BAC Information

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BAC

Clone NameB6Ng01-072L18
Chromosome6 (Build37)
Map Location 6,536,079 - 6,727,488
singlet/doubletdoublet
Overlap geneLOC545826
Upstream geneDync1i1, Slc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1
Downstream geneDlx6as, Dlx5, Acn9, EG667500, Tac1, LOC667511, Asns
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072L18.bB6Ng01-072L18.g
ACCDH890066DH890067
length1,1891,107
definitionDH890066|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L18, 5' end.DH890067|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,726,290 - 6,727,488)(6,536,079 - 6,537,200)
sequence
gaattccaagtcagatccaggacagcgctgagtctatacttccaggcaat
tcccagggaaagaagcaacactgaaagactgcaaaaaaagtactcttcaa
gtagggtacacacatgacaggaacaactggagctaagatttccacagcag
aacctggcattccaagtttcttcttgactgcagtcatcatggtgaaagca
tttgaccaggtcgccaccgttttttgtatatgtgatttctcctgtgctgt
taacagcctttctctatctcaacaaaggtaaacaggatcaaagaaaggtt
tgtaaaaggagaaaagcacctgattttaaagaaaatgcagtaaagcatcc
ctggcctagtctaagagatgtcttcagaagtaatttgcttaaaacaacta
tttttctcacatattttgacaacagcttaaaagttttaatggaaaataga
ttttttaaacccacaatctcatcatatattgtatatgtgagtttttattt
tcaagaacttgtgaaaaagcaaacaaaccaaaggccccatagtgttcagt
cggtcactgatggaaatgtcactgtccaatctagtcaggcgatgcctgca
gacacaaaggggttccttgggctttttcaggtgtgactggtctgaccttt
aacctatgtcagttctttgactgaattgatttcagtctgtatagctaata
tctttggaattatgcttggttttcagatttttttttataagcagttttct
taccagtgaaatgtgctagggcggatttgtgatactcctagaacccacgg
atgcttgctttgaattggctgcatgctaaaggtggtttcaattttgattc
tctcttatttttattgcttccccatacttatgttcctaactataattttc
cactcctactcaaaaatacacagccctcacttaggagctgtatttgttga
atatttttttcttggtctttttccccatttcttgggctttagcttgctgg
ggcctgctctgaggtagttcatattttagtttacccatctgttgaatatc
tttcacttgccttgaagattcctttgatggcatacatagctcatatgtca
tctaactatactaccaaaaattgtctcaatgtctgtatgctggatcaaaa
acttcaatgtggtgcatcaggtcaccgggatgagtagct

gaattcttgttgtcaggagtattagatttgttgagtgggtgcccaaagga
atctctgaagatatttgaaacctcactaaacaaagccatggacattgtat
tgtgaagcacaagacttaatggcaagaggggaagcccggatcaacgacaa
agacttttccagctctaatttctactattccatagttctgtgaatagttg
ctaaattgcttgatcaacccagacaaatagaactcaacacaagaacaaaa
cctcagacaaaacaataaagccagccaaaattgaaacacgccccaaaaga
taaaaaaataaaaagaaaaatccctaaaccttgcatcatacaccatacat
gacaaatttaggccctggcagtctgcccagaagaataaattccaaaagac
aggatccctagctagcaagcccaacaaacaggttgggagagtttcactgg
cttgcaaaatgtacctgattaaaatactatagcagggtatagcagggtaa
atagtgacagaggaaagaaacatagattcagaaccttctttaaccccgaa
ttaatttgttcattcattgtgcaagggtgtactgggtgcctactgtctgt
caatcactactctaggactgagcatgtgagtaaggagaacagacaagaga
ctcgccctttggagtttacatcttggtgagagaaacggtaatccatcgcc
atcatctgccgtatctttagttaggaggtaacaatgccaagatagggtag
gttaaacaagaggagaaacgggggctggagtgtgtaaaaatggagaccag
aactcgtgggaagggagagggcctaagcaagactagaaggaaatgcagag
accatcaaagacattttaaaggaagaacattccaaggaaggagacccctc
aaacctgctttgtttgaggacaggatgaggccaccgtggggggcacatta
agacgagcatgagtcagagatgcgttctggctatgacaagacttgtcttt
tcctttcagtaatttcccaaaactttgcttgaaaaatgaaagcttagtaa
ccatgtattctaatcaccaccatgaaggtaggtgcaccactcctgaacca
ctactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6726290_6727488
seq2: B6Ng01-072L18.b_43_1231 (reverse)

seq1  AGCTACCTCATTCCCCGGTTGACCTGATGCACACAATTGAGTTTTTTTGA  50
      ||||| |||||  ||||| |||||||||||||   |||||  |||||   
seq2  AGCTA-CTCAT--CCCGG-TGACCTGATGCACCACATTGAAGTTTTT--G  44

seq1  ATCTAGCATTACAGACATTGAGACATATTTTTGTAGTATAGTTTATGATG  100
      ||| |||| ||||||||||||||||  |||| |||||||||||   ||||
seq2  ATCCAGCA-TACAGACATTGAGACAATTTTTGGTAGTATAGTT--AGATG  91

seq1  ACATTTATGAGCTATGTATG-CATCATAGAAATCTTTCAAGGCAAGTG-A  148
      |||  ||||||||||||||| ||||| || |||| ||||||||||||| |
seq2  ACA--TATGAGCTATGTATGCCATCAAAGGAATC-TTCAAGGCAAGTGAA  138

seq1  AGATAATCCAACAGATGGGTAAACTAAAATATGGACTACCTCAGAGCAGG  198
      |||| || ||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAT-ATTCAACAGATGGGTAAACTAAAATATGAACTACCTCAGAGCAGG  187

seq1  CCCCAGCAAGCTAAAGCCCAAGAAATGGGGAAAAAGACCAAG-AAAAAAT  247
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCCAGCAAGCTAAAGCCCAAGAAATGGGGAAAAAGACCAAGAAAAAAAT  237

seq1  ATTCAACAAATACAGCTCCTAAGTGAGGGCTGTGTATTTTTGAGTAGGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAAATACAGCTCCTAAGTGAGGGCTGTGTATTTTTGAGTAGGAG  287

seq1  TGGAAAATTATAGTTAGGAACATAAGTATGGGGAAGCAATAAAAATAAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTATAGTTAGGAACATAAGTATGGGGAAGCAATAAAAATAAGA  337

seq1  GAGAATCAAAATTGAAACCACCTTTAGCATGCAGCCAATTCAAAGCAAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCAAAATTGAAACCACCTTTAGCATGCAGCCAATTCAAAGCAAGC  387

seq1  ATCCGTGGGTTCTAGGAGTATCACAAATCCGCCCTAGCACATTTCACTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTGGGTTCTAGGAGTATCACAAATCCGCCCTAGCACATTTCACTGG  437

seq1  TAAGAAAACTGCTTATAAAAAAAAATCTGAAAACCAAGCATAATTCCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACTGCTTATAAAAAAAAATCTGAAAACCAAGCATAATTCCAAA  487

seq1  GATATTAGCTATACAGACTGAAATCAATTCAGTCAAAGAACTGACATAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAGCTATACAGACTGAAATCAATTCAGTCAAAGAACTGACATAGG  537

seq1  TTAAAGGTCAGACCAGTCACACCTGAAAAAGCCCAAGGAACCCCTTTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTCAGACCAGTCACACCTGAAAAAGCCCAAGGAACCCCTTTGTG  587

seq1  TCTGCAGGCATCGCCTGACTAGATTGGACAGTGACATTTCCATCAGTGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGCATCGCCTGACTAGATTGGACAGTGACATTTCCATCAGTGAC  637

seq1  CGACTGAACACTATGGGGCCTTTGGTTTGTTTGCTTTTTCACAAGTTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGAACACTATGGGGCCTTTGGTTTGTTTGCTTTTTCACAAGTTCTT  687

seq1  GAAAATAAAAACTCACATATACAATATATGATGAGATTGTGGGTTTAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAAACTCACATATACAATATATGATGAGATTGTGGGTTTAAAA  737

seq1  AATCTATTTTCCATTAAAACTTTTAAGCTGTTGTCAAAATATGTGAGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTTCCATTAAAACTTTTAAGCTGTTGTCAAAATATGTGAGAAA  787

seq1  AATAGTTGTTTTAAGCAAATTACTTCTGAAGACATCTCTTAGACTAGGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTGTTTTAAGCAAATTACTTCTGAAGACATCTCTTAGACTAGGCC  837

seq1  AGGGATGCTTTACTGCATTTTCTTTAAAATCAGGTGCTTTTCTCCTTTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCTTTACTGCATTTTCTTTAAAATCAGGTGCTTTTCTCCTTTTA  887

seq1  CAAACCTTTCTTTGATCCTGTTTACCTTTGTTGAGATAGAGAAAGGCTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTTCTTTGATCCTGTTTACCTTTGTTGAGATAGAGAAAGGCTGT  937

seq1  TAACAGCACAGGAGAAATCACATATACAAAAAACGGTGGCGACCTGGTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCACAGGAGAAATCACATATACAAAAAACGGTGGCGACCTGGTCA  987

seq1  AATGCTTTCACCATGATGACTGCAGTCAAGAAGAAACTTGGAATGCCAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTCACCATGATGACTGCAGTCAAGAAGAAACTTGGAATGCCAGG  1037

seq1  TTCTGCTGTGGAAATCTTAGCTCCAGTTGTTCCTGTCATGTGTGTACCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGTGGAAATCTTAGCTCCAGTTGTTCCTGTCATGTGTGTACCCT  1087

seq1  ACTTGAAGAGTACTTTTTTTGCAGTCTTTCAGTGTTGCTTCTTTCCCTGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGAGTACTTTTTTTGCAGTCTTTCAGTGTTGCTTCTTTCCCTGG  1137

seq1  GAATTGCCTGGAAGTATAGACTCAGCGCTGTCCTGGATCTGACTTGGAAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCCTGGAAGTATAGACTCAGCGCTGTCCTGGATCTGACTTGGAAT  1187

seq1  TC  1199
      ||
seq2  TC  1189


seq1: chr6_6536079_6537200
seq2: B6Ng01-072L18.g_66_1172

seq1  GAATTCTTGTTGTCAGGAGTATTAGATTTGTTGAGTGGGTGCCCAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGTCAGGAGTATTAGATTTGTTGAGTGGGTGCCCAAAGGA  50

seq1  ATCTCTGAAGATATTTGAAACCTCACTAAACAAAGCCATGGACATTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAAGATATTTGAAACCTCACTAAACAAAGCCATGGACATTGTAT  100

seq1  TGTGAAGCACAAGACTTAATGGCAAGAGGGGAAGCCCGGATCAACGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCACAAGACTTAATGGCAAGAGGGGAAGCCCGGATCAACGACAA  150

seq1  AGACTTTTCCAGCTCTAATTTCTACTATTCCATAGTTCTGTGAATAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCCAGCTCTAATTTCTACTATTCCATAGTTCTGTGAATAGTTG  200

seq1  CTAAATTGCTTGATCAACCCAGACAAATAGAACTCAACACAAGAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGCTTGATCAACCCAGACAAATAGAACTCAACACAAGAACAAAA  250

seq1  CCTCAGACAAAACAATAAAGCCAGCCAAAATTGAAACACGCCCCAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACAAAACAATAAAGCCAGCCAAAATTGAAACACGCCCCAAAAGA  300

seq1  TAAAAAAATAAAAAGAAAAATCCCTAAACCTTGCATCATACACCATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAAAAGAAAAATCCCTAAACCTTGCATCATACACCATACAT  350

seq1  GACAAATTTAGGCCCTGGCAGTCTGCCCAGAAGAATAAATTCCAAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTTAGGCCCTGGCAGTCTGCCCAGAAGAATAAATTCCAAAAGAC  400

seq1  AGGATCCCTAGCTAGCAAGCCCAACAAACAGGTTGGGAGAGTTTCACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCCTAGCTAGCAAGCCCAACAAACAGGTTGGGAGAGTTTCACTGG  450

seq1  CTTGCAAAATGTACCTGATTAAAATACTATAGCAGGGTATAGCAGGGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAATGTACCTGATTAAAATACTATAGCAGGGTATAGCAGGGTAA  500

seq1  ATAGTGACAGAGGAAAGAAACATAGATTCAGAACCTTCTTTAACCCCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGACAGAGGAAAGAAACATAGATTCAGAACCTTCTTTAACCCCGAA  550

seq1  TTAATTTGTTCATTCATTGTGCAAGGGTGTACTGGGTGCCTACTGTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGTTCATTCATTGTGCAAGGGTGTACTGGGTGCCTACTGTCTGT  600

seq1  CAATCACTACTCTAGGACTGAGCATGTGAGTAAGGAGAACAGACAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACTACTCTAGGACTGAGCATGTGAGTAAGGAGAACAGACAAGAGA  650

seq1  CTCGCCCTTTGGAGTTTACATCTTGGTGAGAGAAACGGTAATCCATCGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCCTTTGGAGTTTACATCTTGGTGAGAGAAACGGTAATCCATCGCC  700

seq1  ATCATCTGCCGTATCTTTAGTTAGGAGGTAACAATGCCAAGATAGGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGCCGTATCTTTAGTTAGGAGGTAACAATGCCAAGATAGGGTAG  750

seq1  GTTAAACAAGAGGAGAAACGGGGGCTGGAGTGTGTAAAAATGGAGACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACAAGAGGAGAAACGGGGGCTGGAGTGTGTAAAAATGGAGACCAG  800

seq1  AACTCGTGGGAAGGGAGAGGGCCTAAGCAAGACTAGAAGGAAATGCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGTGGGAAGGGAGAGGGCCTAAGCAAGACTAGAAGGAAATGCAGAG  850

seq1  ACCATCAAAGACATTTTAAAGGAAGAACATTCCAAGGAAGGAGACCCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAAAGACATTTTAAAGGAAGAACATTCCAAGGAAGGAGACCCCTC  900

seq1  AAACCTGCTTTGTTTGAGGAACAAGAATGAGGCCACCGTGGGGGGCACAT  950
      ||||||||||||||||||||   || ||||||||||||||||||||||||
seq2  AAACCTGCTTTGTTTGAGGA--CAGGATGAGGCCACCGTGGGGGGCACAT  948

seq1  TAAGACGAGCATGAGGCCAGAGATGCGTTCTGGCTATGACAAAGACCTTG  1000
      |||||||||||||| | ||||||||||||||||||||||| |||| ||||
seq2  TAAGACGAGCATGA-GTCAGAGATGCGTTCTGGCTATGAC-AAGA-CTTG  995

seq1  TCTTTTCCTTTCAGTAAATTTCCCAAAACTTTTGCTTTGAAAATATGAAA  1050
      ||||||||||||||| ||||||||||||| ||||| ||||||| ||| ||
seq2  TCTTTTCCTTTCAGT-AATTTCCCAAAAC-TTTGC-TTGAAAA-ATG-AA  1040

seq1  AGCTTAGTAACCATGTTAATTCATAATTCACCAACCATG-AGGTAGGTGC  1099
      ||||||||||||||||  |||| ||| ||||| |||||| ||||||||||
seq2  AGCTTAGTAACCATGT--ATTC-TAA-TCACC-ACCATGAAGGTAGGTGC  1085

seq1  CACACTCCCTGAACCACTACTTA  1122
        |||| ||||||||||||||||
seq2  ACCACT-CCTGAACCACTACTTA  1107


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