BAC Information

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BAC

Clone NameB6Ng01-071I09
Chromosome6 (Build37)
Map Location 32,503,915 - 32,611,191
singlet/doubletdoublet
Overlap genePlxna4
Upstream genePodxl, EG619959, LOC620104, 1700012A03Rik
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071I09.bB6Ng01-071I09.g
ACCDH889201DH889202
length1,1591,027
definitionDH889201|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I09, 5' end.DH889202|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,503,915 - 32,505,091)(32,610,616 - 32,611,191)
sequence
gaattctcctgctatgggatgttctctcaggccctggctccctctggcca
ctcagggtcacacttctgcattcatttctgactctggaatcatttccaac
cactccagaactgctctaacagggggcttccattatgaaagagccaagaa
aaaaaaaagagccactggttctctgagatgcttttgtgaggtcaacatta
cccacccatcccaaccacaaagaaggtggcactttccagaccacatacat
gagtgtgagagtaaacccagctgatgggatcttccaagtccacacaaaac
atgggactctagaccctgtactaaatagatgtatggtccttgccctcaat
gggattttcttgattgtcctggtggagaacacacactcactcctcatttc
aagccatgccctgggctctaggccactagctctccactacaatttcttat
agcaggaacccatatgaggaagccaagttcctgggagatagggcctggaa
acctataccttctctggatgttcaggtcattcttccaacatggacagcac
tcagactcaaatgccaacccagagctgaagacaaagagagacagagaata
ccaagttctcaagtaagttggggaagctgtgttccctgcaggcagagagc
ttgttcccccaggaagtggctccaggtctttcgagaggtctgattcagaa
ttaaaagctcagtattctcagacaggcctgcatttctataaaattgtcaa
actacacttggcgtgcaatcttctaacctttaaatgttggccacaccaaa
atagtccatgggtatgaacaaaacacaaaataggatttggctcttggagc
tctgatgaataggaacatctgaaagtggttagttttgaatcaaattgaag
gcaccaggttttagggcatctcttagccatgtttctctctaggacatcag
tcagcccatgtgggtagaagaattttcaggggtgggggttgcaacccagc
ttttgctcccaaataagttgagcaagctctgagctctcaccctctaatgc
tcctagtcacgtgtacttgcagtgagtctgccctggatggctctgctcca
tgggtgtctccttgatatcctgtgactgtccatcacaacccttcctggtc
tctacttgg
gaattctcttccctggccactttcagacccctcttccagctctcagttta
aaattctcccttggagaagccttcatcctcctagcatgctgtatatgggt
aatcagtcatttcctaagatgcaggtggccccaaagcctgtatacagctt
ggaattgtaataattttacttctttacattacataaattatttacacaat
ggaatttggaaaatatttgatcataatttattatgtttaattacagaaat
gttggctttcaacatctctgacataattttagatacatttggatgtaacc
atttcatattgtgaagggattattacatagaaaattaaagggagaaatta
caacaaatgaatcattaaaatttttgttgaatcttgagaaaacttctttg
ttgcattttgaaaattgtgtagctatttcataaaaatgaatttattaatt
tataaatacggtatacttcagctagtccaatgaaatgtattttgccatag
ttcatctgatgctcacattctcttctccacagtgagatttttctgaggtt
gatggtgcatcccactataaattttgtcttgcagcatgggctagaccgtg
gtcatgactgctggtatccattgtctgaagaatcacacatcatggttgtt
tgcatcaatatctctttggctgaattaggtgtatgattgacaatgcatat
gagaggttgagtttatatttaaaataacttcaaaatgatgtcagtccagt
ttcctcctgaaacagaaatgtttgtgtgcaaaggatacagactagagact
gttggtttgatgttagcaagggaagcacgttttaaagcatttaaaagaca
ttacttcaatattttattgcaaagcaacaatgaaatgctttacagggtgg
ttgtgaagtgatttttgttcctcctaaaatttctgtattgaaaatcgaac
cctgtattgttaatctaacagtaaccctcagagtgactgctttgagtcag
cctttacgaggtcatttagttaaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32503915_32505091
seq2: B6Ng01-071I09.b_45_1203

seq1  GAATTCTCCTGCTATGGGATGTTCTCTCAGGCCCTGGCTCCCTCTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGCTATGGGATGTTCTCTCAGGCCCTGGCTCCCTCTGGCCA  50

seq1  CTCAGGGTCACACTTCTGCATTCATTTCTGACTCTGGAATCATTTCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTCACACTTCTGCATTCATTTCTGACTCTGGAATCATTTCCAAC  100

seq1  CACTCCAGAACTGCTCTAACAGGGGGCTTCCATTATGAAAGAGCCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGAACTGCTCTAACAGGGGGCTTCCATTATGAAAGAGCCAAGAA  150

seq1  AAAAAAAAGAGCCACTGGTTCTCTGAGATGCTTTTGTGAGGTCAACATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAGCCACTGGTTCTCTGAGATGCTTTTGTGAGGTCAACATTA  200

seq1  CCCACCCATCCCAACCACAAAGAAGGTGGCACTTTCCAGACCACATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCATCCCAACCACAAAGAAGGTGGCACTTTCCAGACCACATACAT  250

seq1  GAGTGTGAGAGTAAACCCAGCTGATGGGATCTTCCAAGTCCACACAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAGAGTAAACCCAGCTGATGGGATCTTCCAAGTCCACACAAAAC  300

seq1  ATGGGACTCTAGACCCTGTACTAAATAGATGTATGGTCCTTGCCCTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTCTAGACCCTGTACTAAATAGATGTATGGTCCTTGCCCTCAAT  350

seq1  GGGATTTTCTTGATTGTCCTGGTGGAGAACACACACTCACTCCTCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTCTTGATTGTCCTGGTGGAGAACACACACTCACTCCTCATTTC  400

seq1  AAGCCATGCCCTGGGCTCTAGGCCACTAGCTCTCCACTACAATTTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGCCCTGGGCTCTAGGCCACTAGCTCTCCACTACAATTTCTTAT  450

seq1  AGCAGGAACCCATATGAGGAAGCCAAGTTCCTGGGAGATAGGGCCTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAACCCATATGAGGAAGCCAAGTTCCTGGGAGATAGGGCCTGGAA  500

seq1  ACCTATACCTTCTCTGGATGTTCAGGTCATTCTTCCAACATGGACAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATACCTTCTCTGGATGTTCAGGTCATTCTTCCAACATGGACAGCAC  550

seq1  TCAGACTCAAATGCCAACCCAGAGCTGAAGACAAAGAGAGACAGAGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCAAATGCCAACCCAGAGCTGAAGACAAAGAGAGACAGAGAATA  600

seq1  CCAAGTTCTCAAGTAAGTTGGGGAAGCTGTGTTCCCTGCAGGCAGAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCTCAAGTAAGTTGGGGAAGCTGTGTTCCCTGCAGGCAGAGAGC  650

seq1  TTGTTCCCCCAGGAAGTGGCTCCAGGTCTTTCGAGAGGTCTGATTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCCCAGGAAGTGGCTCCAGGTCTTTCGAGAGGTCTGATTCAGAA  700

seq1  TTAAAAGCTCAGTATTCTCAGACAGGCCTGCATTTCTATAAAATTGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCTCAGTATTCTCAGACAGGCCTGCATTTCTATAAAATTGTCAA  750

seq1  ACTACACTTGGCGTGCAATCTTCTAACCTTTAAATGTTGGCCACACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTTGGCGTGCAATCTTCTAACCTTTAAATGTTGGCCACACCAAA  800

seq1  ATAGTCCATGGGTATGAACAAAACACAAAATAGGATTTGGCTCTTGGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCATGGGTATGAACAAAACACAAAATAGGATTTGGCTCTTGGAGC  850

seq1  TCTGATGAATAGGAACATCTGAAAGTGGTTAGTTTTGAATCAAATTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTGATGAATAGGAACATCTGAAAGTGGTTAGTTTTGAATCAAATTGAA-  899

seq1  GGCACCAGGTTTTAGGGCATCTCTTAGCCATGTTTCTCTCTAGGACATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGGTTTTAGGGCATCTCTTAGCCATGTTTCTCTCTAGGACATCA  949

seq1  GTCAGCCCATGTGGGTAGAAGAATTTTCAGGGGGTGGGGGTTGCAACCCA  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCAGCCCATGTGGGTAGAAGAATTTTCA-GGGGTGGGGGTTGCAACCCA  998

seq1  GCTTTTGCTCCCAAATAAGTTGAGCAGGCTCTGAGCTCTTCCAACCCTCT  1050
      |||||||||||||||||||||||||| ||||||||||||    |||||||
seq2  GCTTTTGCTCCCAAATAAGTTGAGCAAGCTCTGAGCTCT---CACCCTCT  1045

seq1  AATGCTCCTAGTCACGTGTTACTTGCAGTTTGAGTCTTGCCCTGGTTTGC  1100
      |||||||||||||||||| |||||||||  |||||| |||||||| | ||
seq2  AATGCTCCTAGTCACGTG-TACTTGCAG--TGAGTC-TGCCCTGGATGGC  1091

seq1  TCTGCTCCATGTGTGTCCTCCTGGATAATCCCTTGGTGACCTGTCCATCA  1150
      ||||||||||| |||| ||||| ||| ||||    |||| ||||||||||
seq2  TCTGCTCCATGGGTGT-CTCCTTGAT-ATCC---TGTGA-CTGTCCATCA  1135

seq1  CAACTCTTCCTGGGTCCTCTACCTTGG  1177
      |||| ||||||||   ||||| |||||
seq2  CAACCCTTCCTGG--TCTCTA-CTTGG  1159

seq1: chr6_32610616_32611191
seq2: B6Ng01-071I09.g_66_641 (reverse)

seq1  CAAAATTTATAGTGGGATGCACCATCAACCTCAGAAAAATCTCACTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTATAGTGGGATGCACCATCAACCTCAGAAAAATCTCACTGTGG  50

seq1  AGAAGAGAATGTGAGCATCAGATGAACTATGGCAAAATACATTTCATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAATGTGAGCATCAGATGAACTATGGCAAAATACATTTCATTGG  100

seq1  ACTAGCTGAAGTATACCGTATTTATAAATTAATAAATTCATTTTTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTGAAGTATACCGTATTTATAAATTAATAAATTCATTTTTATGAA  150

seq1  ATAGCTACACAATTTTCAAAATGCAACAAAGAAGTTTTCTCAAGATTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTACACAATTTTCAAAATGCAACAAAGAAGTTTTCTCAAGATTCAA  200

seq1  CAAAAATTTTAATGATTCATTTGTTGTAATTTCTCCCTTTAATTTTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTTTAATGATTCATTTGTTGTAATTTCTCCCTTTAATTTTCTAT  250

seq1  GTAATAATCCCTTCACAATATGAAATGGTTACATCCAAATGTATCTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATCCCTTCACAATATGAAATGGTTACATCCAAATGTATCTAAAA  300

seq1  TTATGTCAGAGATGTTGAAAGCCAACATTTCTGTAATTAAACATAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAGAGATGTTGAAAGCCAACATTTCTGTAATTAAACATAATAAA  350

seq1  TTATGATCAAATATTTTCCAAATTCCATTGTGTAAATAATTTATGTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATCAAATATTTTCCAAATTCCATTGTGTAAATAATTTATGTAATG  400

seq1  TAAAGAAGTAAAATTATTACAATTCCAAGCTGTATACAGGCTTTGGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGTAAAATTATTACAATTCCAAGCTGTATACAGGCTTTGGGGCC  450

seq1  ACCTGCATCTTAGGAAATGACTGATTACCCATATACAGCATGCTAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATCTTAGGAAATGACTGATTACCCATATACAGCATGCTAGGAGG  500

seq1  ATGAAGGCTTCTCCAAGGGAGAATTTTAAACTGAGAGCTGGAAGAGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCTTCTCCAAGGGAGAATTTTAAACTGAGAGCTGGAAGAGGGGT  550

seq1  CTGAAAGTGGCCAGGGAAGAGAATTC  576
      ||||||||||||||||||||||||||
seq2  CTGAAAGTGGCCAGGGAAGAGAATTC  576