGGAAGACTGCCA  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTAGGTGAAACATGGCTCCCATCCCAAGACAGGAGTGGGAAGACTGCCA  148

seq1  TGGAGCCAGAATGCCTCTAATTCAGAATCTTCCAGCTGTTCTGAGAACCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGAGCCAGAATGCCTCTAATTCAGAATCTTCCAGCTGTTCTGAGAA-CC  197

seq1  TGAGTTGTGATGGAGAAGGTATTAGTTAAAATGCAGCTCTCTGGACCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTGATGGAGAAGGTATTAGTTAAAATGCAGCTCTCTGGACCTTG  247

seq1  TCCAGATCCAGTGAGTTAGAACATACGGAGGCTGGCCTGGGAATCTGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCCAGTGAGTTAGAACATACGGAGGCTGGCCTGGGAATCTGCAT  297

seq1  TCTTTATCAGCTCTATGAGTGATGCTTAAAATGGGGGAAGCCAGGGGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCAGCTCTATGAGTGATGCTTAAAATGGGGGAAGCCAGGGGCTG  347

seq1  AGCCAAAGCAAAGAGTAGGAGGAAGCTCAGCCCATTGGGAGCTTTTGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCAAAGAGTAGGAGGAAGCTCAGCCCATTGGGAGCTTTTGAAA  397

seq1  TGTGAGTCTAGCCACAACCAAGCCCCAGGGACCAGCCTTGCAAGGGAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCTAGCCACAACCAAGCCCCAGGGACCAGCCTTGCAAGGGAAGG  447

seq1  TGATTTCATCCCCCCAAGGATATCAGGATAACTCTGTGTGGGGGCAGTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATCCCCCCAAGGATATCAGGATAACTCTGTGTGGGGGCAGTAA  497

seq1  GGGGCAAAGGGCTAGGATTACATATAGATGCAGCATCACCCACCCTCAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAGGGCTAGGATTACATATAGATGCAGCATCACCCACCCTCAAC  547

seq1  TTGCCTCCCTGTGATATCCCTTGAGACATCAGTGGTTTTTTTTTTTTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCCCTGTGATATCCCTTGAGACATCAGTGGTTTTTTTTTTTTATG  597

seq1  TGTATGAGTATTTTGTTTGCATGTACATATGTGCAACATATTTATGCAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGTATTTTGTTTGCATGTACATATGTGCAACATATTTATGCAAT  647

seq1  TCCATAAGAGGCCAGAAGAGGGCATCAGATTGCCCTGGAGCTGGAGTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGAGGCCAGAAGAGGGCATCAGATTGCCCTGGAGCTGGAGTTAC  697

seq1  AAGCAGTTATGAGCTGACATGGGGGTGCTGGGAACTGAACCCAGGTCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTATGAGCTGACATGGGGGTGCTGGGAACTGAACCCAGGTCCTC  747

seq1  TACAAGAGCAGCAAGTGCTCTTAACTACAGCATCAGTGTTTGATAATAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGCAGCAAGTGCTCTTAACTACAGCATCAGTGTTTGATAATAGA  797

seq1  AATCCTAACATTTTCTGGCTGCAAAGTCCCAGTGGGAAGGGAAAAGAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAACATTTTCTGGCTGCAAAGTCCCAGTGGGAAGGGAAAAGAATG  847

seq1  GACTGAGCCACAGGAAAGCCCTCGATCTGCCACAATGGCAAGTCACTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGCCACAGGAAAGCCCTCGATCTGCCACAATGGCAAGTCACTTCT  897

seq1  CACATGGTTATGAGTCAGTCACATTGAACTCGTAGGACCTGCCCCACCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTTATGAGTCAGTCACATTGAACTCGTAGGACCTGCCCCACCTT  947

seq1  CATCTCAGCTCTGGTATTCCCTGAGAAGGACCCAGAAGCAGGGTGAGCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGCTCTGGTATTCCCTGAGAAGGACCCAGAAGCAGGGTGAGCTC  997

seq1  ACAGCCCACCGTGAGAGCACAGTATGATACCACCTAAAGTACCACAGATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCACCGTGAGAGCACAGTATGATACCACCTAAAGTACCACAGATG  1047

seq1  CTCCCAACTGCGGCAGACAAGGACATGCCACTCTGGCTGACATGGAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACTGCGGCAGACAAGGACATGCCACTCTGGCTGACATGGAATTC  1097

seq1: chr6_121208026_121208726
seq2: B6Ng01-071G02.g_343_1040

seq1  CTCCTCTTATAGCACCTGTATTATGAATGTTTTCCTAGTTAGTTGTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTATAGCACCTGTATTATGAATGTTTTCCTAGTTAGTTGTGTGC  50

seq1  AATATGTCCCATAGACTTTGCTTTTAATTTTTCTTAATTTCTTTACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCCCATAGACTTTGCTTTTAATTTTTCTTAATTTCTTTACTTTT  100

seq1  CATTTTTCTAATTTGGTTGTTTCAAAAGACTTATGTTCATGCTTAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTAATTTGGTTGTTTCAAAAGACTTATGTTCATGCTTAGAATT  150

seq1  TTTTTTTCTGCCTGATCAATACTGTTGAGGGTCTCTATGGTGTTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGCCTGATCAATACTGTTGAGGGTCTCTATGGTGTTTTCTTT  200

seq1  TTTCTTAACTTATTAAATTCATTAGTGTCATGATTTCTCTTTATTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAACTTATTAAATTCATTAGTGTCATGATTTCTCTTTATTATCTT  250

seq1  TATGTATGATGAATTCTCACTTACATAATGGTTTCTCTAACTTAATTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGATGAATTCTCACTTACATAATGGTTTCTCTAACTTAATTGAT  300

seq1  GTTTTAATTCTCTAGCATCTCATTAAACTTCCTTGTAATAATTTGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATTCTCTAGCATCTCATTAAACTTCCTTGTAATAATTTGTTTGA  350

seq1  ATTCTCTGTTATACTATATATATATATATATATATATATATATATATATA  400
      ||||||||||||||    ||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTTATAC----TATATATATATATATATATATATATATATATA  396

seq1  TATATATATATTAGTTTTCTTTCCTTTGAGGACCACTGCTAGAAAGTTAT  450
      ||||||||||||||| |    ||||||||||||||||||||||||| |||
seq2  TATATATATATTAGTATAGAGTCCTTTGAGGACCACTGCTAGAAAGGTAT  446

seq1  TGTGCTCC-TTTGGAGATACTAGGGTGCATAGTTTTTCATGATTT--TTA  497
      |||||||| ||||||||||||||||||||||||||||||||||||  | |
seq2  TGTGCTCCTTTTGGAGATACTAGGGTGCATAGTTTTTCATGATTTTATAA  496

seq1  AAAAGATCCTGATTTTTG-AACTG-TTAATTTTTTTTTGTAGTGATCATG  545
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  AAAAGATCCTGATTTTTGAAACTGTTTAATTTTTTTTTGTAGTGATCATG  546

seq1  CGTATTTTGCCTGCGTGTATTTTTGTGTACCATGTACCAAGTTAGGTGGT  595
      ||||||||||||||||| |||||||||||||||||||||||| |||||| 
seq2  CGTATTTTGCCTGCGTGGATTTTTGTGTACCATGTACCAAGTAAGGTGG-  595

seq1  ACTCTTGGAGGCTAGAAGAGGTTGCTGGATCCCCTAGGACTAGAGTTACA  645
      ||||||||||| |||||||||||||||||||||||||||||||| || ||
seq2  ACTCTTGGAGG-TAGAAGAGGTTGCTGGATCCCCTAGGACTAGA-TTTCA  643

seq1  GACAGATGTTAGACATCGTGTGAGTGCTGGGAATCGAATCCAGGTCCTCT  695
       |||||||||||||||| || ||||||||||||||| ||| |||| ||||
seq2  AACAGATGTTAGACATC-TGGGAGTGCTGGGAATCGTATCTAGGTTCTCT  692

seq1  GGAAGA  701
      ||||||
seq2  GGAAGA  698