BAC Information

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BAC

Clone NameB6Ng01-071G20
Chromosome6 (Build37)
Map Location 120,135,130 - 120,312,289
singlet/doubletdoublet
Overlap geneNinj2, B4galnt3, Ccdc77
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236
Downstream geneJarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G20.bB6Ng01-071G20.g
ACCDH889131DH889132
length3951,073
definitionDH889131|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G20, 5' end.DH889132|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,311,889 - 120,312,289)(120,135,130 - 120,136,203)
sequence
atctcaagtaaactgaggaaaatacattccaagcaccacatattcatctg
taagttaccagtgttagagtagaatgaaattagtatctaagtctggtaag
tatttggcaagactgtgaattacggcctctgatgtatttcattttacttt
tgagccagggtctctctgtttcatccaggctattattgtactggatgcta
atgatcttcctgtatcagcctccccagtatctggaactgcaagtatatac
agtttattgtttaaagcctcacatcagagtgacaggagtgggcaaatctc
attgagtgaaaaatgttaaaaaaaaaagaaaacccacagaatttctaagg
aaatggcttttaattcccacggtggggtagtggggtagtggggta
gaattcaaggccacctaggtaacactcctggtgaatgcacccagcacttg
caaggtggaggaggcaggaggattaggagttcaaggtcatcctcagctac
tgaaaggccacatgagacagtctccaaaaaaaaaaaaaaaagcgcagctc
taggactgggctggggatggagctcagttcagagggtgggaggggttgct
tcctcctaagaacaagtttcgtttttttttgttgttgttgttgttgtttt
tgttttggcttttcgagacagggtttctctgtatagccctggctgtcctg
gaactcactttgtagaccaggctggcctaggactcagaaatccgcccgcc
tctgcctcccaagtgctgggattaaaggcatgcgccacgcccggtttacg
cacaaatttttatcttggtccccacgactggagaaagacagagaatctgc
cagtttgccagggcctgatgctgggctgtttccggtacgatcccttgacc
ttagttaagaagctattttagctattttgttggggggtttgctcaatcca
gagtaggcctacactgacttctggtgagaaggaaatctttcagaggaagg
tccttccagacatcaaaagcagagaagcagcaaggctttgtgggggctcc
aatgtcacccagcagagatagggagagccccctccagtcagacctccctg
gctccacagagaactctgccattgctggcttgctcgctccccctcggttt
ccttcagcttttgtctgctatcagaggcactgctgagtgcaggctgggct
cagtgactgtgtcctcccatctcacagcggcactggaagcctgagaactg
aagagagagcggtgcacccgccatgtgaggtctccagctgcaccagctgg
tcgaggaaggaatgagggctgggtgagagcaaagtatctgggctgggtca
gggtccagggtgggcacatcctgttactcatgtgggatagtctatctaat
ggtgccctctccaggactgtcgtcacccctacactgtgaactctgtgctc
cctgaatccctcttgtaattccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120311889_120312289
seq2: B6Ng01-071G20.b_47_447 (reverse)

seq1  TACCCCACTACCCCACTACCCCACCGTGGGAATTAAAAGCCATTTCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCACTACCCCACTACCCCACCGTGGGAATTAAAAGCCATTTCCTTA  50

seq1  GAAATTCTGTGGGTTTTCTTTTTTTTTTAACATTTTTCACTCAATGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTGTGGGTTTTCTTTTTTTTTTAACATTTTTCACTCAATGAGAT  100

seq1  TTGCCCACTCCTGTCACTCTGATGTGAGGCTTTAAACAATAAACTGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACTCCTGTCACTCTGATGTGAGGCTTTAAACAATAAACTGTATA  150

seq1  TACTTGCAGTTCCAGATACTGGGGAGGCTGATACAGGAAGATCATTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCAGTTCCAGATACTGGGGAGGCTGATACAGGAAGATCATTAGCA  200

seq1  TCCAGTACAATAATAGCCTGGATGAAACAGAGAGACCCTGGCTCAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACAATAATAGCCTGGATGAAACAGAGAGACCCTGGCTCAAAAGT  250

seq1  AAAATGAAATACATCAGAGGCCGTAATTCACAGTCTTGCCAAATACTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAATACATCAGAGGCCGTAATTCACAGTCTTGCCAAATACTTAC  300

seq1  CAGACTTAGATACTAATTTCATTCTACTCTAACACTGGTAACTTACAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTAGATACTAATTTCATTCTACTCTAACACTGGTAACTTACAGAT  350

seq1  GAATATGTGGTGCTTGGAATGTATTTTCCTCAGTTTACTTGAGATGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTGGTGCTTGGAATGTATTTTCCTCAGTTTACTTGAGATGAATT  400

seq1  C  401
      |
seq2  C  401

seq1: chr6_120135130_120136203
seq2: B6Ng01-071G20.g_67_1139

seq1  GAATTCAAGGCCACCTAGGTAACACTCCTGGTGAATGCACCCAGCACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCACCTAGGTAACACTCCTGGTGAATGCACCCAGCACTTG  50

seq1  CAAGGTGGAGGAGGCAGGAGGATTAGGAGTTCAAGGTCATCCTCAGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGAGGAGGCAGGAGGATTAGGAGTTCAAGGTCATCCTCAGCTAC  100

seq1  TGAAAGGCCACATGAGACAGTCTCCAAAAAAAAAAAAAAAAGCGCAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCCACATGAGACAGTCTCCAAAAAAAAAAAAAAAAGCGCAGCTC  150

seq1  TAGGACTGGGCTGGGGATGGAGCTCAGTTCAGAGGGTGGGAGGGGTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGGGCTGGGGATGGAGCTCAGTTCAGAGGGTGGGAGGGGTTGCT  200

seq1  TCCTCCTAAGAACAAGTTTCGTTTTTTTTTGTTGTTGTTGTTGTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTAAGAACAAGTTTCGTTTTTTTTTGTTGTTGTTGTTGTTGTTTT  250

seq1  TGTTTTGGCTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGCTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  300

seq1  GAACTCACTTTGTAGACCAGGCTGGCCTAGGACTCAGAAATCCGCCCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTTTGTAGACCAGGCTGGCCTAGGACTCAGAAATCCGCCCGCC  350

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACGCCCGGTTTACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACGCCCGGTTTACG  400

seq1  CACAAATTTTTATCTTGGTCCCCACGACTGGAGAAAGACAGAGAATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTTTTATCTTGGTCCCCACGACTGGAGAAAGACAGAGAATCTGC  450

seq1  CAGTTTGCCAGGGCCTGATGCTGGGCTGTTTCCGGTACGATCCCTTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCCAGGGCCTGATGCTGGGCTGTTTCCGGTACGATCCCTTGACC  500

seq1  TTAGTTAAGAAGCTATTTTAGCTATTTTGTTGGGGGGTTTGCTCAATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAAGAAGCTATTTTAGCTATTTTGTTGGGGGGTTTGCTCAATCCA  550

seq1  GAGTAGGCCTACACTGACTTCTGGTGAGAAGGAAATCTTTCAGAGGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGCCTACACTGACTTCTGGTGAGAAGGAAATCTTTCAGAGGAAGG  600

seq1  TCCTTCCAGACATCAAAAGCAGAGAAGCAGCAAGGCTTTGTGGGGGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCAGACATCAAAAGCAGAGAAGCAGCAAGGCTTTGTGGGGGCTCC  650

seq1  AAGGTCACCCAGCAGAGATAGGGAGAGCCCCCTCCAGTCAGACCTCCCTG  700
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACCCAGCAGAGATAGGGAGAGCCCCCTCCAGTCAGACCTCCCTG  700

seq1  GCTCCACAGAGAACTCTGCCATTGCTGGCTTGCTCGCTCCCCCTCGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACAGAGAACTCTGCCATTGCTGGCTTGCTCGCTCCCCCTCGGTTT  750

seq1  CCTTCAGC-TTTGTCTGCTATCAGAGGCACTGCTGAGTGCAGGCTGGGCT  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCTTTTGTCTGCTATCAGAGGCACTGCTGAGTGCAGGCTGGGCT  800

seq1  CAGTGACTGTGTCCTCCCATCTCACAGCGGCACTGGAAGCCTGAGAACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGTGTCCTCCCATCTCACAGCGGCACTGGAAGCCTGAGAACTG  850

seq1  AAGAGAGAGCGGTGCACCCGCCATGTGAGGTCTCCAGCTGCACCAGCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGCGGTGCACCCGCCATGTGAGGTCTCCAGCTGCACCAGCTGG  900

seq1  GCGAGGAAGGAATGAGGGCTGGGTGAGAGCAAAGCACCTGGGCTGGGTCA  949
       ||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  TCGAGGAAGGAATGAGGGCTGGGTGAGAGCAAAGTATCTGGGCTGGGTCA  950

seq1  GGGTCCCAGGTGGGCACAGTCCTGCTGACTCATGCTGGCAAGTCAGTCAA  999
      ||||||  |||||||||| ||||| | |||||||  ||  ||||  || |
seq2  GGGTCCAGGGTGGGCACA-TCCTG-TTACTCATGTGGGATAGTCTATCTA  998

seq1  AGGGGGCCC-CT-CAGGACTGTCGTCACCCCAGCACTGGGGACTCTGTGC  1047
      | || |||| || ||||||||||||||||||  ||||| | |||||||||
seq2  ATGGTGCCCTCTCCAGGACTGTCGTCACCCCTACACTGTGAACTCTGTGC  1048

seq1  TCCCTGAATCCTCTCTTGTTTATTCCC  1074
      ||||||||||| |||||| | ||||||
seq2  TCCCTGAATCC-CTCTTG-TAATTCCC  1073