BAC Information

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BAC

Clone NameB6Ng01-074G08
Chromosome6 (Build37)
Map Location 72,400,531 - 72,617,349
singlet/doubletdoublet
Overlap geneSh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
Upstream geneLOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074G08.bB6Ng01-074G08.g
ACCDH891257DH891258
length1,0701,059
definitionDH891257|Mus musculus domesticus DNA, BAC clone: B6Ng01-074G08, 5' end.DH891258|Mus musculus domesticus DNA, BAC clone: B6Ng01-074G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,616,273 - 72,617,349)(72,400,531 - 72,401,542)
sequence
gaattcatggcttctttatctcagatcctgcaaacaaatgggagtggagc
ctagagatttttccagatggcttggtgcctggtccagacttctctgctgt
ctcatagaccaggtttgatgatctgggggcttttgttccccacagtcaat
tagctagtgtggtcccggtggttacacggagatcaccagggggcagtgtt
gagctgttgtgcatattgagaatgccttctggtttagccataagaaaaat
ttgaatgacacaattattcttttgttgagtgttttatgacttctgcagat
cggtgctcataatattgatttgcctgcattaggagttcatccccctacaa
ctgtttttacgttcactcttgtgggttctggcaaatatcacggtccatca
tagctctcccacagctacggcacgggcccaggacacctgggttgttcctc
ctaatttcatttaggcgagtggcctctgggaccatggtgggatggctcag
cccttttgtctaaggaaagccagcatgggctgcaggaatcatggtccgag
ttgctcttttccggcactagtatacttaaagagttaaaagtgtggtcttg
gatgagataggactttgggcttaactagttactcagctttctgtgccata
gggggagtacacgccatcttagaagatgaggatgaaatgatatgatacat
gagaatagcttgggagtttgcagatgtcttttttaaagaaatctatctat
gcaggttctgtaatgaatttccattagctagctagctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctctttctc
ccttccttccttccttcttttttttttttttaagatttatttattgatta
tatgtaagtacactgtagttgtcttcagacactctagagagggggtcaga
tcttgttggggatggtgtgagccacatgtgttgctgggatttgaactctc
gaacttcggaagagcagtcaggtgctctacccactgatcatcttgccagc
ccccgcttcttctttccttt
gaattctttgtttagctctgtaccccatttttaatagggttgtttggttt
tctggagtccagcttcttgagttctttatatatattggatattagccctc
tatctgatttagaattggtaaagatcttttcccactctgttggttgcctt
ttggtcttattgacagtgtcctttgcctttttgcaattttatgaggtccc
atttgtcgattcttgatcttacagcacaagtcattgctgttctgttcagg
aatctttcccctgtgcccatatcttcgaggcttttctccactttctcttc
tataagtttcagtgtctctggttttatgtggagttctatgatccacttag
acgtgaactttgtataaggagataagaatggatcaatttgcattcttcta
catactaaccgccagttgagccagcaccatttgttgaagatgctgacttc
tttccagtggatggttttagctcctttgtcaaagatcaagtgaccataca
tagataggtgtgtgggttcatttctgggtcttcaattctgttccattgat
ctatctgttagcccagaagctcagaatccttcttagaagggggaacaaaa
tacccatggagggagttacagagacaaagttcggagcagaggctgaagag
aggaccatccagagactgccccacctggggatccatcctctaaacaacca
ccaaacccagacactgttgcctatgccaacaagagcttgctgacaggagc
ctgatatggctgtctccttaggggctctgccagtgcctggcaaatacaaa
agtggatgctcacaaatcatccattggacggagcacaaggtccccaatga
aggagctagagaaagtacctaaggagctgaaggggttggagccccatagg
aggaacatcaatatgagctaaccagtaccccagagctccttcgaactaac
cacatcaaataaaacacatggtggacttgtggctctagctggttttgtag
cagaggacggctagtagtatcatgggaggagaggccttagtctgtgaagg
tttatgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72616273_72617349
seq2: B6Ng01-074G08.b_47_1116 (reverse)

seq1  AAAGAAAAGAAAGAAGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGC  50
      |||| |||| |||||| |||||||||| |||| | ||||||||| |||||
seq2  AAAGGAAAG-AAGAAGCGGGGGCTGGCAAGAT-GATCAGTGGGT-AGAGC  47

seq1  ACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATG  100
      |||||||||||||||||||| || ||||||||||||||||||| ||||| 
seq2  ACCTGACTGCTCTTCCGAAGTTCGAGAGTTCAAATCCCAGCAA-CACAT-  95

seq1  GTGGCTCACAACCATCCCCAACAAGATCTGACCCCCTCTTCTAGAGTGTC  150
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  GTGGCTCAC-ACCATCCCCAACAAGATCTGACCCCCTC-TCTAGAGTGTC  143

seq1  TGAAGACAACTACAGTGTACTTACATATAATCAATAAATAAATCTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAACTACAGTGTACTTACATATAATCAATAAATAAATCTTAAAA  193

seq1  AAAAAAAAAAGAAGGAAGGAAGGAAGGGAGAAAGAGAAAGAAAGAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAGGAAGGAAGGAAGGGAGAAAGAGAAAGAAAGAAAGAA  243

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCTAGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCTAGCTAG  293

seq1  CTAATGGAAATTCATTACAGAACCTGCATAGATAGATTTCTTTAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGAAATTCATTACAGAACCTGCATAGATAGATTTCTTTAAAAAAG  343

seq1  ACATCTGCAAACTCCCAAGCTATTCTCATGTATCATATCATTTCATCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCAAACTCCCAAGCTATTCTCATGTATCATATCATTTCATCCTC  393

seq1  ATCTTCTAAGATGGCGTGTACTCCCCCTATGGCACAGAAAGCTGAGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAAGATGGCGTGTACTCCCCCTATGGCACAGAAAGCTGAGTAAC  443

seq1  TAGTTAAGCCCAAAGTCCTATCTCATCCAAGACCACACTTTTAACTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGCCCAAAGTCCTATCTCATCCAAGACCACACTTTTAACTCTTT  493

seq1  AAGTATACTAGTGCCGGAAAAGAGCAACTCGGACCATGATTCCTGCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACTAGTGCCGGAAAAGAGCAACTCGGACCATGATTCCTGCAGCC  543

seq1  CATGCTGGCTTTCCTTAGACAAAAGGGCTGAGCCATCCCACCATGGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGCTTTCCTTAGACAAAAGGGCTGAGCCATCCCACCATGGTCCC  593

seq1  AGAGGCCACTCGCCTAAATGAAATTAGGAGGAACAACCCAGGTGTCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCACTCGCCTAAATGAAATTAGGAGGAACAACCCAGGTGTCCTGG  643

seq1  GCCCGTGCCGTAGCTGTGGGAGAGCTATGATGGACCGTGATATTTGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTGCCGTAGCTGTGGGAGAGCTATGATGGACCGTGATATTTGCCAG  693

seq1  AACCCACAAGAGTGAACGTAAAAACAGTTGTAGGGGGATGAACTCCTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAAGAGTGAACGTAAAAACAGTTGTAGGGGGATGAACTCCTAAT  743

seq1  GCAGGCAAATCAATATTATGAGCACCGATCTGCAGAAGTCATAAAACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAATCAATATTATGAGCACCGATCTGCAGAAGTCATAAAACACT  793

seq1  CAACAAAAGAATAATTGTGTCATTCAAATTTTTCTTATGGCTAAACCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAGAATAATTGTGTCATTCAAATTTTTCTTATGGCTAAACCAGA  843

seq1  AGGCATTCTCAATATGCACAACAGCTCAACACTGCCCCCTGGTGATCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCTCAATATGCACAACAGCTCAACACTGCCCCCTGGTGATCTCC  893

seq1  GTGTAACCACCGGGACCACACTAGCTAATTGACTGTGGGGAACAAAAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACCACCGGGACCACACTAGCTAATTGACTGTGGGGAACAAAAGCC  943

seq1  CCCAGATCATCAAACCTGGTCTATGAGACAGCAGAGAAGTCTGGACCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCATCAAACCTGGTCTATGAGACAGCAGAGAAGTCTGGACCAGG  993

seq1  CACCAAGCCATCTGGAAAAATCTCTAGGCTCCACTCCCATTTGTTTGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCCATCTGGAAAAATCTCTAGGCTCCACTCCCATTTGTTTGCAG  1043

seq1  GATCTGAGATAAAGAAGCCATGAATTC  1077
      |||||||||||||||||||||||||||
seq2  GATCTGAGATAAAGAAGCCATGAATTC  1070

seq1: chr6_72400531_72401542
seq2: B6Ng01-074G08.g_129_1128

seq1  CAGCTTCTTGAGTTCTTTATATATATTGGATATTAGCCCTCTATCTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTGAGTTCTTTATATATATTGGATATTAGCCCTCTATCTGATT  50

seq1  TAGAATTGGTAAAGATCTTTTCCCACTCTGTTGGTTGCCTTTTGGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGGTAAAGATCTTTTCCCACTCTGTTGGTTGCCTTTTGGTCTTA  100

seq1  TTGACAGTGTCCTTTGCCTTTTTGCAATTTTATGAGGTCCCATTTGTCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTGTCCTTTGCCTTTTTGCAATTTTATGAGGTCCCATTTGTCGA  150

seq1  TTCTTGATCTTACAGCACAAGTCATTGCTGTTCTGTTCAGGAATCTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATCTTACAGCACAAGTCATTGCTGTTCTGTTCAGGAATCTTTCC  200

seq1  CCTGTGCCCATATCTTCGAGGCTTTTCTCCACTTTCTCTTCTATAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCCATATCTTCGAGGCTTTTCTCCACTTTCTCTTCTATAAGTTT  250

seq1  CAGTGTCTCTGGTTTTATGTGGAGTTCTATGATCCACTTAGACGTGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCTGGTTTTATGTGGAGTTCTATGATCCACTTAGACGTGAACT  300

seq1  TTGTATAAGGAGATAAGAATGGATCAATTTGCATTCTTCTACATACTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAGGAGATAAGAATGGATCAATTTGCATTCTTCTACATACTAAC  350

seq1  CGCCAGTTGAGCCAGCACCATTTGTTGAAGATGCTGACTTCTTTCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGTTGAGCCAGCACCATTTGTTGAAGATGCTGACTTCTTTCCAGTG  400

seq1  GATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACCATACATAGATAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACCATACATAGATAGGT  450

seq1  GTGTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGATCTATCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGATCTATCTGTT  500

seq1  AGCCCAGAAGCTCAGAATCCTTCTTAGAAGGGGGAACAAAATACCCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGAAGCTCAGAATCCTTCTTAGAAGGGGGAACAAAATACCCATGG  550

seq1  AGGGAGTTACAGAGACAAAGTTCGGAGCAGAGGCTGAAGAGAGGACCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTACAGAGACAAAGTTCGGAGCAGAGGCTGAAGAGAGGACCATC  600

seq1  CAGAGACTGCCCCACCTGGGGATCCATCCTCTAAACAACCACCAAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGCCCCACCTGGGGATCCATCCTCTAAACAACCACCAAACCCA  650

seq1  GACACTGTTGCCTATGCCAACAAGAGCTTGCTGACAGGAGCCTGATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTGCCTATGCCAACAAGAGCTTGCTGACAGGAGCCTGATATGG  700

seq1  CTGTCTCCTTAGGGGCTCTGCCAGTGCCTGGCAAATACAAAAGTGGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTTAGGGGCTCTGCCAGTGCCTGGCAAATACAAAAGTGGATGC  750

seq1  TCAC-AATCATCCATTGGACGGAGCACAAGGTCCCCAATGAAGGAGCTAG  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATCATCCATTGGACGGAGCACAAGGTCCCCAATGAAGGAGCTAG  800

seq1  AGAAAGTACCTAAGGAGCTGAAGGGGTTTGAAGCCCCATAGGAGGAACAT  849
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  AGAAAGTACCTAAGGAGCTGAAGGGG-TTGGAGCCCCATAGGAGGAACAT  849

seq1  CAATATGAGCTAACCAGTACCCCCAGAGCTCCTTCGAACTAAACCACCAA  899
      ||||||||||||||||||| |||||||||||||||||||| ||||||  |
seq2  CAATATGAGCTAACCAGTA-CCCCAGAGCTCCTTCGAACT-AACCAC--A  895

seq1  TCAAATAAAACACATGGTGGAACTTGTGGCTCTAGCTGTATATGTAGCAG  949
      |||||||||||||||||||| |||||||||||||||||  | ||||||||
seq2  TCAAATAAAACACATGGTGG-ACTTGTGGCTCTAGCTGGTTTTGTAGCAG  944

seq1  AGGACGGCCTAGTTAGTCATCAATGGGAGGAGAGGCCCTAGGTCCTGTGA  999
      ||||||| |||| |||| ||| ||||||||||||||| |||   ||||||
seq2  AGGACGG-CTAG-TAGT-ATC-ATGGGAGGAGAGGCCTTAG--TCTGTGA  988

seq1  AGGTTCTATGCCC  1012
      ||||| |||||||
seq2  AGGTT-TATGCCC  1000