BAC Information

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BAC

Clone NameB6Ng01-072J03
Chromosome6 (Build37)14 (Build37)
Map Location 18,835,441 - 18,835,96890,284,001 - 90,285,076
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072J03.bB6Ng01-072J03.g
ACCDH889952DH889953
length9861,066
definitionDH889952|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J03, 5' end.DH889953|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,441 - 18,835,968)(90,284,001 - 90,285,076)
sequence
gaattctttgttcagttctgagccccatttttaatggggttgttcgattt
tctgaagttcaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttccaaatctgttggtggtctt
tttgtcttattgagggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattcacgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagatccttgat
ccactttgatttgatcttagtacaaggagataagtatggatcaattcgca
ttcttctacatgataacaaccagttgtgacagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtttctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaagtgaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctctcctaggttttttgttattccagatga
atttgcaaattgctccttctgattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagatttgaagtttttatcatac
agatctttcacctccttagttagagtcacgccagatattttatactattt
gtgactattgagatggtgttgtttccctaatttctt
gaattcttttattgaatgaagagttcagtaaactaacaaaattggatcta
atctgtaaggagactttcaattaagcgttcttttttgccgaatgagaaaa
cagctgtaaccatacaccatctattagaaaaaaaataagtaaaataaaaa
tcaacatttgcattgtgtataatttttaaaacttaatttgtcaacttatt
atttatttatgttttatgtgacaagcttttaacaaatggtcaataaatgt
aacttggatataaaagctgtcttacttcaaatttgtgggacccaatgaat
atagataacaaactgcaatatttgtaatatttgtaacatttgtctaataa
aggatttaaaatcaataaatttcagtctttcttaacactatcagtagaat
aactctaaatttgatatggaacatattcatttggtaatgattttcacttt
tttttaattgtccgtggtagaattaagagcctcatatctattggctaagt
actctactaccaatctaaatgttgagccctgtgaataatatttaacaaat
ttccaaatacactcattttaaaataataaaatataaatgttgaagaaaga
acctatctgaaagtcatatttaatagataaagctggtttcagatgttggt
tgcaaattatttttgcttatgaaagatactacattgtaaataataagtta
aagaaaaaatgtaaaattaactttcaataaattatgttaactaatttctt
taacaaacctagaagtcctatattttgaaatatatgaagaaattaatgca
ttttatgttgtacatcttcaaatcataatattttcaaagtaaaataacaa
gctaaaggaattgatgttcaatttgataacttccagtgttatccagttaa
ttgatttaacctttctttcattctattgcatttccgggtttatactctat
ttgatggtaccaatttgaagtatgtttctttaattttggtatttactagg
gttatttgaaaattatagtgtttaaccaatagctgaaattatcagtctcc
taaattggtcagtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835441_18835968
seq2: B6Ng01-072J03.b_44_571 (reverse)

seq1  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGT  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  150
      ||||||||||||||||| |||||||||||| |||| ||||||||||||||
seq2  CACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCATACTTATC  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200
      ||| ||||||||| ||||||| |||||||||||||| |||||||||||||
seq2  TCCTTGTACTAAGATCAAATCAAAGTGGATCAAGGATCTTCACATAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250

seq1  ATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  299
      ||||||| ||||||||| ||||||||||||||||||||||| ||||||||
seq2  ATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  349
       || | | |||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATCGTGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  350

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  399
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  AGGCAAAAGACACCCTCAATAAGACAAAAAGACCACCAACAGATTTGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  450

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  499
      ||||||||||||||||||| ||||||||||||| || ||||||||||| |
seq2  TAAAGAACTCAAGAAGGTGAACTTCAGAAAATCGAACAACCCCATTAA-A  499

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  528
      |||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr14_90284001_90285076
seq2: B6Ng01-072J03.g_68_1133

seq1  GAATTCTTTTATTGAATGAAGAGTTCAGTAAACTAACAAAATTGGATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTGAATGAAGAGTTCAGTAAACTAACAAAATTGGATCTA  50

seq1  ATCTGTAAGGAGACTTTCAATTAAGCGTTCTTTTTTGCCGAATGAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAGGAGACTTTCAATTAAGCGTTCTTTTTTGCCGAATGAGAAAA  100

seq1  CAGCTGTAACCATACACCATCTATTAGAAAAAAAATAAGTAAAATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAACCATACACCATCTATTAGAAAAAAAATAAGTAAAATAAAAA  150

seq1  TCAACATTTGCATTGTGTATAATTTTTAAAACTTAATTTGTCAACTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTTGCATTGTGTATAATTTTTAAAACTTAATTTGTCAACTTATT  200

seq1  ATTTATTTATGTTTTATGTGACAAGCTTTTAACAAATGGTCAATAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATGTTTTATGTGACAAGCTTTTAACAAATGGTCAATAAATGT  250

seq1  AACTTGGATATAAAAGCTGTCTTACTTCAAATTTGTGGGACCCAATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGATATAAAAGCTGTCTTACTTCAAATTTGTGGGACCCAATGAAT  300

seq1  ATAGATAACAAACTGCAATATTTGTAATATTTGTAACATTTGTCTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAACAAACTGCAATATTTGTAATATTTGTAACATTTGTCTAATAA  350

seq1  AGGATTTAAAATCAATAAATTTCAGTCTTTCTTAACACTATCAGTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTAAAATCAATAAATTTCAGTCTTTCTTAACACTATCAGTAGAAT  400

seq1  AACTCTAAATTTGATATGGAACATATTCATTTGGTAATGATTTTCACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAAATTTGATATGGAACATATTCATTTGGTAATGATTTTCACTTT  450

seq1  TTTTTAATTGTCCGTGGTAGAATTAAGAGCCTCATATCTATTGGCTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTGTCCGTGGTAGAATTAAGAGCCTCATATCTATTGGCTAAGT  500

seq1  ACTCTACTACCAATCTAAATGTTGAGCCCTGTGAATAATATTTAACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTACCAATCTAAATGTTGAGCCCTGTGAATAATATTTAACAAAT  550

seq1  TTCCAAATACACTCATTTTAAAATAATAAAATATAAATGTTGAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATACACTCATTTTAAAATAATAAAATATAAATGTTGAAGAAAGA  600

seq1  ACCTATCTGAAAGTCATATTTAATAGATAAAGCTGGTTTCAGATGTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCTGAAAGTCATATTTAATAGATAAAGCTGGTTTCAGATGTTGGT  650

seq1  TGCAAATTATTTTTGCTTATGAAAGATACTACATTGTAAATAATAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTATTTTTGCTTATGAAAGATACTACATTGTAAATAATAAGTTA  700

seq1  AAGAAAAAATGTAAAATTAACTTTCAATAAATTATGTTAACTAATTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAATGTAAAATTAACTTTCAATAAATTATGTTAACTAATTTCTT  750

seq1  TAACAAACCTAGAAGTCCTATATTTTGAAATATATGAAGAAATTAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACCTAGAAGTCCTATATTTTGAAATATATGAAGAAATTAATGCA  800

seq1  TTTTATGTTGTACATCTTCAAATCATAATATTTTCAAAGTAAAATAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTGTACATCTTCAAATCATAATATTTTCAAAGTAAAATAACAA  850

seq1  GCTAAAGGAATTGATGTTCAATTTGATAACTTCCAGTGTTATCCAGTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGGAATTGATGTTCAATTTGATAACTTCCAGTGTTATCCAGTTAA  900

seq1  TTGATTTAACCTTTCTTTTCATTCTATTGCATTTTCGGGTTTTATACTCT  950
      ||||||||||||||| |||||||||||||||||| |||| ||||||||||
seq2  TTGATTTAACCTTTC-TTTCATTCTATTGCATTTCCGGG-TTTATACTCT  948

seq1  ATTTGATTGGTACCAATTTGAAGTATGTTTCTTTAATTTTGGTATTTTAC  1000
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTTGA-TGGTACCAATTTGAAGTATGTTTCTTTAATTTTGGTA-TTTAC  996

seq1  TTAAGGGTTAATTTGAAAATTATAGTGTTTAAACAAATAGCTGATATTAT  1050
      |  |||||| |||||||||||||||||||| ||| ||||||||| |||||
seq2  T--AGGGTT-ATTTGAAAATTATAGTGTTT-AACCAATAGCTGAAATTAT  1042

seq1  CAGTCTCTAAAAATTTGTTCAGTAAT  1076
      |||||||  |||  ||| ||||||||
seq2  CAGTCTCCTAAA--TTGGTCAGTAAT  1066