BAC Information

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BAC

Clone NameB6Ng01-072G14
Chromosome6 (Build37)
Map Location 6,267,119 - 6,404,943
singlet/doubletdoublet
Overlap geneEG667468, LOC667471, LOC100040096
Upstream geneAsb4, Pdk4, Dync1i1, Slc25a13, EG667462
Downstream geneShfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072G14.bB6Ng01-072G14.g
ACCDH889837DH889838
length1,1191,065
definitionDH889837|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G14, 5' end.DH889838|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,403,841 - 6,404,943)(6,267,119 - 6,268,189)
sequence
gaattcctcaaaagattctcttgagaatcttgagtttctcaagaccgaca
acatggtgcctggtccgtggtggaatgtatgtgagtgtgatcctcccagc
cctgtgctgggtcgagagggattcagcgagattacacacgtgcaaagggc
ttagtggtttgataggcagcaggtattactacttaattgtggtagggatg
aactaacaggtaatactagtgtgatttgggttccttatcccctcaagttg
cccctttcataggttttcaatatctgctttgctgagacacaaacaggctc
taggggtgttgtatgtgtgcattcagccagaagaatgccccaccgctggc
agctggcattgtgaagaaaagggaagatctgggagaggtggggagagctt
agaagggagaccacagccaagtttgtaccacatgctagatatgtttatag
ctacaaactgatggaaagttagggagacaacacagagatgtctggaggac
cctccacgacagatctgttctcacagcatgtcttagttttttgtttgttt
gtttgcttgcttgcttttttttttttttttttttttttttttttacattg
tcttaggaacaaccacatacccacacacaacttaaagatagaatgaggga
ctgtctcctcatttgttatgtcttaagtaactgtggtttgttaagactga
gattgtaatcaagtggacgtattcaaggtcgtttataaagttctctctca
ccagcacccccaagatgcaaaactaaaacctgctttgtttgatccctaca
tgcaagctatctttttattaccattactaattactgttattgttgaaaga
gttcattttattacaaacattacttttttattggttgtatttccactttt
acatagaaccgtagcggcatatgtaaaggtacgtaatatggaaagcaagt
tcccggggcggggcttggatgccagcgtgtgtgttgggtttaatggttgt
gaccattcctctcctggcctgttggtggggcttcccttctctcctatgta
aactttgggccatcctgaataatataactggggaagaaacctctagttaa
cgtttcccgccttccttta

gaattcactgtcagtcttttcctggaaaaatctcctcagagacacatgaa
agctttctattaagaagtagacatgaatctgatctgtttacgaagaatcc
caacatggaatttaacatggaatttataatttatttagtttttaactatt
ttcaataatgtacattgttgtatatatatatacttaacatctgtatatat
catttaaaagagtagccatatgtatagagtttgagcaggcatctgacaaa
ttctccacacatatataactttgtaaaaactaatagttttagcaaagtgt
gctttgaaacttttggcaaacatatcagaacaccgtgtttggtttagttt
gacttaatagctatgatttttaaaattgttcaactgttcttttttagtac
tgagtttaaaagacaaaaatttatatcaagcttctctgaaaattcttttc
tgtgtatcatacataattaagcactcatgtaagtttttgaagcttcaaaa
ttggtcactacggacggtctatgattttgttgtattcgagcctatttttt
tctcatcaaagatgatttcaactatacagctcaaactgtcagtaaaaaaa
aggatcccagctgtcttagatacgagagtcctagtggagacttgatagac
tgttcataaaaactcattgtaaaggtctggatatttgctgacccttctat
cagtgggaaataagatctcaccaacaggggcgctggctttccattagtag
aggaagagcggagcctgtcgttctctacccaactgagctggcattactgc
tcaagtctacacaatgtaagaatctctgggcaaagagttgagaattgggt
tgcttagttcccctcccgctgacagcttgatgaaacttccttccgggaaa
tttactctattctacctattatgtaggtcgaggaaatggtgacatagcat
gggcaccatttctcgagtgtcagacggtgcccagtcatgtgtatagtact
gcatggaatgcgtactggccatcctgcaagggagagtctattcttgaagc
catgagttcgtacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6403841_6404943
seq2: B6Ng01-072G14.b_45_1163 (reverse)

seq1  TAAAGGAAGGC-AGAAACGCTAACTAGA-GTTCTTTCCCAAGTTAT-TTA  47
      |||||||||||  |||||| |||||||| |||  ||||| |||||| |||
seq2  TAAAGGAAGGCGGGAAACGTTAACTAGAGGTTTCTTCCCCAGTTATATTA  50

seq1  CTCATGATGG-CCAAAG-TTACAAAGAGGAG-AGGGAAG-CACACC-ACA  92
       ||| ||||| |||||| ||||| ||  ||| ||||||| | |||| |||
seq2  TTCAGGATGGCCCAAAGTTTACATAGGAGAGAAGGGAAGCCCCACCAACA  100

seq1  -GCCA-GAGAAGATATGTTCACAACCA-TAAACCC-ACACACACGCTGGC  138
       |||| |||| || ||| ||||||||| ||||||| ||||||||||||||
seq2  GGCCAGGAGAGGA-ATGGTCACAACCATTAAACCCAACACACACGCTGGC  149

seq1  ATCCAAG-CCCGCCACGGTAAC-TGCTTTCC-TATTACGTACATTTACAT  185
      ||||||| |||||| ||| ||| |||||||| |||||||||| |||||||
seq2  ATCCAAGCCCCGCCCCGGGAACTTGCTTTCCATATTACGTACCTTTACAT  199

seq1  ATGCCGCTACGG-TCTATGTAAAAGTTGAAATACAATCAATAAAAAGTTA  234
      |||||||||||| ||||||||||||| ||||||||| |||||||||  ||
seq2  ATGCCGCTACGGTTCTATGTAAAAGTGGAAATACAACCAATAAAAAAGTA  249

seq1  ATGTTTGTAGTAATATGAACTCTTTCAACAATAACAGTAA-TAGTAATGG  283
      ||||||||| ||| |||||||||||||||||||||||||| |||||||||
seq2  ATGTTTGTAATAAAATGAACTCTTTCAACAATAACAGTAATTAGTAATGG  299

seq1  TAAT-AAAAGATAGCTTGCATGTAGGGATCAAACAAAGCAGGTTTTAGTT  332
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAAGATAGCTTGCATGTAGGGATCAAACAAAGCAGGTTTTAGTT  349

seq1  TTGCATCTTGGTGGTGCTGGTGAGAGAGAACTCTGATAAACGACCTTGAA  382
      ||||||||||| |||||||||||||||||||| | |||||||||||||||
seq2  TTGCATCTTGGGGGTGCTGGTGAGAGAGAACT-TTATAAACGACCTTGAA  398

seq1  TACGTCCACTTGATTACAATCTCAGTCTTAACAAACCACAGTTACTTAAG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCCACTTGATTACAATCTCAGTCTTAACAAACCACAGTTACTTAAG  448

seq1  ACATAACAAATGAGGAGACAGTCCCTCATTCTATCTTTAAGTTGTGTGTG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAAATGAGGAGACAGTCCCTCATTCTATCTTTAAGTTGTGTGTG  498

seq1  GGTATGTGGTTGTTCCTAAGACAATGTAAAAAAAAAAAAAAAAAAAAAAA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGGTTGTTCCTAAGACAATGTAAAAAAAAAAAAAAAAAAAAAAA  548

seq1  AAAAAAAGCAAGCAAGCAAACAAACAAACAAAAAACTAAGACATGCTGTG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCAAGCAAGCAAACAAACAAACAAAAAACTAAGACATGCTGTG  598

seq1  AGAACAGATCTGTCGTGGAGGGTCCTCCAGACATCTCTGTGTTGTCTCCC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATCTGTCGTGGAGGGTCCTCCAGACATCTCTGTGTTGTCTCCC  648

seq1  TAACTTTCCATCAGTTTGTAGCTATAAACATATCTAGCATGTGGTACAAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCCATCAGTTTGTAGCTATAAACATATCTAGCATGTGGTACAAA  698

seq1  CTTGGCTGTGGTCTCCCTTCTAAGCTCTCCCCACCTCTCCCAGATCTTCC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGTGGTCTCCCTTCTAAGCTCTCCCCACCTCTCCCAGATCTTCC  748

seq1  CTTTTCTTCACAATGCCAGCTGCCAGCGGTGGGGCATTCTTCTGGCTGAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCACAATGCCAGCTGCCAGCGGTGGGGCATTCTTCTGGCTGAA  798

seq1  TGCACACATACAACACCCCTAGAGCCTGTTTGTGTCTCAGCAAAGCAGAT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATACAACACCCCTAGAGCCTGTTTGTGTCTCAGCAAAGCAGAT  848

seq1  ATTGAAAACCTATGAAAGGGGCAACTTGAGGGGATAAGGAACCCAAATCA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAACCTATGAAAGGGGCAACTTGAGGGGATAAGGAACCCAAATCA  898

seq1  CACTAGTATTACCTGTTAGTTCATCCCTACCACAATTAAGTAGTAATACC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTATTACCTGTTAGTTCATCCCTACCACAATTAAGTAGTAATACC  948

seq1  TGCTGCCTATCAAACCACTAAGCCCTTTGCACGTGTGTAATCTCGCTGAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTATCAAACCACTAAGCCCTTTGCACGTGTGTAATCTCGCTGAA  998

seq1  TCCCTCTCGACCCAGCACAGGGCTGGGAGGATCACACTCACATACATTCC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCGACCCAGCACAGGGCTGGGAGGATCACACTCACATACATTCC  1048

seq1  ACCACGGACCAGGCACCATGTTGTCGGTCTTGAGAAACTCAAGATTCTCA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGACCAGGCACCATGTTGTCGGTCTTGAGAAACTCAAGATTCTCA  1098

seq1  AGAGAATCTTTTGAGGAATTC  1103
      |||||||||||||||||||||
seq2  AGAGAATCTTTTGAGGAATTC  1119


seq1: chr6_6267119_6268189
seq2: B6Ng01-072G14.g_68_1132

seq1  GAATTCACTGTCAGTCTTTTCCTGGAAAAATCTCCTCAGAGACACATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCAGTCTTTTCCTGGAAAAATCTCCTCAGAGACACATGAA  50

seq1  AGCTTTCTATTAAGAAGTAGACATGAATCTGATCTGTTTACGAAGAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTATTAAGAAGTAGACATGAATCTGATCTGTTTACGAAGAATCC  100

seq1  CAACATGGAATTTAACATGGAATTTATAATTTATTTAGTTTTTAACTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGAATTTAACATGGAATTTATAATTTATTTAGTTTTTAACTATT  150

seq1  TTCAATAATGTACATTGTTGTATATATATATACTTAACATCTGTATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAATGTACATTGTTGTATATATATATACTTAACATCTGTATATAT  200

seq1  CATTTAAAAGAGTAGCCATATGTATAGAGTTTGAGCAGGCATCTGACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAGAGTAGCCATATGTATAGAGTTTGAGCAGGCATCTGACAAA  250

seq1  TTCTCCACACATATATAACTTTGTAAAAACTAATAGTTTTAGCAAAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACACATATATAACTTTGTAAAAACTAATAGTTTTAGCAAAGTGT  300

seq1  GCTTTGAAACTTTTGGCAAACATATCAGAACACCGTGTTTGGTTTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAACTTTTGGCAAACATATCAGAACACCGTGTTTGGTTTAGTTT  350

seq1  GACTTAATAGCTATGATTTTTAAAATTGTTCAACTGTTCTTTTTTAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATAGCTATGATTTTTAAAATTGTTCAACTGTTCTTTTTTAGTAC  400

seq1  TGAGTTTAAAAGACAAAAATTTATATCAAGCTTCTCTGAAAATTCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTAAAAGACAAAAATTTATATCAAGCTTCTCTGAAAATTCTTTTC  450

seq1  TGTGTATCATACATAATTAAGCACTCATGTAAGTTTTTGAAGCTTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCATACATAATTAAGCACTCATGTAAGTTTTTGAAGCTTCAAAA  500

seq1  TTGGTCACTACGGACGGTCTATGATTTTGTTGTATTCGAGCCTATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCACTACGGACGGTCTATGATTTTGTTGTATTCGAGCCTATTTTTT  550

seq1  TCTCATCAAAGATGATTTCAACTATACAGCTCAAACTGTCAGTAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCAAAGATGATTTCAACTATACAGCTCAAACTGTCAGTAAAAAAA  600

seq1  AGGATCCCAGCTGTCTTAGATACGAGAGTCCTAGTGGAGACTTGATAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCCAGCTGTCTTAGATACGAGAGTCCTAGTGGAGACTTGATAGAC  650

seq1  TGTTCATAAAAACTCATTGTAAAGGTCTGGATATTTGCTGACCCTTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAAAAACTCATTGTAAAGGTCTGGATATTTGCTGACCCTTCTAT  700

seq1  CAGTGGGAAATAAGATCTCACCAACAGGGGCGCTGGCTTTCCATTAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAATAAGATCTCACCAACAGGGGCGCTGGCTTTCCATTAGTAG  750

seq1  AGGAAGAGCGGAGCCTGTCGTTCTCTACCCAACTGAGCTGGCATTACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGCGGAGCCTGTCGTTCTCTACCCAACTGAGCTGGCATTACTGC  800

seq1  TCAAGTCTACACAATGTAAGAATCTCTGGGCAAAGAGTTGAGAATTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTACACAATGTAAGAATCTCTGGGCAAAGAGTTGAGAATTGGGT  850

seq1  TGCTTAGTTCCCCTCCCGCTGACAGCTTGATGAAACTTCCTTCCGGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTTCCCCTCCCGCTGACAGCTTGATGAAACTTCCTTCCGGGAAA  900

seq1  TTTACTCTATTCTACCTAATTATGTAGGTCGAGGAAATGGTGACATAGCA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTACTCTATTCTACCT-ATTATGTAGGTCGAGGAAATGGTGACATAGCA  949

seq1  GGGGCACCATTTCCCGAGTGTCAGACGGTGCCCAGTCATGTGTATAGTAC  1000
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGGCACCATTTCTCGAGTGTCAGACGGTGCCCAGTCATGTGTATAGTAC  999

seq1  TGCATGGAATGCGTACT-GCCATCCTTGCAAGGGAAGAGTCCTATTCTTG  1049
      ||||||||||||||||| ||||||| |||||||| ||||| |||||||||
seq2  TGCATGGAATGCGTACTGGCCATCC-TGCAAGGG-AGAGT-CTATTCTTG  1046

seq1  AAAAGCCATGAGTTCGTTACAA  1071
        |||||||||||||| |||||
seq2  --AAGCCATGAGTTCG-TACAA  1065


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