BAC Information

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BAC

Clone NameB6Ng01-072P23
Chromosome6 (Build37)
Map Location 114,664,902 - 114,847,086
singlet/doubletdoublet
Overlap geneAtg7, Vgll4
Upstream geneGhrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
Downstream gene1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072P23.bB6Ng01-072P23.g
ACCDH890256DH890257
length1,010188
definitionDH890256|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P23, 5' end.DH890257|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,846,075 - 114,847,086)(114,664,902 - 114,665,089)
sequence
gaattccccacaaagtcaggtagttgacttcaagttgccaccctcccagg
acctgtgagcctacctcagatgctaggcctgcatgtagcagaggctgtgt
ggctgtgtgtggcaggggagtgtggctgagcagctctggaacattgtgac
aagacaattagagaaggccaccgcatttccactgcctgaccgttctgtct
gagcatcgtcctgacccttagaaggtggccctggtggggaagaggtttga
gcaaggccttgctgcttacattcagtcaccagcactttctaaacgctggg
aaatggagtctgattccagaaccttctgcagatagttcttcccatagttc
ccttcctccttccgctcatttttcttcccctcctccccctcctttacctc
ctccccctccccttccccagcagtatgttaccagtgcatatgtgcaatca
gttctagatagaaaaggttcctgatggacatagagcctcctccattgaga
agggcttaatgtactgatattgaaggggcctgagccagctttgtcttgtt
ggcacttgtggcccatggcaggacacgtaacactttggatcattgccaaa
tgttctctggttcaagtggacaccaagtctgtacatcaatacagaagccg
gcttgtccactctactgaacactctcctttggaccttctgggaagggaga
ggagaccccagatagaagaaaatgctggctaagtgagggtcagaaagcag
gggtgccaacaggtgttgagtatttttgaatcccagttaagatttatgaa
tcccaccgggcagttagtggcacatatctttaatcccagcactttgggag
gcagaggcaggcagattttgggttcaaggccagcctgtctacaagttgag
ttccaggacagccagggctatacagagaaaccctgtctcgaaaaaacaaa
acaaaacaaaatgaaaaagtttatgatcccaaactcagcttagggctaga
ctcccggctt
atccccaacaagcgagcctggcagttgcctgccattcaccaagctttcca
gctttctcgtcctttgcagttatctgaagggttattttggttgttggcca
tctcttcatttggccttttcaaaagctgaagaataatgccaccgtatatg
gtaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_114846075_114847086
seq2: B6Ng01-072P23.b_46_1055 (reverse)

seq1  AAGCC-GGAGTCTAGCCCTAAAGCTGAGTTTGGGATTCATAAACCTTTTT  49
      ||||| ||||||||||||| ||||||||||||||| ||||||||  ||||
seq2  AAGCCGGGAGTCTAGCCCT-AAGCTGAGTTTGGGA-TCATAAAC--TTTT  46

seq1  TCATTTTGTTTTGTTTTGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTTTGTTTTGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCC  96

seq1  TGGCTGTCCTGGAACTCACTTTGTAGACAAGGCTGGCCTTGAACCCAAAA  149
      ||||||||||||||||||  |||||||| ||||||||||||||||| |||
seq2  TGGCTGTCCTGGAACTCAACTTGTAGAC-AGGCTGGCCTTGAACCC-AAA  144

seq1  ATCTGCCTGCCTCTGCCTCCC-AAGTGCTGGGATTAAAGATATGTGCCAC  198
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCCTCCCAAAGTGCTGGGATTAAAGATATGTGCCAC  194

seq1  T-ACTGCCCGGTGGGATTCATAAATCTTAACTGGGATTC-AAAATACTCA  246
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAACTGCCCGGTGGGATTCATAAATCTTAACTGGGATTCAAAAATACTCA  244

seq1  ACACCTGTTGGCACCCCTGCTTTCTGACCCTCACTTAGCCAGCATTTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTTGGCACCCCTGCTTTCTGACCCTCACTTAGCCAGCATTTTCT  294

seq1  TCTATCTGGGGTCTCCTCTCCCTTCCCAGAAGGTCCAAAGGAGAGTGTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGGGGTCTCCTCTCCCTTCCCAGAAGGTCCAAAGGAGAGTGTTC  344

seq1  AGTAGAGTGGACAAGCCGGCTTCTGTATTGATGTACAGACTTGGTGTCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGTGGACAAGCCGGCTTCTGTATTGATGTACAGACTTGGTGTCCA  394

seq1  CTTGAACCAGAGAACATTTGGCAATGATCCAAAGTGTTACGTGTCCTGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCAGAGAACATTTGGCAATGATCCAAAGTGTTACGTGTCCTGCC  444

seq1  ATGGGCCACAAGTGCCAACAAGACAAAGCTGGCTCAGGCCCCTTCAATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCACAAGTGCCAACAAGACAAAGCTGGCTCAGGCCCCTTCAATAT  494

seq1  CAGTACATTAAGCCCTTCTCAATGGAGGAGGCTCTATGTCCATCAGGAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACATTAAGCCCTTCTCAATGGAGGAGGCTCTATGTCCATCAGGAAC  544

seq1  CTTTTCTATCTAGAACTGATTGCACATATGCACTGGTAACATACTGCTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATCTAGAACTGATTGCACATATGCACTGGTAACATACTGCTGG  594

seq1  GGAAGGGGAGGGGGAGGAGGCAAAGGAGGGGGAGGAGGGGAAGAAAAATG  646
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAGGGGAGGGGGAGGAGGTAAAGGAGGGGGAGGAGGGGAAGAAAAATG  644

seq1  AGCGGAAGGAGGAAGGGAACTATGGGAAGAACTATCTGCAGAAGGTTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAAGGAGGAAGGGAACTATGGGAAGAACTATCTGCAGAAGGTTCTG  694

seq1  GAATCAGACTCCATTTCCCAGCGTTTAGAAAGTGCTGGTGACTGAATGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGACTCCATTTCCCAGCGTTTAGAAAGTGCTGGTGACTGAATGTA  744

seq1  AGCAGCAAGGCCTTGCTCAAACCTCTTCCCCACCAGGGCCACCTTCTAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAGGCCTTGCTCAAACCTCTTCCCCACCAGGGCCACCTTCTAAG  794

seq1  GGTCAGGACGATGCTCAGACAGAACGGTCAGGCAGTGGAAATGCGGTGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGACGATGCTCAGACAGAACGGTCAGGCAGTGGAAATGCGGTGGC  844

seq1  CTTCTCTAATTGTCTTGTCACAATGTTCCAGAGCTGCTCAGCCACACTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAATTGTCTTGTCACAATGTTCCAGAGCTGCTCAGCCACACTCC  894

seq1  CCTGCCACACACAGCCACACAGCCTCTGCTACATGCAGGCCTAGCATCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCACACACAGCCACACAGCCTCTGCTACATGCAGGCCTAGCATCTG  944

seq1  AGGTAGGCTCACAGGTCCTGGGAGGGTGGCAACTTGAAGTCAACTACCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCTCACAGGTCCTGGGAGGGTGGCAACTTGAAGTCAACTACCTG  994

seq1  ACTTTGTGGGGAATTC  1012
      ||||||||||||||||
seq2  ACTTTGTGGGGAATTC  1010

seq1: chr6_114664902_114665089
seq2: B6Ng01-072P23.g_74_261

seq1  ATCCCCAACAAGCGAGCCTGGCAGTTGCCTGCCATTCACCAAGCTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAACAAGCGAGCCTGGCAGTTGCCTGCCATTCACCAAGCTTTCCA  50

seq1  GCTTTCTCGTCCTTTGCAGTTATCTGAAGGGTTATTTTGGTTGTTGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCGTCCTTTGCAGTTATCTGAAGGGTTATTTTGGTTGTTGGCCA  100

seq1  TCTCTTCATTTGGCCTTTTCAAAAGCTGAAGAATAATGCCACCGTATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATTTGGCCTTTTCAAAAGCTGAAGAATAATGCCACCGTATATG  150

seq1  GTAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  188
      ||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  188