BAC Information

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BAC

Clone NameB6Ng01-072J04
Chromosome6 (Build37)
Map Location 21,897,846 - 21,958,956
singlet/doubletdoublet
Overlap geneIng3, A430107O13Rik
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358
Downstream geneLOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072J04.bB6Ng01-072J04.g
ACCDH889954DH889955
length1,1611,166
definitionDH889954|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J04, 5' end.DH889955|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,958,439 - 21,958,956)(21,897,846 - 21,899,031)
sequence
gaattcctgtcccaaatcctttctacctccccacccatgcaactcaatgc
cctttctttctttctctctttagaaaacaaatgaacaaaaatccaaacca
gaaaaaaaatgaagaaacacagacacacaaaacatataaaaatacaaagt
cagcgaccataacataaaattaaagaaagaaataaaatgcacaagcaaag
caatatgagaaaaaaagtctacagatataccattgagatcatctggtgtt
ggtcttcgattaccgggcatagggcctgttcttaagtgtgttttatatgc
ccaggactcctttggagaaaaccattttgtcctttgcaagcagatgtcaa
ttgtagatagattctgggatggaagcccgcatctatttttccctgtcagt
actgggaccccttcttgcttgaacctgtgcaggccctgcgcttgctggtg
cagttttttgtgagttcacaattgtagcagtcctgtcaggccttgaagaa
actgttttcttgcggtgatccattgcccaagtccatacctggcttgaaat
tctcttctccatagcttcctgaacccataggggaggaactgcaagaagat
acgccatttaggactgactgttctaaaatagctcactttctgtacattgt
ctacttgtaggttccatgtgagtgttcatctgttgcaagaagcagcattt
ctgatgctggctgagcaagacactgacccacggatatagtagaatgttgt
taggaatcactttattgctacgttcctttagcagaatagcgttcagtttt
ccttaagacccatggtctatctagtcttaggttcttagccacctaagcaa
ccagcccaagttctacttcatggagtagccttaaatccaatcagagagtg
tgtggttgcttccacaactattgtgctgagtgtacatttttatacgtatg
agtgtttccctgcatgtatgtttgtgtgtactacatctatacctggtgtc
cctgggggccagaaaagggcacttaagtccctagaatcggagtgcacgtg
gttttagctgctgtgacgtggcttgggacaattcgggtcctattatgcag
cgtgtgctttccctacttactgtccagctccacactgttgaaactgctat
gcactactgaa
gaattcctgcttgaacagctatgcatccagccactgtaagaagacaacgt
caaaaatcagttctcaaggaggagtctaatagaagacaggatcccaagag
gaatagtccctatgtaagagtaggtgagcaataaactcttttcatataag
aggccactaagaaaacatgcttgtcttggacttaagaggccaataaggaa
gaaaaagtctcccttgagagtatataatgaagtattttcattacaggttc
caattcaatctatcggtgcaatagaataaacctcaactacataacttaat
ttgaccctaagtttgatggtgtcttgcagcaaagttgcagagtcaaatgc
taatattctctagcaaaactcgattttaactccagcagtgaaatttctct
atatttataaccctggaaaagtgaattcagagttaaaaaccccaacacag
atgaaattaggcactgtaaacaaacgtggctgcttttgaacaaagagcac
aaacagataaatagttttagtacaaaatttaaattaaacaggtgtagact
aaatatatttaacattcaagtaataagaaaatggctttaaaagaagacaa
aagagaatacaagtatgtcattgtaaataaaattgtaacataaaaatatt
gagtagtgaataaaatgtgtcatactgatttattttcttttgtatgagaa
agggtcttccataatctgggttggcttctaattgcctatgttgccaaagc
tcacactcctaatcctcctgtctcaattctcccacttaggggattacagg
tgtgtggtgttataatccaccagatagtctaagaagggatcattttcccc
aaaacacagaagcatttagtgtacgaatttttatgaaaggcatttttaag
atagaaacggggcggtgatacacttgttataccaccagtgaacatttgct
agggttattaaaaagcctgcccagaactataaaacattaacccagctact
acccaacataaatttaatcattgttagtatatgccagcaatgcataaatc
acctataattatggtgggttgtattatcatctatattaccttatgcggat
gcattggaacgtgtttacaatgaacacagaataccgcaaacatactgcta
ctgaatacaattgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21958439_21958956
seq2: B6Ng01-072J04.b_701_1205 (reverse)

seq1  TTCAGTAGTGCATAGCAGTTTTTCAAACCAGTGTGCAGCTGGACAGT-AG  49
      ||||||||||||||||||  ||||||  ||||||| ||||||||||| ||
seq2  TTCAGTAGTGCATAGCAG--TTTCAA--CAGTGTGGAGCTGGACAGTAAG  46

seq1  TAGTGAAAAGCACACGCTGGCATTACATAGGACCCGGATTTGGTCCCAAG  99
      ||| | |||||||||||| ||||   |||||||||| |||  ||||||||
seq2  TAG-GGAAAGCACACGCT-GCAT--AATAGGACCCGAATT--GTCCCAAG  90

seq1  CACCGTCACAGCAGCTTAAAACCACGTGCAACTCCGATTCTAGGGGACTT  149
      |  |||||||||||| ||||||||||||| |||||||||||| |||||||
seq2  CCACGTCACAGCAGC-TAAAACCACGTGC-ACTCCGATTCTA-GGGACTT  137

seq1  AAGTGCCCTTTTCTGGCCCCCAGGGACACCAGGTATAGATGTAGTACACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCCTTTTCTGGCCCCCAGGGACACCAGGTATAGATGTAGTACACA  187

seq1  CAAACATACATGCAGGGAAACACTCATACGTATAAAAATGTACACTCAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACATGCAGGGAAACACTCATACGTATAAAAATGTACACTCAGC  237

seq1  ACAATAGTTGTGGAAGCAACCACACACTCTCTGATTGGATTTAAGGCCTA  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAATAGTTGTGGAAGCAACCACACACTCTCTGATTGGATTTAAGG-CTA  286

seq1  CTCCATGAAGTAGAACTTGGGCTGGTTGCTTAGGTGGCTAAGAACCTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAAGTAGAACTTGGGCTGGTTGCTTAGGTGGCTAAGAACCTAAG  336

seq1  ACTAGATAGACCATGGGTCTTAAGGAAAACTGAACGCTATTCTGCTAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAGACCATGGGTCTTAAGGAAAACTGAACGCTATTCTGCTAAAG  386

seq1  GAACGTAGCAATAAAGTGATTCCTAACAACATTCTACTATATCCGTGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTAGCAATAAAGTGATTCCTAACAACATTCTACTATATCCGTGGGT  436

seq1  CAGTGTCTTGCTCAGCCAGCATCAGAAATGCTGCTTCTTGCAACAGATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTTGCTCAGCCAGCATCAGAAATGCTGCTTCTTGCAACAGATGA  486

seq1  ACACTCACATGGAACCTAC  518
      |||||||||||||||||||
seq2  ACACTCACATGGAACCTAC  505

seq1: chr6_21897846_21899031
seq2: B6Ng01-072J04.g_65_1230

seq1  GAATTCCTGCTTGAACAGCTATGCATCCAGCCACTGTAAGAAGACAACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTGAACAGCTATGCATCCAGCCACTGTAAGAAGACAACGT  50

seq1  CAAAAATCAGTTCTCAAGGAGGAGTCTAATAGAAGACAGGATCCCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCAGTTCTCAAGGAGGAGTCTAATAGAAGACAGGATCCCAAGAG  100

seq1  GAATAGTCCCTATGTAAGAGTAGGTGAGCAATAAACTCTTTTCATATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTCCCTATGTAAGAGTAGGTGAGCAATAAACTCTTTTCATATAAG  150

seq1  AGGCCACTAAGAAAACATGCTTGTCTTGGACTTAAGAGGCCAATAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTAAGAAAACATGCTTGTCTTGGACTTAAGAGGCCAATAAGGAA  200

seq1  GAAAAAGTCTCCCTTGAGAGTATATAATGAAGTATTTTCATTACAGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTCTCCCTTGAGAGTATATAATGAAGTATTTTCATTACAGGTTC  250

seq1  CAATTCAATCTATCGGTGCAATAGAATAAACCTCAACTACATAACTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATCTATCGGTGCAATAGAATAAACCTCAACTACATAACTTAAT  300

seq1  TTGACCCTAAGTTTGATGGTGTCTTGCAGCAAAGTTGCAGAGTCAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTAAGTTTGATGGTGTCTTGCAGCAAAGTTGCAGAGTCAAATGC  350

seq1  TAATATTCTCTAGCAAAACTCGATTTTAACTCCAGCAGTGAAATTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTCTAGCAAAACTCGATTTTAACTCCAGCAGTGAAATTTCTCT  400

seq1  ATATTTATAACCCTGGAAAAGTGAATTCAGAGTTAAAAACCCCAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAACCCTGGAAAAGTGAATTCAGAGTTAAAAACCCCAACACAG  450

seq1  ATGAAATTAGGCACTGTAAACAAACGTGGCTGCTTTTGAACAAAGAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTAGGCACTGTAAACAAACGTGGCTGCTTTTGAACAAAGAGCAC  500

seq1  AAACAGATAAATAGTTTTAGTACAAAATTTAAATTAAACAGGTGTAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATAAATAGTTTTAGTACAAAATTTAAATTAAACAGGTGTAGACT  550

seq1  AAATATATTTAACATTCAAGTAATAAGAAAATGGCTTTAAAAGAAGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTAACATTCAAGTAATAAGAAAATGGCTTTAAAAGAAGACAA  600

seq1  AAGAGAATACAAGTATGTCATTGTAAATAAAATTGTAACATAAAAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATACAAGTATGTCATTGTAAATAAAATTGTAACATAAAAATATT  650

seq1  GAGTAGTGAATAAAATGTGTCATACTGATTTATTTTCTTTTGTATGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTGAATAAAATGTGTCATACTGATTTATTTTCTTTTGTATGAGAA  700

seq1  AGGGTCTTCCATAATCTGGGTTGGCTTCTAATTGCCTATGTTGCCAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTCCATAATCTGGGTTGGCTTCTAATTGCCTATGTTGCCAAAGC  750

seq1  TCACACTCCTAATCCTCCTGTCTCAATTCTCCCACTTAGGGGATTACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTCCTAATCCTCCTGTCTCAATTCTCCCACTTAGGGGATTACAGG  800

seq1  TGTGTGGTGTTATAATCCACCAGATAGTCTAAGAAGGGATCATTTTCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTGTTATAATCCACCAGATAGTCTAAGAAGGGATCATTTTCCCC  850

seq1  AAAACACAGAAGCATTTAGTGTACGAATTTTTATGAAAGGCATTTTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAGAAGCATTTAGTGTACGAATTTTTATGAAAGGCATTTTTAAG  900

seq1  ATAGAAACGGGGCGGTGATACACTTGTTATACCACCAGTGAACATTTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACGGGGCGGTGATACACTTGTTATACCACCAGTGAACATTTGCT  950

seq1  AGGGTTATTAAAAAAGCCTGCCCAGAACTAT-AAACATTAACCCAGCTAC  999
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  AGGGTTATT-AAAAAGCCTGCCCAGAACTATAAAACATTAACCCAGCTAC  999

seq1  TTACCCAACATAAATTTAAATCATTGTTAGTATATGCCAGCAATGCATTA  1049
       |||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  -TACCCAACATAAATTT-AATCATTGTTAGTATATGCCAGCAATGCA-TA  1046

seq1  AATCA-CTATAATTTATGGTTGGTTGTTATTTATTCATCTATTTATTTAC  1098
      ||||| |||||| ||||||| ||||| ||||   ||||||||    ||||
seq2  AATCACCTATAA-TTATGGTGGGTTG-TATT--ATCATCTAT---ATTAC  1089

seq1  TTTATTGCGGATGCATTTGAACAGTTGTTTTACAATGAACACAAGATACA  1148
       ||| |||||||||||| |||| ||   |||||||||||||||  ||  |
seq2  CTTA-TGCGGATGCATTGGAAC-GT--GTTTACAATGAACACAGAAT--A  1133

seq1  CCGCAAAACATAACTGGCTACTGAATACTATTTTGGGT  1186
      |||| |||||| ||| |||||||||||| |  ||||||
seq2  CCGC-AAACAT-ACT-GCTACTGAATACAA--TTGGGT  1166