BAC Information

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BAC

Clone NameB6Ng01-075I05
Chromosome12 (Build37)6 (Build37)
Map Location 8,807,822 - 8,808,05073,857,468 - 73,858,154
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1
Downstream geneLaptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075I05.bB6Ng01-075I05.g
ACCDH892053DH892054
length698687
definitionDH892053|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I05, 5' end.DH892054|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,807,822 - 8,808,050)(73,857,468 - 73,858,154)
sequence
gaattcctaaattcttttttttctaattttcttttttattgttatttaat
ctttttatttttttacactccagattttcttctgctccagatccaccctc
caaatcttccacatcccatacctcctccttgaacccctgtctccacaagg
atatccacacccgccatcccccaaccatagacctctaaatcctctggggc
ctccattctcttgagggttaggtgcatcttctctgactgaacccagaccc
agcagtcctctgctgtatatgtgttggggtcctcatatcaaatggtatat
gctgcctagttggtggtctagtgtctgaaggatctcgggggtccaggtta
attgagactgctattcctcttatagggtcaccctcctcctcagcttcttc
cggcttttctttaattcatccacagtggtcagcaggttctgtccattggt
taggtgcaaatgtctgcatctgactctttcagctgcttgttgggtctttc
agagggcagtcatgataggtccccttttttcatgttttaactggagatat
atatatatatacacacacacacacacacacacacacacacacacacacac
atatatatacatacacatatatatacatatacacacacacatatatatat
acacacacacacatatatatatatatatacacacacacatacatacac
gaattcttacttagtaatgctcacttgaaagtaaagcactgaaaaaagtc
cctcgggatcacaatctatctttgatggatatgttttgtgaggtagcgca
tttaagaaacaaaatgaaaatccatttccgtttcatgaaaaatgtaatag
gcacttactctttgataaaagtagcatgcatactttaaggctttgaatgt
gagtcctcctttttgaccttacaaaacgggactcaggacatggtgactgg
tactgacagtagtattgagtcatccgatatctcaggctggtggataagga
taacaaatacgtgatcattcagatatagttccgtaattcttgagacagag
gtcacattaattgttttacagtgctcaacaacacaaaattaagttttcta
gggtaatttcgtcaataatatttccatggtcaaggatttttttctcctac
attttatatttgttgaagtatcattaacatgtttaactcagatttgtata
actctgtcttagcaatgtttctattgctatgataaggcactgggacagtg
gccccagctatgtatgtagaaggtccttggccctgtggaggcttgttgct
ctggtatagggggatgctagaagggtgaggcaagagtgagtgggagcagc
ttcttagaggcaaagggggagggttgggatggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8807822_8808050
seq2: B6Ng01-075I05.b_606_746 (reverse)

seq1  GTGTATGTATGTGTGTGTATATATGTGTATGTGTGTATGTATGTGTGTAT  50
      |||||||||||||||||| ||||| | ||                  |||
seq2  GTGTATGTATGTGTGTGTGTATATATATA------------------TAT  32

seq1  ATATGTGTGTGTATGTATGTGTGTATATATATGTGTGTGTGTATGTGTAT  100
      |||||||||||      ||||| ||||||||||||||||||||| |||| 
seq2  ATATGTGTGTG------TGTGTATATATATATGTGTGTGTGTATATGTA-  75

seq1  GTGTATATTTGTATGTATGTGTGTGTATATGTGTGTGTATGTATATATGT  150
       | ||||| ||||||||      | ||||||||||||| ||| | | |||
seq2  -TATATATGTGTATGTA------TATATATGTGTGTGTGTGTGTGTGTGT  118

seq1  GTGTATATGTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGT  200
      |||| | ||||||| ||| | ||                           
seq2  GTGTGTGTGTGTGTGTGTGTATA---------------------------  141

seq1  ATGTGTGTATATGTGTGTGTGTGTGTATA  229
                                   
seq2  -----------------------------  141

seq1: chr6_73857468_73858154
seq2: B6Ng01-075I05.g_70_756

seq1  GAATTCTTACTTAGTAATGCTCACTTGAAAGTAAAGCACTGAAAAAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTAGTAATGCTCACTTGAAAGTAAAGCACTGAAAAAAGTC  50

seq1  CCTCGGGATCACAATCTATCTTTGATGGATATGTTTTGTGAGGTAGCGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGATCACAATCTATCTTTGATGGATATGTTTTGTGAGGTAGCGCA  100

seq1  TTTAAGAAACAAAATGAAAATCCATTTCCGTTTCATGAAAAATGTAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAACAAAATGAAAATCCATTTCCGTTTCATGAAAAATGTAATAG  150

seq1  GCACTTACTCTTTGATAAAAGTAGCATGCATACTTTAAGGCTTTGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTACTCTTTGATAAAAGTAGCATGCATACTTTAAGGCTTTGAATGT  200

seq1  GAGTCCTCCTTTTTGACCTTACAAAACGGGACTCAGGACATGGTGACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCCTTTTTGACCTTACAAAACGGGACTCAGGACATGGTGACTGG  250

seq1  TACTGACAGTAGTATTGAGTCATCCGATATCTCAGGCTGGTGGATAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACAGTAGTATTGAGTCATCCGATATCTCAGGCTGGTGGATAAGGA  300

seq1  TAACAAATACGTGATCATTCAGATATAGTTCCGTAATTCTTGAGACAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATACGTGATCATTCAGATATAGTTCCGTAATTCTTGAGACAGAG  350

seq1  GTCACATTAATTGTTTTACAGTGCTCAACAACACAAAATTAAGTTTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTAATTGTTTTACAGTGCTCAACAACACAAAATTAAGTTTTCTA  400

seq1  GGGTAATTTCGTCAATAATATTTCCATGGTCAAGGATTTTTTTCTCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTTCGTCAATAATATTTCCATGGTCAAGGATTTTTTTCTCCTAC  450

seq1  ATTTTATATTTGTTGAAGTATCATTAACATGTTTAACTCAGATTTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATTTGTTGAAGTATCATTAACATGTTTAACTCAGATTTGTATA  500

seq1  ACTCTGTCTTAGCAATGTTTCTATTGCTATGATAAGGCACTGGGACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTTAGCAATGTTTCTATTGCTATGATAAGGCACTGGGACAGTG  550

seq1  GCCCCAGCTATGTATGTAGAAGGTCCTTGGCCCTGTGGAGGCTTGTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCTATGTATGTAGAAGGTCCTTGGCCCTGTGGAGGCTTGTTGCT  600

seq1  CTGGTATAGGGGGATGCTAGAAGGGTGAGGCAAGAGTGAGTGGGAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATAGGGGGATGCTAGAAGGGTGAGGCAAGAGTGAGTGGGAGCAGC  650

seq1  TTCTTAGAGGCAAAGGGGGAGGGTTGGGATGGGGTGT  687
      |||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAGGCAAAGGGGGAGGGTTGGGATGGGGTGT  687