BAC Information

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BAC

Clone NameB6Ng01-072D08
Chromosome6 (Build37)
Map Location 48,125,451 - 48,126,141
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap2, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072D08.bB6Ng01-072D08.g
ACCDH889687DH889688
length1,2621,145
definitionDH889687|Mus musculus domesticus DNA, BAC clone: B6Ng01-072D08, 5' end.DH889688|Mus musculus domesticus DNA, BAC clone: B6Ng01-072D08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgccggcgagatactagctcggccgagaagtggcgccaagaaa
cccgggaatatatatatcatcaccaggtgctgataggagacccccccccc
catttcatggggtgggttcagaactacgggactttacagctttacaaggt
atgtctggccttgaactttctccagcgttagaagcctttctgttcctttt
cacagggctcgttccttttctttttgattgcgtactgtttccaccggtgg
aattgctaactggtgttcagtcgaggtcaggcacgattagaaaaaggcaa
gaagatagcatgggggcctcccactctgtagtaactgccttacggtcggt
cctgaggcagagtggcttaaaagtcgccaccaagacactagaaggctttg
taaaagaggtagatcgcatagcaccgtggtttgcgtgctcaaggtcctta
actatcccctcttgggagaaactcaagggagatttagttggggaactgga
gaacggcaaacttaaagcaggaaccatgctgttgtggaagctgatcagat
cgtgcttaaaggacgaggaatatcaacaagtggttaaggcagggcagaaa
attctggatgaaattcaagacagtctatcagaggtagagcagggagaaag
attgggagcaaagaggaaacatggtgcaccaattaagcatacaggccttt
ccacgagtcttgaactcgaggaaaagataatgtcgggaaagaatacctgg
ggtgaatttggaaggaaggagaaggaaaaagagaagaagaaaaatcaatc
agcggaggtccctaggagaaggaacctatacccgccactagatgcgttta
aggacctagctcttagtagctcagtatcagatgagaaacttagcccctct
gaggaaacagacttggaggaggaagcagctcgttatgagggagaaagtac
caccagataaaatgcaagctatcagtccagaaaagccaaagcggctggcg
aaagccagcttgctgttcggcctccggactgtcggcttcagggtcctagt
gcacctccgccttatgtgcagagggatcattcagcctcattcatccaaaa
aggaacgaagaatgcaatggcatttcagttttgaggaccaaggagggcgg
tcaccctcttgtgatatgtacagataaggactgcaactgtcctacattgg
atcacgccaattcattagccatgcaggcttcgcgccttggccatgacttc
tcggagaattgg
gaattcccccaatggtcaggtgtggtgaataggaagcaacacccacatca
ctaacccagggcttctgggacccagcaggtatagcagtcggggagcaggg
ctctctgcccccttggccctgggtagggttgagcagattatataagctca
ctgaattcatcaggcatggaaaaatgtagggaggcttcatggaagagctc
caggacgtggaaacgtaatggttctgagagcacgactgaggattgcagga
agctaattaagttagcacctcctatctacgctttgtacctgaccttgatc
tttggaggaagcaaatgatacaaatggatggaacctttccatgctgtatt
agaccctgcccattttaactttagttagttatcttcttagttgtgaactt
ctgtgctcacccaacacttgctgagaacagatggcaacagactttcagag
tgtttcaccaaggttatttttggagccctttgtcttagagtttcactgct
gtgaaaagacactgatcactgatggcaactcttacaaaaagaaacattta
attggggctggcttacagtttcagaggtttagtccattatcatcatggca
gagtggtgtgcaggcagacgtggtgctggagaagttctacatcctgatcc
acaggtaacaaaaggagactgtgtgtcacactgagcataactagagcata
ggaaacctcaaagcccacccccacagtaacacatttcctccaacaaggcc
atgcctactccaacaaggtcacacactatggatcatgcattcaaacacat
gagtctgtgggggccatgcctattcaaaccaccacacccctatttgttat
gggataatgatttgggatgttgccttattctgtttatcccatgaaaaagt
ttttgttatattgatgacataatgctatatctgagtgttttgcagatttg
gaaagcactggaagaattaaccagatatagtactttcacctatcttatac
ctacaataactgggtcaactgaagggaaaattcagaggttatgctacatt
ggcagaaaaggacactcacagagcatatgttattaataatatggtatata
aaaccccaggctattccccgggccaccaggatgtgcttgcacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48125451_48126141
seq2: B6Ng01-072D08.g_539_1211

seq1  GAGCCCTTTGTCTTAGAGTTTCACTGCTGTGAAAAGACACTGATCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTTGTCTTAGAGTTTCACTGCTGTGAAAAGACACTGATCACTGA  50

seq1  TGGCAACTCTTACAAAAAGAAACATTTAATTGGGGCTGGCTTACAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACTCTTACAAAAAGAAACATTTAATTGGGGCTGGCTTACAGTTTC  100

seq1  AGAGGTTTAGTCCATTATCATCATGGCAGAGTGGTGTGCAGGCAGACGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTAGTCCATTATCATCATGGCAGAGTGGTGTGCAGGCAGACGTG  150

seq1  GTGCTGGAGAAGTTCTACATCCTGATCCACAGGTAACAAAAGGAGACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAGAAGTTCTACATCCTGATCCACAGGTAACAAAAGGAGACTGT  200

seq1  GTGTCACACTGAGCATAACTAGAGCATAGGAAACCTCAAAGCCCACCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACACTGAGCATAACTAGAGCATAGGAAACCTCAAAGCCCACCCCC  250

seq1  ACAGTAACACATTTCCTCCAACAAGGCCATGCCTACTCCAACAAGGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACACATTTCCTCCAACAAGGCCATGCCTACTCCAACAAGGTCAC  300

seq1  ACACTATGGATCATGCATTCAAACACATGAGTCTGTGGGGGCCATGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATGGATCATGCATTCAAACACATGAGTCTGTGGGGGCCATGCCTA  350

seq1  TTCAAACCACCACACCCCTATTTGTTATGGGATAATGATTTGGGATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCACCACACCCCTATTTGTTATGGGATAATGATTTGGGATGTTG  400

seq1  CCTTATTCTGTTTATCCCATGAAAAAGTTTTTGTTATATTGATGACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCTGTTTATCCCATGAAAAAGTTTTTGTTATATTGATGACATAA  450

seq1  TGCTAATATCTGAGTGTTTTGCAGATTTGGAAAGCCACTGG-AGAAATAA  499
      |||| ||||||||||||||||||||||||||||| |||||| |||| |||
seq2  TGCT-ATATCTGAGTGTTTTGCAGATTTGGAAAG-CACTGGAAGAATTAA  498

seq1  CCAGATATAGTACTTCCACCTATCTTATAACCTACAATAACTGGGTCAAC  549
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  CCAGATATAGTACTTTCACCTATCTTAT-ACCTACAATAACTGGGTCAAC  547

seq1  TGAAAGGAAAAAATTCAAGAGG-TATGCTACATTGGCAGAAAAGGACACT  598
      |||| ||  ||||||| ||||| |||||||||||||||||||||||||||
seq2  TGAAGGG--AAAATTC-AGAGGTTATGCTACATTGGCAGAAAAGGACACT  594

seq1  CACAGAAGCCATAATGTTATTAATAAATAATGTTATTAAATAAAACCCCC  648
      ||||||   ||| |||||||||||||   ||| |||   |||||| ||||
seq2  CACAGA--GCAT-ATGTTATTAATAA--TATGGTAT---ATAAAA-CCCC  635

seq1  AGTGCTATGTACCACCGTGCCACACAGGATGTGCTTGCACAAT  691
      || |||||    | ||| ||||| |||||||||||||||||||
seq2  AG-GCTAT---TCCCCGGGCCAC-CAGGATGTGCTTGCACAAT  673