BAC Information

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BAC

Clone NameB6Ng01-072G05
Chromosome6 (Build37)
Map Location 31,067,967 - 31,211,424
singlet/doubletdoublet
Overlap geneLOC100038973, AB041803
Upstream geneNrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
Downstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072G05.bB6Ng01-072G05.g
ACCDH889820DH889821
length1,1541,059
definitionDH889820|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G05, 5' end.DH889821|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,067,967 - 31,069,137)(31,210,367 - 31,211,424)
sequence
gaattcactgcattgtctaagccgtcctcgaacttacaccgtaactcagg
caggctacgaacgtgcttccttctgtggctcagcctacagagtagatagg
attctaggcgtggctaacatttggtttctgcctcttctacttttgtgggg
cttatatgtactcagtttttttaattctaagtggaagttttctatatgca
gataattctcctaaggtcacgtgagaaaaatggcatttttctgtttgtta
acagacaaaagacaaaaatccataaaaataacagatgtgtcaggatataa
ggatctggaaatcttaggctctaataaatttaagacaagaaatgcaacat
ccacctgcacaaccatacagaagcattattctcaacagccacgaagtcaa
gtccacccagttgtccagcaatggtgaccaaataaaagtatttcctgtac
aatggaatcctacccagcttcaaaaagcaaagaactcctttcaaggttat
gaggacagacctggaggatgctgagacacaaaagacaaacgctgtgtgac
ctgacgcatacaggatccctacaatagaatcactgagttgggaaatagag
gagacccccggtggatgcagctagttgtttaggaaaaacacacagtgtgt
tttgatggagagaattctgaagaaagaaggaagtgactgtaatgtgtgtc
aatgtgtttagtatctctgattagtgcactgaatggtggccaagaaagta
aaaatttaaaacgtattttacaattagctataacacacacacacacacac
acccatgcatgtgcacatccagctggaagtcaagatttcagtcttcctct
atcaatccacctaatattttttgagataggtctttttttttttaacccca
gaacctggaaactaccatcccaaccagaccaactggttagataggggtcc
ctagtcttttgtacccctaggccacccctacccctactcccagtgtagct
gtgactacagacgtgaccctcagaccctggctttatgtggggctggggat
ctgattcaggtcccatgcttgctgacagtgctatcacttagtcacttctc
agcctcggatattagttgcattttggagcataagtcgccatatacagacc
ctct
gaattctgggattacagacacacatgaccacatgcagaattgacagggtc
tctggggattcaaactcaggtccttacacttgtgtggtcaaggctttacc
tcctgagccatctccccagtccaaatgaatagatatttcaagaactttgg
ttctgtagggaaaggggccgagagcaaacaaacagcaataagcaggcttc
cagggcaagccacagaaactccctgtgccgaagattttggtttgagcaca
atgagacaaagccacaggctttatgacagccacaggcacacagccaaggc
cttcagacgctgtgtatttggactgctgtaacccccagtgttagaagccc
cattcttaatacctagtaccccagatataacacgtcttctttcacttggg
tttctactgcggttactcctccatttccttttaagttcttaatgaaaaaa
aaaatgacaccctggatttttgaaaggagacgccctgaattccaattccc
caacactgattttctttggagttttgctcaatctgagaggctgtgaggaa
agagcaccgcgctgaatcagacttgggcttttgtctccaagaggctgtcc
gcctttaataaagttacataactgccctttgccttagttttcccgagtat
aaaatggaggggtgaagtcagatgaactttaaaatctctcaactccaaca
ggaggtgattctgtctctcagccactttttctgagctttcataacccttg
tagggaaatgtaggtataaagtaatgttgacatggttcattaactcctat
actatatccgggaaaacgtttcacgtatagtgagtcttgtaatggaaaag
ctgtaattaaaaacttgagaatccccccaggtagctacccaagttaccaa
aagctatacaaattggtaccttattccctgcatggcagttacatatacaa
gcatttgaggcattaatataagtaatatattaaatttgatatggtcctcc
tatcctttgttgaaacatgcttcccaatgtaaataaaagactgttccatc
agtaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_31067967_31069137
seq2: B6Ng01-072G05.b_49_1202

seq1  GAATTCACTGCATTGTCTAAGCCGTCCTCGAACTTACACCGTAACTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCATTGTCTAAGCCGTCCTCGAACTTACACCGTAACTCAGG  50

seq1  CAGGCTACGAACGTGCTTCCTTCTGTGGCTCAGCCTACAGAGTAGATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACGAACGTGCTTCCTTCTGTGGCTCAGCCTACAGAGTAGATAGG  100

seq1  ATTCTAGGCGTGGCTAACATTTGGTTTCTGCCTCTTCTACTTTTGTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGCGTGGCTAACATTTGGTTTCTGCCTCTTCTACTTTTGTGGGG  150

seq1  CTTATATGTACTCAGTTTTTTTAATTCTAAGTGGAAGTTTTCTATATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGTACTCAGTTTTTTTAATTCTAAGTGGAAGTTTTCTATATGCA  200

seq1  GATAATTCTCCTAAGGTCACGTGAGAAAAATGGCATTTTTCTGTTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTCTCCTAAGGTCACGTGAGAAAAATGGCATTTTTCTGTTTGTTA  250

seq1  ACAGACAAAAGACAAAAATCCATAAAAATAACAGATGTGTCAGGATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAAAGACAAAAATCCATAAAAATAACAGATGTGTCAGGATATAA  300

seq1  GGATCTGGAAATCTTAGGCTCTAATAAATTTAAGACAAGAAATGCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGGAAATCTTAGGCTCTAATAAATTTAAGACAAGAAATGCAACAT  350

seq1  CCACCTGCACAACCATACAGAAGCATTATTCTCAACAGCCACGAAGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCACAACCATACAGAAGCATTATTCTCAACAGCCACGAAGTCAA  400

seq1  GTCCACCCAGTTGTCCAGCAATGGTGACCAAATAAAAGTATTTCCTGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCAGTTGTCCAGCAATGGTGACCAAATAAAAGTATTTCCTGTAC  450

seq1  AATGGAATCCTACCCAGCTTCAAAAAGCAAAGAACTCCTTTCAAGGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATCCTACCCAGCTTCAAAAAGCAAAGAACTCCTTTCAAGGTTAT  500

seq1  GAGGACAGACCTGGAGGATGCTGAGACACAAAAGACAAACGCTGTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGACCTGGAGGATGCTGAGACACAAAAGACAAACGCTGTGTGAC  550

seq1  CTGACGCATACAGGATCCCTACAATAGAATCACTGAGTTGGGAAATAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGCATACAGGATCCCTACAATAGAATCACTGAGTTGGGAAATAGAG  600

seq1  GAGACCCCCGGTGGATGCAGCTAGTTGTTTAGGAAAAACACACAGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCCGGTGGATGCAGCTAGTTGTTTAGGAAAAACACACAGTGTGT  650

seq1  TTTGATGGAGAGAATTCTGAAGAAAGAAGGAAGTGACTGTAATGTGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGAGAGAATTCTGAAGAAAGAAGGAAGTGACTGTAATGTGTGTC  700

seq1  AATGTGTTTAGTATCTCTGATTAGTGCACTGAATGGTGGCCAAGAAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTTAGTATCTCTGATTAGTGCACTGAATGGTGGCCAAGAAAGTA  750

seq1  AAAATTTAAAACGTATTTTACAATTAGCTATAACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAACGTATTTTACAATTAGCTATAACACACACACACACACAC  800

seq1  ACCCATGCATGTGCACATCCAAGCTGGAAGTCAAGATTTCAGTCTTCCTC  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCCATGCATGTGCACATCC-AGCTGGAAGTCAAGATTTCAGTCTTCCTC  849

seq1  TATCAATCCACCTAATATTTTTTGAGATAGGTCTTTTTTTTTTTAACCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATCCACCTAATATTTTTTGAGATAGGTCTTTTTTTTTTTAACCCC  899

seq1  AGAACCTGGAAACTACCATCCCAACCAGACCAACTGGTTAGATAGGGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAACCTGGAAACTACCATCCCAACCAGACCAACTGGTTAGATAGGGGT-  948

seq1  CCCTAGTC-TTTGTACCCCTAGGCCACCCCTACCCCCTACCTCCCAGTGT  999
      |||||||| ||||||||||||||||||||||| |||||| ||||||||||
seq2  CCCTAGTCTTTTGTACCCCTAGGCCACCCCTA-CCCCTA-CTCCCAGTGT  996

seq1  AGCTGTGACTACAGACGTGACCCTCAGACCCTGGCCTTTATGTGGGGGCT  1049
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AGCTGTGACTACAGACGTGACCCTCAGACCCTGG-CTTTATGT-GGGGCT  1044

seq1  GGGGATCTGAATTCAGGTCCCCATGCTTGCTTGACAAGTGCTTAATTCAC  1099
      ||||||||| |||||||| ||||||||||| |||| ||||||    ||||
seq2  GGGGATCTG-ATTCAGGT-CCCATGCTTGC-TGAC-AGTGCT---ATCAC  1087

seq1  TAAGTCACTTCTCCAGCCTCGGATTATATGTGCATTTTAGGAGCATATAG  1149
      | |||||||||| |||||||||||  ||  |||||||| |||||||| ||
seq2  TTAGTCACTTCT-CAGCCTCGGATATTAGTTGCATTTT-GGAGCATA-AG  1134

seq1  TCGCACATAATACAGACACTCT  1171
      |||| ||| |||||||| ||||
seq2  TCGC-CAT-ATACAGACCCTCT  1154

seq1: chr6_31210367_31211424
seq2: B6Ng01-072G05.g_69_1127 (reverse)

seq1  TTTTTTACTGATGGAACAGTCTCTTATTTACATTGTGAGCTATGTTTCAA  50
      |||||||||||||||||||||| |||||||||||| ||   |||||||||
seq2  TTTTTTACTGATGGAACAGTCTTTTATTTACATTGGGAAGCATGTTTCAA  50

seq1  CAAAGATTAGAAGGACCATATCAAATTTAATATATTACTTATAATTAATG  100
      |||||  ||| ||||||||||||||||||||||||||||||| |||||||
seq2  CAAAGGATAGGAGGACCATATCAAATTTAATATATTACTTAT-ATTAATG  99

seq1  CCTCAAATGCTTGTATATGTAACTGCCATGCAGGGAATAAGGTACCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATGCTTGTATATGTAACTGCCATGCAGGGAATAAGGTACCAATT  149

seq1  TGTATAGCTTTTGGTAACTTTGGTAGCTACCTGGGGGATTTCTCAAGTTT  200
      |||||||||||||||||||| ||||||||||||||||  |||||||||||
seq2  TGTATAGCTTTTGGTAACTTGGGTAGCTACCTGGGGGGATTCTCAAGTTT  199

seq1  TTAATTACAGCTTTTCCATTAC-AGACTCACTATACGTGAAACGTTTTCC  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAATTACAGCTTTTCCATTACAAGACTCACTATACGTGAAACGTTTTCC  249

seq1  CGGATATAGTATAGGAGTTAATGAACCATGTCAACATTACTTTATACCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATATAGTATAGGAGTTAATGAACCATGTCAACATTACTTTATACCTA  299

seq1  CATTTCCCTACAAGGGTTATGAAAGCTCAG-AAAAGTGGCTGAGAGACAG  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTTCCCTACAAGGGTTATGAAAGCTCAGAAAAAGTGGCTGAGAGACAG  349

seq1  AATCACCTCCTGTTGGAGTTGAGAGATTTTAAAGTTCATCTGACTTCACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTCCTGTTGGAGTTGAGAGATTTTAAAGTTCATCTGACTTCACC  399

seq1  CCTCCATTTTATACTCGGGAAAACTAAGGCAAAGGGCAGTTATGTAACTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTTTATACTCGGGAAAACTAAGGCAAAGGGCAGTTATGTAACTT  449

seq1  TATTAAAGGCGGACAGCCTCTTGGAGACAAAAGCCCAAGTCTGATTCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGGCGGACAGCCTCTTGGAGACAAAAGCCCAAGTCTGATTCAGC  499

seq1  GCGGTGCTCTTTCCTCACAGCCTCTCAGATTGAGCAAAACTCCAAAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGCTCTTTCCTCACAGCCTCTCAGATTGAGCAAAACTCCAAAGAAA  549

seq1  ATCAGTGTTGGGGAATTGGAATTCAGGGCGTCTCCTTTCAAAAATCCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGTTGGGGAATTGGAATTCAGGGCGTCTCCTTTCAAAAATCCAGG  599

seq1  GTGTCATTTTTTTTTTCATTAAGAACTTAAAAGGAAATGGAGGAGTAACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTTTTTTTTTCATTAAGAACTTAAAAGGAAATGGAGGAGTAACC  649

seq1  GCAGTAGAAACCCAAGTGAAAGAAGACGTGTTATATCTGGGGTACTAGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGAAACCCAAGTGAAAGAAGACGTGTTATATCTGGGGTACTAGGT  699

seq1  ATTAAGAATGGGGCTTCTAACACTGGGGGTTACAGCAGTCCAAATACACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAATGGGGCTTCTAACACTGGGGGTTACAGCAGTCCAAATACACA  749

seq1  GCGTCTGAAGGCCTTGGCTGTGTGCCTGTGGCTGTCATAAAGCCTGTGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGAAGGCCTTGGCTGTGTGCCTGTGGCTGTCATAAAGCCTGTGGC  799

seq1  TTTGTCTCATTGTGCTCAAACCAAAATCTTCGGCACAGGGAGTTTCTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCATTGTGCTCAAACCAAAATCTTCGGCACAGGGAGTTTCTGTG  849

seq1  GCTTGCCCTGGAAGCCTGCTTATTGCTGTTTGTTTGCTCTCGGCCCCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCCTGGAAGCCTGCTTATTGCTGTTTGTTTGCTCTCGGCCCCTTT  899

seq1  CCCTACAGAACCAAAGTTCTTGAAATATCTATTCATTTGGACTGGGGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAGAACCAAAGTTCTTGAAATATCTATTCATTTGGACTGGGGAGA  949

seq1  TGGCTCAGGAGGTAAAGCCTTGACCACACAAGTGTAAGGACCTGAGTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGAGGTAAAGCCTTGACCACACAAGTGTAAGGACCTGAGTTTG  999

seq1  AATCCCCAGAGACCCTGTCAATTCTGCATGTGGTCATGTGTGTCTGTAGT  1048
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATCCCCAGAGACCCTGTCAATTCTGCATGTGGTCATGTGTGTCTGTAAT  1049

seq1  CCCAGAATTC  1058
      ||||||||||
seq2  CCCAGAATTC  1059