BAC Information

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BAC

Clone NameB6Ng01-073O05
Chromosome6 (Build37)
Map Location 23,976,933 - 24,039,790
singlet/doubletdoublet
Overlap geneLOC100041082, Slc13a1
Upstream genePtprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148, Tas2r118
Downstream geneLOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073O05.bB6Ng01-073O05.g
ACCDH890885DH890886
length1,1181,204
definitionDH890885|Mus musculus domesticus DNA, BAC clone: B6Ng01-073O05, 5' end.DH890886|Mus musculus domesticus DNA, BAC clone: B6Ng01-073O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,976,933 - 23,978,063)(24,038,578 - 24,039,790)
sequence
gaattccaggtactaataactgctgtcaggaaatggaaacagaatttttg
gagtgttcttgagctatctaggtagtcatagattcagcatcttagctgaa
atctgaataagagagacaaccatataatttttatggacacaatatcaatg
aagaaagtctaaagtaccagtgaacttggaagtattgaaaaacataaaag
aatgctttggggagaaaggtaagtgagagaattgggaatctgaagttaaa
gagtagagaggaatctaataagtcaaaagcaggtaggacatcatacaggt
tgagtgtcactgatgcaaatgctcgaaccagaactttctaagcttttgga
gagaatattgttcagatttcagaatattgtcatagactttactggtactc
tatctctaactaaaaattccgtattcccaaatcctactaaaatggcagtt
tgtggtggaacctgaagtgctttgggttgaggatgcctgggagcacatgg
aagcaactagcttagccattaggagatattgaaaaatttgccactagtta
tgtgatctcatttgagatttaataacttctatttgttgacctggagcatt
tcatagagtctgtggattcattcaccaaaaaaaaaaaaagcctttggagt
tttagacccaatcaaattaaagagacttgggaaatactctggaaacttta
catatatgccacaaattacataaaatcaaccttcaaattcaaggtaacca
ggctattgtgtaactatctactggggaaaacttaatatgaattcaaagag
agaatccagagtcattatattatcctaatagcccactatacaattataga
aaacaaaaaggcctgttaaatttctcagaaaaatagctataaatccccct
tttctgtccccaataagatatgaacatatattggattattagacaatata
tgaaattgatataaaatatatttaaacatgtataagatatatattcaata
cttaaagaagtattttttaagaaaagagaaagaaaaagtttcacttctaa
gcaatagattcttattctacggctaaagatcttgtggaagaaggcagaag
attaaaagtcagaggttt
gaattcaggagtattcaaacattctgagagagcagacaattactatttta
ggcttcgcaggccatagtctctgtctcatcctccattttattaaagaaaa
aaaatctagccaaagataaaaaataaaaactgagaaagttgaagtctggg
tctaaaaattggtataacaaaagcagattaagatcagaaactgacaattt
ctaatatgttaaaaagcaattttgagattgttcagtggtcactagaatta
ctatgtaagagttttgaggatacaatcactaagaaaggaatagaagtgac
aatatacactttcatttaaagagtacttgcataggaaaccaatagtgcta
agtgaccccatagaacacagttatcacatagcattctaaaacctatcctt
tgagaactaagattatcaaacttcttacttagcatacaagggcagattga
cttacatatatttcaaagagaaatacctctgatgttgtcaaaatgatagt
taaaaacaaattttcatttgacagtacagtcactgatattagagaatatt
cctagtttgatactcacaacctatgcaggtcattgagggtgcgtgggaat
caggtttgtgctttgtgtgatgctattcggaacccttggtaggatttctc
cctgggagactgacatttatgctcttcccctgttctaggttaaagctgga
cttggagtgaatattttgggtgttgctgtggtgatgctaggcatgttcac
ctggatcgagccgatgtttaacctccacgagtatccctcctgggcttcta
actttgttaatcagaccatgccatgacaaacacacaagagctaccagttc
atggtgactttaggacttgcttagaattgactgtacaatgtagctgtata
ggactggcacatgcaaatcatcgatacagctacggcattcgcagaacatg
cctcacacatgccccttgtcagcatcttaatacagagtccgtatctttca
aacccattcaaaaagcatctaccccgccttcgttcaaaactaagtggaga
atggcacctggcagaccatctatgtgccttgctctttcttctaaaatgga
tgcttaaggacctttcaagaagttaggccatcaccgcactcttaacttga
gttagtgtaacatggcaacctcacttattaattttgaagttcttagaaac
taaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_23976933_23978063
seq2: B6Ng01-073O05.b_50_1167

seq1  GAATTCCAGGTACTAATAACTGCTGTCAGGAAATGGAAACAGAATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTACTAATAACTGCTGTCAGGAAATGGAAACAGAATTTTTG  50

seq1  GAGTGTTCTTGAGCTATCTAGGTAGTCATAGATTCAGCATCTTAGCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTCTTGAGCTATCTAGGTAGTCATAGATTCAGCATCTTAGCTGAA  100

seq1  ATCTGAATAAGAGAGACAACCATATAATTTTTATGGACACAATATCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATAAGAGAGACAACCATATAATTTTTATGGACACAATATCAATG  150

seq1  AAGAAAGTCTAAAGTACCAGTGAACTTGGAAGTATTGAAAAACATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTCTAAAGTACCAGTGAACTTGGAAGTATTGAAAAACATAAAAG  200

seq1  AATGCTTTGGGGAGAAAGGTAAGTGAGAGAATTGGGAATCTGAAGTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTGGGGAGAAAGGTAAGTGAGAGAATTGGGAATCTGAAGTTAAA  250

seq1  GAGTAGAGAGGAATCTAATAAGTCAAAAGCAGGTAGGACATCATACAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGAGGAATCTAATAAGTCAAAAGCAGGTAGGACATCATACAGGT  300

seq1  TGAGTGTCACTGATGCAAATGCTCGAACCAGAACTTTCTAAGCTTTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCACTGATGCAAATGCTCGAACCAGAACTTTCTAAGCTTTTGGA  350

seq1  GAGAATATTGTTCAGATTTCAGAATATTGTCATAGACTTTACTGGTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATTGTTCAGATTTCAGAATATTGTCATAGACTTTACTGGTACTC  400

seq1  TATCTCTAACTAAAAATTCCGTATTCCCAAATCCTACTAAAATGGCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTAACTAAAAATTCCGTATTCCCAAATCCTACTAAAATGGCAGTT  450

seq1  TGTGGTGGAACCTGAAGTGCTTTGGGTTGAGGATGCCTGGGAGCACATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGAACCTGAAGTGCTTTGGGTTGAGGATGCCTGGGAGCACATGG  500

seq1  AAGCAACTAGCTTAGCCATTAGGAGATATTGAAAAATTTGCCACTAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTAGCTTAGCCATTAGGAGATATTGAAAAATTTGCCACTAGTTA  550

seq1  TGTGATCTCATTTGAGATTTAATAACTTCTATTTGTTGACCTGGAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTCATTTGAGATTTAATAACTTCTATTTGTTGACCTGGAGCATT  600

seq1  TCATAGAGTCTGTGGATTCATTCACCAAAAAAAAAAAAAGCCTTTGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGTCTGTGGATTCATTCACCAAAAAAAAAAAAAGCCTTTGGAGT  650

seq1  TTTAGACCCAATCAAATTAAAGAGACTTGGGAAATACTCTGGAAACTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACCCAATCAAATTAAAGAGACTTGGGAAATACTCTGGAAACTTTA  700

seq1  CATATATGCCACAAATTACATAAAATCAACCTTCAAATTCAAGGTAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCCACAAATTACATAAAATCAACCTTCAAATTCAAGGTAACCA  750

seq1  GGCTATTGTGTAACTATCTACTGGGGAAAACTTAATATGAATTCAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTGTGTAACTATCTACTGGGGAAAACTTAATATGAATTCAAAGAG  800

seq1  AGAATCCAGAGTCATTATATTATCCTAATAGCCCACTATACAATTATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCAGAGTCATTATATTATCCTAATAGCCCACTATACAATTATAGA  850

seq1  AAACAAAAAGGCCTGATAAATTTCTCAGAAAAATAGCTATAAATCCCCCT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  AAACAAAAAGGCCTGTTAAATTTCTCAGAAAAATAGCTATAAATCCCCC-  899

seq1  TTTTCTGTCCCCAATAAGATATGAACATATATTGGATTATTAGACAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTCTGTCCCCAATAAGATATGAACATATATTGGATTATTAGAC-AATA  948

seq1  TATGAAATTGATATTAAAATATATTTAAACATGTATAAGAATATATATTC  1000
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TATGAAATTGATA-TAAAATATATTTAAACATGTATAAG-ATATATATTC  996

seq1  AAATACTAAAGAAAGTATTTTTTTAAGAAAAGAGAAAGAAAAAGTTTCAA  1050
       |||||| ||  ||||| |||||||||||||||||||||||||||||| |
seq2  -AATACTTAAAGAAGTA-TTTTTTAAGAAAAGAGAAAGAAAAAGTTTC-A  1043

seq1  CTTCTAAGGCAATAGAATCTTATCCTACGGCCTAGAGATCTTTGTGGAAG  1100
      ||||||| |||||||| |||||| |||||| ||| ||||| |||||||||
seq2  CTTCTAA-GCAATAGATTCTTATTCTACGG-CTAAAGATC-TTGTGGAAG  1090

seq1  AGGGCAGGAAGATTTTAAAAGTCAGAGGTTT  1131
      | |||| |||||  |||||||||||||||||
seq2  AAGGCA-GAAGA--TTAAAAGTCAGAGGTTT  1118

seq1: chr6_24038578_24039790
seq2: B6Ng01-073O05.g_70_1273 (reverse)

seq1  TTTAGTTTCATAAGAAAATATTTTCAAA--TAATAAGTTGATGTTTGCAA  48
      ||||||||| ||||||      ||||||  ||||||| ||| | |||| |
seq2  TTTAGTTTC-TAAGAA-----CTTCAAAATTAATAAG-TGA-GGTTGCCA  42

seq1  TGTTACACTGAACTCCAAGTTTAAGA-TGCGGTGAATGGCCTAACTTCTT  97
      ||||||||| |||| |||| |||||| ||||||| |||||||||||||||
seq2  TGTTACACT-AACT-CAAG-TTAAGAGTGCGGTG-ATGGCCTAACTTCTT  88

seq1  TGAAGGTCCTTAAGCATCATTTTTATGGAGAAAGAGCAA-GCACATAGAT  146
        ||||||||||||||||  ||||| | ||||||||||| ||||||||||
seq2  GAAAGGTCCTTAAGCATCCATTTTA-GAAGAAAGAGCAAGGCACATAGAT  137

seq1  GGTCTGCCA-GTG-CAGTCTCCACCTTAGTTTCTGGACGAAGGC-GGGTA  193
      ||||||||| ||| || |||||| |||||||| || |||||||| |||||
seq2  GGTCTGCCAGGTGCCATTCTCCA-CTTAGTTT-TGAACGAAGGCGGGGTA  185

seq1  GATGCTCTTTGATTGGGTTTGAAAAGATACGGACTCTGTATTAAGATGCT  243
      |||||| ||||| |||||||| ||||||||||||||||||||||||||||
seq2  GATGCTTTTTGAATGGGTTTG-AAAGATACGGACTCTGTATTAAGATGCT  234

seq1  GACAAGGGGCATGTGTGAGGCATGTTCTGCGATTGCCGTAGCTGTATCGA  293
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GACAAGGGGCATGTGTGAGGCATGTTCTGCGAATGCCGTAGCTGTATCGA  284

seq1  TGATTTGCATGTGCCAGTCCTATACAGCTACATTGTACAGTCAATTCTTA  343
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGATTTGCATGTGCCAGTCCTATACAGCTACATTGTACAGTCAATTCTAA  334

seq1  GCAAGTCCTAAAGTCACCATGAACTGGTAGCTCTTGTGTGTTTGTCATGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCTAAAGTCACCATGAACTGGTAGCTCTTGTGTGTTTGTCATGG  384

seq1  CATGGTCTGATTAACAAAGTTAGAAGCCCAGGAGGGATACTCGTGGAGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTGATTAACAAAGTTAGAAGCCCAGGAGGGATACTCGTGGAGGT  434

seq1  TAAACATCGGCTCGATCCAGGTGAACATGCCTAGCATCACCACAGCAACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCGGCTCGATCCAGGTGAACATGCCTAGCATCACCACAGCAACA  484

seq1  CCCAAAATATTCACTCCAAGTCCAGCTTTAACCTAGAACAGGGGAAGAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATATTCACTCCAAGTCCAGCTTTAACCTAGAACAGGGGAAGAGC  534

seq1  ATAAATGTCAGTCTCCCAGGGAGAAATCCTACCAAGGGTTCCGAATAGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTCAGTCTCCCAGGGAGAAATCCTACCAAGGGTTCCGAATAGCA  584

seq1  TCACACAAAGCACAAACCTGATTCCCACGCACCCTCAATGACCTGCATAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAAGCACAAACCTGATTCCCACGCACCCTCAATGACCTGCATAG  634

seq1  GTTGTGAGTATCAAACTAGGAATATTCTCTAATATCAGTGACTGTACTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGTATCAAACTAGGAATATTCTCTAATATCAGTGACTGTACTGT  684

seq1  CAAATGAAAATTTGTTTTTAACTATCATTTTGACAACATCAGAGGTATTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAATTTGTTTTTAACTATCATTTTGACAACATCAGAGGTATTT  734

seq1  CTCTTTGAAATATATGTAAGTCAATCTGCCCTTGTATGCTAAGTAAGAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAAATATATGTAAGTCAATCTGCCCTTGTATGCTAAGTAAGAAG  784

seq1  TTTGATAATCTTAGTTCTCAAAGGATAGGTTTTAGAATGCTATGTGATAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAATCTTAGTTCTCAAAGGATAGGTTTTAGAATGCTATGTGATAA  834

seq1  CTGTGTTCTATGGGGTCACTTAGCACTATTGGTTTCCTATGCAAGTACTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCTATGGGGTCACTTAGCACTATTGGTTTCCTATGCAAGTACTC  884

seq1  TTTAAATGAAAGTGTATATTGTCACTTCTATTCCTTTCTTAGTGATTGTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAAAGTGTATATTGTCACTTCTATTCCTTTCTTAGTGATTGTA  934

seq1  TCCTCAAAACTCTTACATAGTAATTCTAGTGACCACTGAACAATCTCAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAACTCTTACATAGTAATTCTAGTGACCACTGAACAATCTCAAA  984

seq1  ATTGCTTTTTAACATATTAGAAATTGTCAGTTTCTGATCTTAATCTGCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTTTAACATATTAGAAATTGTCAGTTTCTGATCTTAATCTGCTT  1034

seq1  TTGTTATACCAATTTTTAGACCCAGACTTCAACTTTCTCAGTTTTTATTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATACCAATTTTTAGACCCAGACTTCAACTTTCTCAGTTTTTATTT  1084

seq1  TTTATCTTTGGCTAGATTTTTTTTCTTTAATAAAATGGAGGATGAGACAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTGGCTAGATTTTTTTTCTTTAATAAAATGGAGGATGAGACAG  1134

seq1  AGACTATGGCCTGCGAAGCCTAAAATAGTAATTGTCTGCTCTCTCAGAAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGGCCTGCGAAGCCTAAAATAGTAATTGTCTGCTCTCTCAGAAT  1184

seq1  GTTTGAATACTCCTGAATTC  1213
      ||||||||||||||||||||
seq2  GTTTGAATACTCCTGAATTC  1204