BAC Information

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BAC

Clone NameB6Ng01-072A05
Chromosome6 (Build37)
Map Location 108,157,768 - 108,277,440
singlet/doubletdoublet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072A05.bB6Ng01-072A05.g
ACCDH889552DH889553
length1,1401,070
definitionDH889552|Mus musculus domesticus DNA, BAC clone: B6Ng01-072A05, 5' end.DH889553|Mus musculus domesticus DNA, BAC clone: B6Ng01-072A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,157,768 - 108,158,911)(108,276,373 - 108,277,440)
sequence
gaattctcatagcctggagactattggcatgaaagttgctaggttattac
tagcttgtaagctaaataatttttaaaaaacaatttattgaaacctaact
gtcttcaaaataactgcaaaaatattacaaaagagaatccactatcaata
aatatttcacatagggttctcttcatggctttttaatgagattgttatat
ataaataaagaaatgtatactttttttttttaggttacatgatagtgtag
gttttgagattgagtttcaaataccctgagacataactttgtggcattct
aacctaaataaatcatttccctacaagctgcaaaataattaatttttaac
tatacctatatatgattttttaaaaaaacatggattcctgaattcttgca
tacagtagagctccaggcgaggcatagtggaatatgactgtgttcacata
aggaactgagggctcctgagttcaggtgagttgggttatttcgtgagacc
cccatctcaaaacaacaaagtagcttcccgaatctcctttgacaccagga
tttcatttctgctgtaataatgatagtgtgataataaaaagtcggcaagg
catttcaaggctcctggtccagttcgcctgccctagcatgttaggataac
agtcttatagatgggaggcaggaagtggggctggatggtctactttgtgg
taaactcctaactttgcatgtttcacaggaaaataatgtgtaagaaatta
ataatccttatggttttgggattccagacagcatggacaataataccatc
aggggtggcacagctgccttttccatatggaaaaaaagcagtagcaaata
gtttttgtctatatttttaaaagcatgctaagtgaatcctctactacaga
gctacaaacccaacccagtttttttgctgacttttgtaagttctgtgttg
cctgcttggtgtggtcactgaaactttcatcccagttccctctagtccca
ggtgactaagtagcagctcttctaaattctcgagatcagacaacaaacga
aaagcctcaatttgggatgtttttcctcttggcggaacagaatgttcttg
gctgataaggaaatgccttccctttctagccttcagacta
gaattcacttggttcaaggaggttttggcttgtttgtttgttttgttttg
aagctgtaattcaacataaagggaatgagagaaggttgtggggggaaaaa
aaggaatgctggatggatctatccaataaaaagaatctaacacatggaca
catggagagtcgggggtagagcgagaaaagtcacatttgtgacacaaaca
acactgtaggctttggggtgaaaactcttgctatattgaactcatttcac
ctctcagagtcaaaagcaaagagatctcactgcaccaggcctggtgtttc
aaaacctgcagccttagccacgccagcttatagccaccaaagggctttgg
aaggcttaaggcagcctggcatgaaaggagttacataagttaccaggctg
gtccttcccagagtctcctggaaaagtacacttttttttcactacacaaa
aggaaagtaggctgtttctgccccacgatgtgatgtgcctttcacttaaa
gtcagtaaaacctggttgcaggcaccatgggaagcctgaagagtgtctgc
atcacggggacacggggacacaaaagcaagccgagatgcgaaagccatct
agcgaagccctcggcggagcttggcaggtacaggccgctggcagggaagg
aagatcactgtgtacacaaagaaagaagccagaggagtcagttgctcggg
agccaggcccgtagccccacagatgatttcctcatctgtgcagtgggtac
ggactggaaatagaaaaggaaccaacagccgagcagagctgccgcagacg
gctttgcctcagttctccacaggaagagaacaaggatgcctgcccatgta
tactttgctatcgctttctttcgtgcttgctacttagagagacgatgaga
acctaacctggaccaccccaggactgtgctccacccagcactccgagaca
gctcctgtcaggtggggtgtggggccatgccctcaccattcagaaaagat
cattttatcagcactcaaactcatcaggcctccctgagatattttaaaga
caaaacaaatccctggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108157768_108158911
seq2: B6Ng01-072A05.b_46_1185

seq1  GAATTCTCATAGCCTGGAGACTATTGGCATGAAAGTTGCTAGGTTATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAGCCTGGAGACTATTGGCATGAAAGTTGCTAGGTTATTAC  50

seq1  TAGCTTGTAAGCTAAATAATTTTTAAAAAACAATTTATTGAAACCTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTAAGCTAAATAATTTTTAAAAAACAATTTATTGAAACCTAACT  100

seq1  GTCTTCAAAATAACTGCAAAAATATTACAAAAGAGAATCCACTATCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAAATAACTGCAAAAATATTACAAAAGAGAATCCACTATCAATA  150

seq1  AATATTTCACATAGGGTTCTCTTCATGGCTTTTTAATGAGATTGTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCACATAGGGTTCTCTTCATGGCTTTTTAATGAGATTGTTATAT  200

seq1  ATAAATAAAGAAATGTATACTTTTTTTTTTTAGGTTACATGATAGTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGAAATGTATACTTTTTTTTTTTAGGTTACATGATAGTGTAG  250

seq1  GTTTTGAGATTGAGTTTCAAATACCCTGAGACATAACTTTGTGGCATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGATTGAGTTTCAAATACCCTGAGACATAACTTTGTGGCATTCT  300

seq1  AACCTAAATAAATCATTTCCCTACAAGCTGCAAAATAATTAATTTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAATAAATCATTTCCCTACAAGCTGCAAAATAATTAATTTTTAAC  350

seq1  TATACCTATATATGATTTTTTAAAAAAACATGGATTCCTGAATTCTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTATATATGATTTTTTAAAAAAACATGGATTCCTGAATTCTTGCA  400

seq1  TACAGTAGAGCTCCAGGCGAGGCATAGTGGAATATGACTGTGTTCACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGAGCTCCAGGCGAGGCATAGTGGAATATGACTGTGTTCACATA  450

seq1  AGGAACTGAGGGCTCCTGAGTTCAGGTGAGTTGGGTTATTTCGTGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGAGGGCTCCTGAGTTCAGGTGAGTTGGGTTATTTCGTGAGACC  500

seq1  CCCATCTCAAAACAACAAAGTAGCTTCCCGAATCTCCTTTGACACCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCAAAACAACAAAGTAGCTTCCCGAATCTCCTTTGACACCAGGA  550

seq1  TTTCATTTCTGCTGTAATAATGATAGTGTGATAATAAAAAGTCGGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCTGCTGTAATAATGATAGTGTGATAATAAAAAGTCGGCAAGG  600

seq1  CATTTCAAGGCTCCTGGTCCAGTTCGCCTGCCCTAGCATGTTAGGATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAGGCTCCTGGTCCAGTTCGCCTGCCCTAGCATGTTAGGATAAC  650

seq1  AGTCTTATAGATGGGAGGCAGGAAGTGGGGCTGGATGGTCTACTTTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATAGATGGGAGGCAGGAAGTGGGGCTGGATGGTCTACTTTGTGG  700

seq1  TAAACTCCTAACTTTGCATGTTTCACAGGAAAATAATGTGTAAGAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCTAACTTTGCATGTTTCACAGGAAAATAATGTGTAAGAAATTA  750

seq1  ATAATCCTTATGGTTTTGGGATTCCAGACAGCATGGACAATAATACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTTATGGTTTTGGGATTCCAGACAGCATGGACAATAATACCATC  800

seq1  AGGGGTGGCACAGCTGCCTTTTCCATATGGAAAAAAAGCAGTAGCAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGCACAGCTGCCTTTTCCATATGGAAAAAAAGCAGTAGCAAATA  850

seq1  GTTTTTGTCTATATTTTTAAAAAGCATGCTAAGTGAATCCTCTACTACAG  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTTTTGTCTATATTTTT-AAAAGCATGCTAAGTGAATCCTCTACTACAG  899

seq1  AGCTACAAACCCAACCCAGTTTTTTTGCTGACTTTTGTAAGTTCTGTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAACCCAACCCAGTTTTTTTGCTGACTTTTGTAAGTTCTGTGTT  949

seq1  GCCTGCTTGGTGTGGTCACTGATAC-TTCATCCCAGTTCCCTCTAGTCCC  999
      |||||||||||||||||||||| || ||||||||||||||||||||| ||
seq2  GCCTGCTTGGTGTGGTCACTGAAACTTTCATCCCAGTTCCCTCTAGT-CC  998

seq1  CAGGTGACTAAGTAGCAGGCTCTTCTAAATTCTCGAGATCAGACAACAAA  1049
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGGTGACTAAGTAGCA-GCTCTTCTAAATTCTCGAGATCAGACAACAAA  1047

seq1  CGAAGAGCCTCCAATTTGTGATGTTTT--CTCTTGGCGGAACAGGATGTC  1097
      |||| ||||| ||||||| ||||||||  ||||||||||||||| |||| 
seq2  CGAAAAGCCT-CAATTTGGGATGTTTTTCCTCTTGGCGGAACAGAATGTT  1096

seq1  CTGGGCCTGGATACAGGAAATGCCTTCCCTTTCTAAGCTTCAGACTA  1144
      || |||   |||| |||||||||||||||||||||  ||||||||||
seq2  CTTGGC--TGATA-AGGAAATGCCTTCCCTTTCTAGCCTTCAGACTA  1140

seq1: chr6_108276373_108277440
seq2: B6Ng01-072A05.g_68_1137 (reverse)

seq1  AAGTCCAGTGATCTG-TTTGTCTTT-AAATATCTCAGTGAGG-CTGATGA  47
      |||||||| ||| || ||||||||| ||||||||||| |||| |||||||
seq2  AAGTCCAGGGATTTGTTTTGTCTTTAAAATATCTCAGGGAGGCCTGATGA  50

seq1  GTTTGAGTGCTGATTAAAAATGATCTTTTCTGAATGGTGAGGGCATGGCC  97
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTGCTGAT--AAAATGATCTTTTCTGAATGGTGAGGGCATGGCC  98

seq1  CCACA-CCCACCTGACAGGAGCTGTCTCGGAGTGCTGGGTGGAGCACAGT  146
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCCACCTGACAGGAGCTGTCTCGGAGTGCTGGGTGGAGCACAGT  148

seq1  CCTGGGGTGGTCCAGGTTAGGTTCTCATCGTCTCTCTAAGTAGCAAGCAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTGGGGTGGTCCAGGTTAGGTTCTCATCGTCTCTCTAAGTAGCAAGCAC  198

seq1  GAAAGAAAGGGATAGCAAAGTATACATGGGCAGGCATCCTTGTTCTCTTC  246
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGCGATAGCAAAGTATACATGGGCAGGCATCCTTGTTCTCTTC  248

seq1  CTGTGGAGAACTGAGGCAAAGCCGTCTGCGGCAGCTCTGCTCGGCTGTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGAACTGAGGCAAAGCCGTCTGCGGCAGCTCTGCTCGGCTGTTG  298

seq1  GTTCCTTTTCTATTTCCAGTCCGTACCCACTGCACAGATGAGGAAATCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTTCTATTTCCAGTCCGTACCCACTGCACAGATGAGGAAATCAT  348

seq1  CTGTGGGGCTACGGGCCTGGCTCCCGAGCAACTGACTCCTCTGGCTTCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGCTACGGGCCTGGCTCCCGAGCAACTGACTCCTCTGGCTTCTT  398

seq1  TCTTTGTGTACACAGTGATCTTCCTTCCCTGCCAGCGGCCTGTACCTGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGTACACAGTGATCTTCCTTCCCTGCCAGCGGCCTGTACCTGCC  448

seq1  AAGCTCCGCCGAGGGCTTCGCTAGATGGCTTTCGCATCTCGGCTTGCTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCGCCGAGGGCTTCGCTAGATGGCTTTCGCATCTCGGCTTGCTTT  498

seq1  TGTGTCCCCGTGTCCCCGTGATGCAGACACTCTTCAGGCTTCCCATGGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCCGTGTCCCCGTGATGCAGACACTCTTCAGGCTTCCCATGGTG  548

seq1  CCTGCAACCAGGTTTTACTGACTTTAAGTGAAAGGCACATCACATCGTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAACCAGGTTTTACTGACTTTAAGTGAAAGGCACATCACATCGTGG  598

seq1  GGCAGAAACAGCCTACTTTCCTTTTGTGTAGTGAAAAAAAAGTGTACTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAACAGCCTACTTTCCTTTTGTGTAGTGAAAAAAAAGTGTACTTT  648

seq1  TCCAGGAGACTCTGGGAAGGACCAGCCTGGTAACTTATGTAACTCCTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGACTCTGGGAAGGACCAGCCTGGTAACTTATGTAACTCCTTTC  698

seq1  ATGCCAGGCTGCCTTAAGCCTTCCAAAGCCCTTTGGTGGCTATAAGCTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGCTGCCTTAAGCCTTCCAAAGCCCTTTGGTGGCTATAAGCTGG  748

seq1  CGTGGCTAAGGCTGCAGGTTTTGAAACACCAGGCCTGGTGCAGTGAGATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTAAGGCTGCAGGTTTTGAAACACCAGGCCTGGTGCAGTGAGATC  798

seq1  TCTTTGCTTTTGACTCTGAGAGGTGAAATGAGTTCAATATAGCAAGAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTTTGACTCTGAGAGGTGAAATGAGTTCAATATAGCAAGAGTT  848

seq1  TTCACCCCAAAGCCTACAGTGTTGTTTGTGTCACAAATGTGACTTTTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCCAAAGCCTACAGTGTTGTTTGTGTCACAAATGTGACTTTTCTC  898

seq1  GCTCTACCCCCGACTCTCCATGTGTCCATGTGTTAGATTCTTTTTATTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACCCCCGACTCTCCATGTGTCCATGTGTTAGATTCTTTTTATTGG  948

seq1  ATAGATCCATCCAGCATTCCTTTTTTTCCCCCCACAACCTTCTCTCATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCCATCCAGCATTCCTTTTTTTCCCCCCACAACCTTCTCTCATTC  998

seq1  CCTTTATGTTGAATTACAGCTTCAAAACAAAACAAACAAACAAGCCAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGTTGAATTACAGCTTCAAAACAAAACAAACAAACAAGCCAAAA  1048

seq1  CCTCCTTGAACCAAGTGAATTC  1068
      ||||||||||||||||||||||
seq2  CCTCCTTGAACCAAGTGAATTC  1070