BAC Information

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BAC

Clone NameB6Ng01-074A19
Chromosome6 (Build37)
Map Location 9,651,312 - 9,787,524
singlet/doubletdoublet
Overlap genenone
Upstream geneIca1, LOC100040238, Nxph1
Downstream geneLOC330264, LOC100040285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074A19.bB6Ng01-074A19.g
ACCDH891005DH891006
length838893
definitionDH891005|Mus musculus domesticus DNA, BAC clone: B6Ng01-074A19, 5' end.DH891006|Mus musculus domesticus DNA, BAC clone: B6Ng01-074A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,651,312 - 9,652,148)(9,786,644 - 9,787,524)
sequence
gaattcagaccatatcaagactttgctttgcaggttgcaaagttctcaat
tcacatgtcaagtaatagttttgtgacagaagtatcatttctacaatctt
ccaaataatcttacacggtacataatataaattttatctagtagttgaga
agttaatagatcatttagtgtttatatatcttatatataaataaaaatgg
tagtctatagtaatttaaaaagaatttaaaactaatatgtaatagattta
ttcttatgtttttcaaaactaaggctagaagagatcagggctaccagaat
tagcttattcttgagtactttgttccatggacagagaagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaac
atgagtataaaggataaagagtaaatgctttgcttcctgaattctgacat
caggacaaaaaatatataatgtaagctcttttattcttcacttgaatttg
aacttcgaattttgaaagatgtgaaggacaaaagcagatatatgtttgat
atttgtagagacatgcagcatagtggggcaatgacagcacagatgacatt
cagtgtccaggggaagaggttttcccattgaactgctctgatttaccatc
tcaaaatttccaccaattctagaaatttccttgagctatttctctttgct
gttcaaatgatgttgaaacttagaatttttatttatgcatatttaaaata
attcacttatttttgttaatataattgtatcatttcccccttctcttctt
ccctccaatcttccataaaaccttcattacttcctttc

gaattcatatgaaaatgcaggttacatttatgtttttaggaattatgtat
gtatatacaatggctatagatttgatagagagcaaggagggatacatggg
agagttgaaagggaggaaagagtaggagatggtgtaattatattatattc
ataaaaatgtgagaaataagaacaaacatacaataggttgaaatattaca
catcagaataaaattcttagtggattctgtgaaatcactaaggagaaaaa
taacaaggcatatctggaagtaagccctgagaaccccttatttcttctaa
agagtttaagctatataccttcaaatttactacgtattattctcctctgg
ggtacataatatgtgcaagaacttcagcagaaggtctgtgcatggagtgg
gaagagcaatctccattaatattcaatgtttcacttaatatattatcttc
aacaaagaacagatcttatattaaactattaaaaacaaatggtatacttg
ttcttatctaaaaggccaagaagtaacaatattatccaatttgaaggaaa
ttattatttattgagccagggataacaccctttaaaatcagattttcttg
tgaatcaccattggggaaatacatattaacaactaagataaatatatata
tctttttctttctcttggtagttaatgtgcccactaaattaatacatgtt
tatatgtctctccatcttttctgtcaacaacattcctttagaagttgcat
cagtaaattttctttttagcggttttattttacaggtaccctgtgctgtt
ttctcacgtatctctttcactttctcaccacttccctgggtatccttctt
ccctctcttttctcatactttggtctttatttcatctctctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9651312_9652148
seq2: B6Ng01-074A19.b_42_879

seq1  GAATTCAGACCATATCAAGACTTTGCTTTGCAGGTTGCAAAGTTCTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCATATCAAGACTTTGCTTTGCAGGTTGCAAAGTTCTCAAT  50

seq1  TCACATGTCAAGTAATAGTTTTGTGACAGAAGTATCATTTCTACAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTCAAGTAATAGTTTTGTGACAGAAGTATCATTTCTACAATCTT  100

seq1  CCAAATAATCTTACACGGTACATAATATAAATTTTATCTAGTAGTTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAATCTTACACGGTACATAATATAAATTTTATCTAGTAGTTGAGA  150

seq1  AGTTAATAGATCATTTAGTGTTTATATATCTTATATATAAATAAAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAGATCATTTAGTGTTTATATATCTTATATATAAATAAAAATGG  200

seq1  TAGTCTATAGTAATTTAAAAAGAATTTAAAACTAATATGTAATAGATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATAGTAATTTAAAAAGAATTTAAAACTAATATGTAATAGATTTA  250

seq1  TTCTTATGTTTTTCAAAACTAAGGCTAGAAGAGATCAGGGCTACCAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGTTTTTCAAAACTAAGGCTAGAAGAGATCAGGGCTACCAGAAT  300

seq1  TAGCTTATTCTTGAGTACTTTGTTCCATGGACAGAGAAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATTCTTGAGTACTTTGTTCCATGGACAGAGAAGAGAGAGAGAGA  350

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAC  400

seq1  ATGAGTATAAAGGATAAAGAGTAAATGCTTTGCTTCCTGAATTCTGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATAAAGGATAAAGAGTAAATGCTTTGCTTCCTGAATTCTGACAT  450

seq1  CAGGACAAAAAATATATAATGTAAGCTCTTTTATTCTTCACTTGAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAAAAAATATATAATGTAAGCTCTTTTATTCTTCACTTGAATTTG  500

seq1  AACTTCGAATTTTGAAAGATGTGAAGGACAAAAGCAGATATATGTTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCGAATTTTGAAAGATGTGAAGGACAAAAGCAGATATATGTTTGAT  550

seq1  ATTTGTAGAGACATGCAGCATAGTGGGGCAATGACAGCACAGATGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGAGACATGCAGCATAGTGGGGCAATGACAGCACAGATGACATT  600

seq1  CAGTGTCCAGGGGAAGAGG-TTTCCCATTGAACTGCTCTGATTTACCATC  649
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGTGTCCAGGGGAAGAGGTTTTCCCATTGAACTGCTCTGATTTACCATC  650

seq1  TCAAAATTTCCACCAATTCTAG-AATTTCCTTGAGCTATTTCTCTTTGCT  698
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAAAATTTCCACCAATTCTAGAAATTTCCTTGAGCTATTTCTCTTTGCT  700

seq1  GTTCAAATGATGTTGAAACTTAGAATTTTTATTTATGCATATTTAAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATGATGTTGAAACTTAGAATTTTTATTTATGCATATTTAAAATA  750

seq1  ATTCACTTATTTTTGTTAATATAATTGTATCATTTCCCCCTTCTCTTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTATTTTTGTTAATATAATTGTATCATTTCCCCCTTCTCTTCTT  800

seq1  CCCTCCAAATCTTCCATAAAACCTTCATTACTTCCTTTC  837
      |||||| ||||||||||||||||||||||||||||||||
seq2  CCCTCC-AATCTTCCATAAAACCTTCATTACTTCCTTTC  838


seq1: chr6_9786644_9787524
seq2: B6Ng01-074A19.g_66_958 (reverse)

seq1  TCAGAGAGATGAAATAAAGA-CAAAGTATGAG-AAAGAGAAGGAAGAAGG  48
      |||||||||||||||||||| ||||||||||| ||||||| |||||||||
seq2  TCAGAGAGATGAAATAAAGACCAAAGTATGAGAAAAGAGAGGGAAGAAGG  50

seq1  ATA-CCAGGGAAGTGGTGAGAAAGTGAAAGAGATACGTGAG-AAACAGCA  96
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATACCCAGGGAAGTGGTGAGAAAGTGAAAGAGATACGTGAGAAAACAGCA  100

seq1  CAGGGTACCTGT-AAATAAAACCGCTAAAA--GAAATTTACTGATGCAAC  143
      |||||||||||| |||||||||||||||||   |||||||||||||||||
seq2  CAGGGTACCTGTAAAATAAAACCGCTAAAAAGAAAATTTACTGATGCAAC  150

seq1  TTCTAAAGGAATGTTGTTGACAGAAAAGATGGAGAGACATATAAACATGT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGGAATGTTGTTGACAGAAAAGATGGAGAGACATATAAACATGT  200

seq1  ATT-ATTTAGTGGGCACATTAACTACCAAGAGAAAG-AAAAGATATATAT  241
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTAATTTAGTGGGCACATTAACTACCAAGAGAAAGAAAAAGATATATAT  250

seq1  ATTTATCTTAGTTGTTAATATGTATTT-CCCAATGGTGATTC-CAAG-AA  288
      ||||||||||||||||||||||||||| |||||||||||||| |||| ||
seq2  ATTTATCTTAGTTGTTAATATGTATTTCCCCAATGGTGATTCACAAGAAA  300

seq1  ATCTGATTTTAAAGGGTGTTATCCCTGGCTCAATAAATAATAATTTCCTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTTTAAAGGGTGTTATCCCTGGCTCAATAAATAATAATTTCCTT  350

seq1  CAAATTGGATAATATTGTTACTTCTTGGCCTTTTTGATAAGAACAAGTAT  388
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAATTGGATAATATTGTTACTTCTTGGCCTTTTAGATAAGAACAAGTAT  400

seq1  ACCATTTGTTTTTAATAGTTTAATATAAGATCTGTTCTTTGTTGAAGATA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGTTTTTAATAGTTTAATATAAGATCTGTTCTTTGTTGAAGATA  450

seq1  ATATATTAAGTGAAACATTGAATATTAATGGAGATTGCTCTTCCCACTCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAGTGAAACATTGAATATTAATGGAGATTGCTCTTCCCACTCC  500

seq1  ATGCACAGACCTTCTGCTGAAGTTCTTGCACATATTATGTACCCCAGAGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGACCTTCTGCTGAAGTTCTTGCACATATTATGTACCCCAGAGG  550

seq1  AGAATAATACGTAGTAAATTTGAAGGTATATAGCTTAAACTCTTTAGAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATACGTAGTAAATTTGAAGGTATATAGCTTAAACTCTTTAGAAG  600

seq1  AAATAAGGGGTTCTCAGGGCTTACTTCCAGATATGCCTTGTTATTTTTCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGGGTTCTCAGGGCTTACTTCCAGATATGCCTTGTTATTTTTCT  650

seq1  CCTTAGTGATTTCACAGAATCCACTAAGAATTTTATTCTGATGTGTAATA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGATTTCACAGAATCCACTAAGAATTTTATTCTGATGTGTAATA  700

seq1  TTTCAACCTATTGTATGTTTGTTCTTATTTCTCACATTTTTATGAATATA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACCTATTGTATGTTTGTTCTTATTTCTCACATTTTTATGAATATA  750

seq1  ATATAATTACACCATCTCCTACTCTTTCCTCCCTTTCAACTCTCCCATGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTACACCATCTCCTACTCTTTCCTCCCTTTCAACTCTCCCATGT  800

seq1  ATCCCTCCTTGCTCTCTATCAAATCTATAGCCATTGTATATACATACATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCTTGCTCTCTATCAAATCTATAGCCATTGTATATACATACATA  850

seq1  ATTCCTAAAAACATAAATGTAACCTGCATTTTCATATGAATTC  881
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAAAACATAAATGTAACCTGCATTTTCATATGAATTC  893


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