BAC Information

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BAC

Clone NameB6Ng01-072M02
Chromosome6 (Build37)
Map Location 13,585,298 - 13,586,480
singlet/doubletsinglet
Overlap geneB630005N14Rik
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168
Downstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072M02.bB6Ng01-072M02.g
ACCDH890080DH890081
length1,1601,159
definitionDH890080|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M02, 5' end.DH890081|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctatgtaccccattatttaatggggttatttgaat
ttctggagttcagcttctttgtatatgttagatattagtcccctatcaga
tttaggattggtaaaatttttttcccaatctgttggtggcctttttgtct
tattaacggtatcttttgccctacagaagctttggaattttatgaggtac
catttgtcaattcttgatcttacagcacaggcccttgctgttctgtttag
gaatttttcccctgtgcccatatcttcaaaggtttccccactttctcctc
tataactttcagtgtctctggttttaagtggagttctttcatccacttag
acttgagctttttacaaggagataagaatggatcaatttgcattcttcta
tatgataattgccagttgtgccaacaccatttgttgaaaatgctgttttt
tttttcctggaaatggaatatttggtttctccatctatgataatttagag
ttttgctgggtatagtagcctgggctggcaattgtgttctcttaaggtct
gtataacatctgtccaggctcttctggctttcatagtttctggtgagaag
tctggagtaattctaatatgcctttatatgttacttgatctttttcctta
ctgcttttaatattctgtctttatttagtgcatttaatgttttgattatt
atgtgtcgggaggaatttcttttctggtccagtctatttggagttctgta
ggcttcttgtatgttcatggacatctctttctttatgtatgggaagtttt
cttctataattttgttgaagatatttgctggccctttaagttgaaattct
tcattctcatctactcctattatctgtaggtttggtcttctcattgtgtc
ctggatttcctggacgttttgagttaggatcttttttgcattttgcattt
tttccgtagttgtgtccatgttcccaatgaatcttctgcacctgagattc
cctctccattccctggaattcgttgctgatgctcccatcctatgttctga
ttcttcctgagatctattcccgagtgtctccttgtttctcctggttcact
tccatttgaactgaaagttgtcattcaaccgctagttgttcggaatctaa
gaatggtctc
gaattcagctgtacatacaaggctggacccatcagtcttcaaagcagctc
caaccccaagtccacacaggtgaccctagtcaacccaaagggacaacaaa
gaaagaaaatgacaggagagacttgaatgtagcaaagagagtagtatgaa
ggggtagggtaaacaggaagaagggagaagagagagctttcaaaatgtat
catacacatgtgtgaaagaacaaattggaaaataagtaggcaacgattaa
aactgcaatgctatattttattcgttcttcaacccaattctgtaacctat
gcatacatctggacaagagcactagagctactttctgctttagtattttg
ttaatgtgattatgttaacattaaaatatttatttagatggttcaggaca
ctgaaaagataagtcagcacacatacaggaatacaattaatatgtactta
gccagctgtgtaaaactcctaatctatatttcctagagctgtttctctta
actttccagttaccagcagatttgtaagattgacattagcctgctataac
cccgccccacccccagttgaggtccacatcactgacatttagcttttacc
cttaacagtctacaaacttctcaaggttgacgacctcttagttgttagag
ccaaaaacagccaattagtttttatcttactggtgaaaacagacatttat
ttcaaaagaaaacactgaagaattcatttcttaaattatctttttatact
ttgtgtaaagtatcactacgtttccattagattaaattaaattgaatttc
agttaacaaatcaataataatttgctttaggtagtaaatctaaatagtga
tgggtacatatttcacagaattatattaaaaatattataaccttagacta
agaagatgttaaatgatttaaactcttataaagaaggtatatttatttta
tatgttcctccaaaagtattttttcagtagaaaatattttgtactgtgat
tttctttaaatataatatattcagatatttagatcatgatctgtctcatg
actatttcccagctgagctgttacccaaatgtattgatttgatattcata
cattcattctgacaatactggagtctttacagaagtcgatttggaactta
tctatttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_13585298_13586480
seq2: B6Ng01-072M02.g_67_1225

seq1  GAATTCAGCTGTACATACAAGGCTGGACCCATCAGTCTTCAAAGCAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTACATACAAGGCTGGACCCATCAGTCTTCAAAGCAGCTC  50

seq1  CAACCCCAAGTCCACACAGGTGACCCTAGTCAACCCAAAGGGACAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAAGTCCACACAGGTGACCCTAGTCAACCCAAAGGGACAACAAA  100

seq1  GAAAGAAAATGACAGGAGAGACTTGAATGTAGCAAAGAGAGTAGTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAATGACAGGAGAGACTTGAATGTAGCAAAGAGAGTAGTATGAA  150

seq1  GGGGTAGGGTAAACAGGAAGAAGGGAGAAGAGAGAGCTTTCAAAATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGGGTAAACAGGAAGAAGGGAGAAGAGAGAGCTTTCAAAATGTAT  200

seq1  CATACACATGTGTGAAAGAACAAATTGGAAAATAAGTAGGCAACGATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATGTGTGAAAGAACAAATTGGAAAATAAGTAGGCAACGATTAA  250

seq1  AACTGCAATGCTATATTTTATTCGTTCTTCAACCCAATTCTGTAACCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAATGCTATATTTTATTCGTTCTTCAACCCAATTCTGTAACCTAT  300

seq1  GCATACATCTGGACAAGAGCACTAGAGCTACTTTCTGCTTTAGTATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATCTGGACAAGAGCACTAGAGCTACTTTCTGCTTTAGTATTTTG  350

seq1  TTAATGTGATTATGTTAACATTAAAATATTTATTTAGATGGTTCAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGATTATGTTAACATTAAAATATTTATTTAGATGGTTCAGGACA  400

seq1  CTGAAAAGATAAGTCAGCACACATACAGGAATACAATTAATATGTACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGATAAGTCAGCACACATACAGGAATACAATTAATATGTACTTA  450

seq1  GCCAGCTGTGTAAAACTCCTAATCTATATTTCCTAGAGCTGTTTCTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGTGTAAAACTCCTAATCTATATTTCCTAGAGCTGTTTCTCTTA  500

seq1  ACTTTCCAGTTACCAGCAGATTTGTAAGATTGACATTAGCCTGCTATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCAGTTACCAGCAGATTTGTAAGATTGACATTAGCCTGCTATAAC  550

seq1  CCCGCCCCACCCCCAGTTGAGGTCCACATCACTGACATTTAGCTTTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCCACCCCCAGTTGAGGTCCACATCACTGACATTTAGCTTTTACC  600

seq1  CTTAACAGTCTACAAACTTCTCAAGGTTGACGACCTCTTAGTTGTTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAGTCTACAAACTTCTCAAGGTTGACGACCTCTTAGTTGTTAGAG  650

seq1  CCAAAAACAGCCAATTAGTTTTTATCTTACTGGTGAAAACAGACATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACAGCCAATTAGTTTTTATCTTACTGGTGAAAACAGACATTTAT  700

seq1  TTCAAAAGAAAACACTGAAGAATTCATTTCTTAAATTATCTTTTTATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGAAAACACTGAAGAATTCATTTCTTAAATTATCTTTTTATACT  750

seq1  TTGTGTAAAGTATCACTACGTTTCCATTAGATTAAATTAAATTGAATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAAGTATCACTACGTTTCCATTAGATTAAATTAAATTGAATTTC  800

seq1  AGTTAACAAATCAATAATAATTTGCTTTAGGTAGTAAATCTAAATAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACAAATCAATAATAATTTGCTTTAGGTAGTAAATCTAAATAGTGA  850

seq1  TGGGTACATATTTCACAGAATTATATTAAAAATATTATAACCTTAGACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACATATTTCACAGAATTATATTAAAAATATTATAACCTTAGACTA  900

seq1  AGAAGATGTTTAAATGATTTAAAACTCTTATAAAGAAGGTATATTTATTT  950
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  AGAAGATG-TTAAATGATTT-AAACTCTTATAAAGAAGGTATATTTATTT  948

seq1  TATATGTTCCTCCAAAAAGTATTTATTTCAGTAGAAAATATTTTGTACTT  1000
      ||||||||||||| |||||||||| ||||||||||||||||||||||| |
seq2  TATATGTTCCTCC-AAAAGTATTT-TTTCAGTAGAAAATATTTTGTAC-T  995

seq1  GTGATTTTCCTTTAAATATAATATATTCCAGATATTTGGATCATGATTCT  1050
      |||||||| |||||||||||||||||| ||||||||| |||||||| |||
seq2  GTGATTTT-CTTTAAATATAATATATT-CAGATATTTAGATCATGA-TCT  1042

seq1  GGTCTCATGACTATTTCCCAGCTGAGCTGTTACCCAGATGGTATTTGAAT  1100
       ||||||||||||||||||||||||||||||||||| || |||||   ||
seq2  -GTCTCATGACTATTTCCCAGCTGAGCTGTTACCCAAAT-GTATT--GAT  1088

seq1  TTGTATTATCATTACATTCATTCTTGACCAATACTTTGAGTCCTTACCAG  1150
      ||| ||  ||| ||||||||||| ||| |||||| | ||||| ||| |||
seq2  TTG-ATATTCA-TACATTCATTC-TGA-CAATAC-TGGAGTCTTTA-CAG  1132

seq1  AAAGGTCAGAATTTTGGAACTTTATCTATTTCT  1183
      ||  ||| ||  |||||||| ||||||||||||
seq2  AA--GTC-GA--TTTGGAAC-TTATCTATTTCT  1159