BAC Information

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BAC

Clone NameB6Ng01-075I11
Chromosome6 (Build37)
Map Location 41,808,029 - 41,809,160
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip
Downstream geneSval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075I11.bB6Ng01-075I11.g
ACCDH892065DH892066
length1,2551,127
definitionDH892065|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I11, 5' end.DH892066|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaattaacaaaatcagaaatgaaaagggagacataacaacagat
cctgaagaaatccaaaacaccatcagatccttctacaaaaagctatactt
aacaaaactggaaaacctggatgaaatggacaagtttctagacagatacc
aggtaccaaagttaaatcaagatcagattaatgatctaaacagtcctata
tcccctaaaaaaatagaagcagtcattaatggtctcccaaccaaaaaaag
cataggaccagatgggtttagtgcagagttctatcagaccttcaaagaag
atctaatcccggttcttcacaaactattccacaaaatagaagtagaaggt
actctacccaactcattctatgaagccactattactctgatacctaaacc
acaaaaagaccaaacaaagacagagaacttcagaccaatttcccttatga
ttatcgatgcaaaaatcctcaataaaattctcgctaaccgaatccaagaa
cacatcaaacaatcatccatcctgaccaagtaggtttcatcccagtgatg
cagagatggttcaatatacggaaatccatcaacgtaatccagtatataaa
caaactcaaagacaaaaaccacatgatcatctagttagatgctgagaaag
catttgacaaaatccaacacccattcatgataaaagtctttggaaagatc
aggaattcaaggcccatacctaaacatgataaaagcaatctacagcaaac
cagtagacaacatcaaagtaaatggagagaagctggaagcaatcccacta
aaatcagggactagacaaggctgcccactttctccctaccttttcaacat
agtacttgaagtattagccagagcaattcgacacaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatattatttttagcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaagcc
tataacagcttcaaacaagtagctggatataaaattaactcaaacaagtc
aatggcctttctgttcccaaaggataaaccagcctgaaaaagaaatatga
acaacaccctcctcaatagtacaataatataaaataccttggcgtgactc
taactaggagtgaaagaatctggtaaaaaaaaacttcaagtccttgagag
gactagagagattcaaaaatggttagaattccctctgcctcatgattggc
gagag
gaattcccactgaactccttgatctaacaattcattttactgtaattcaa
tccaacaatgggattttcctttggtaacatggaatgtccatttgggggcc
ctgtctccccaattatttagggggctttatttgaattgctttctgttatg
catacttcttagggaacttctactggattacatttctttactactcctaa
aatgtcccttaattttagatatctttctccatattctttttttcactgta
cactgatatgcttagagacaaagctgttaattagtctttgaaaaagaata
gtttctgaggttgaacaaggtgccaggcttttccatacacatatgtaaca
cactttgattatgtttctgttgccatatcttatcctctgtagaaagcttg
tttgatcaactgtctttttctctgagtccccaatgcatagagaaatgaca
taactccttcttaaaaccaggaacatgcttggtagagccaaaatagactg
aatccatggctttgggagttttccccagaggccttgatgtatatctagag
atgctgagaacccaaatcttcactgagtatggggatatgactatcagttc
ccaggatgctctgtgcccagcctgtgatgttctgaagaaacagtgttcct
ctcatgcaacaggtttttactagcttcttgctattttccagataacatat
gataggttctactaatttcatcccatttctaacccaaaaagagtatataa
gaaaatgcacttcataataaagttggttggcaaaagatgtgtcttttaga
agacctcctgatcctaacttttcttatgttttctatcttttatccttttt
atcttatgatatcctggtactgtctcctaagactcagtcactgagcaatg
acctgttttgtcctggtcatatttcttcaattttttgaactccatgcata
gaaacttcaaaagttataaggaatcattgaaatacacaatgaattctcac
agcacattaaagaaaagagaagaagatgaaaaattgattttagggaagat
aagtaagtagcttattcaatgcattatttagggaaaaaccaccctagggt
gcattgccatctggatgtttgtcagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41808029_41809160
seq2: B6Ng01-075I11.g_66_1192

seq1  GAATTCCCACTGAACTCCTTGATCTAACAATTCATTTTACTGTAATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTGAACTCCTTGATCTAACAATTCATTTTACTGTAATTCAA  50

seq1  TCCAACAATGGGATTTTCCTTTGGTAACATGGAATGTCCATTTGGGGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAATGGGATTTTCCTTTGGTAACATGGAATGTCCATTTGGGGGCC  100

seq1  CTGTCTCCCCAATTATTTAGGGGGCTTTATTTGAATTGCTTTCTGTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCCCAATTATTTAGGGGGCTTTATTTGAATTGCTTTCTGTTATG  150

seq1  CATACTTCTTAGGGAACTTCTACTGGATTACATTTCTTTACTACTCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTCTTAGGGAACTTCTACTGGATTACATTTCTTTACTACTCCTAA  200

seq1  AATGTCCCTTAATTTTAGATATCTTTCTCCATATTCTTTTTTTCACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCTTAATTTTAGATATCTTTCTCCATATTCTTTTTTTCACTGTA  250

seq1  CACTGATATGCTTAGAGACAAAGCTGTTAATTAGTCTTTGAAAAAGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATATGCTTAGAGACAAAGCTGTTAATTAGTCTTTGAAAAAGAATA  300

seq1  GTTTCTGAGGTTGAACAAGGTGCCAGGCTTTTCCATACACATATGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGGTTGAACAAGGTGCCAGGCTTTTCCATACACATATGTAACA  350

seq1  CACTTTGATTATGTTTCTGTTGCCATATCTTATCCTCTGTAGAAAGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGATTATGTTTCTGTTGCCATATCTTATCCTCTGTAGAAAGCTTG  400

seq1  TTTGATCAACTGTCTTTTTCTCTGAGTCCCCAATGCATAGAGAAATGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCAACTGTCTTTTTCTCTGAGTCCCCAATGCATAGAGAAATGACA  450

seq1  TAACTCCTTCTTAAAACCAGGAACATGCTTGGTAGAGCCAAAATAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTTCTTAAAACCAGGAACATGCTTGGTAGAGCCAAAATAGACTG  500

seq1  AATCCATGGCTTTGGGAGTTTTCCCCAGAGGCCTTGATGTATATCTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGGCTTTGGGAGTTTTCCCCAGAGGCCTTGATGTATATCTAGAG  550

seq1  ATGCTGAGAACCCAAATCTTCACTGAGTATGGGGATATGACTATCAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGAACCCAAATCTTCACTGAGTATGGGGATATGACTATCAGTTC  600

seq1  CCAGGATGCTCTGTGCCCAGCCTGTGATGTTCTGAAGAAACAGTGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGCTCTGTGCCCAGCCTGTGATGTTCTGAAGAAACAGTGTTCCT  650

seq1  CTCATGCAACAGGTTTTTACTAGCTTCTTGCTATTTTCCAGATAACATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCAACAGGTTTTTACTAGCTTCTTGCTATTTTCCAGATAACATAT  700

seq1  GATAGGTTCTACTAATTTCATCCCATTTCTAACCCAAAAAGAGTATATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTTCTACTAATTTCATCCCATTTCTAACCCAAAAAGAGTATATAA  750

seq1  GAAAATGCACTTCATAATAAAGTTGGTTGGCAAAAGATGTGTCTTTTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCACTTCATAATAAAGTTGGTTGGCAAAAGATGTGTCTTTTAGA  800

seq1  AGACCTCCTGATCCTAACTTTTCTTATGTTTTCTATCTTTTATCCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCTGATCCTAACTTTTCTTATGTTTTCTATCTTTTATCCTTTTT  850

seq1  ATCTTATGATATCCTGGTACTGTCTCCTAAGACTCAGTCACTGAGCAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGATATCCTGGTACTGTCTCCTAAGACTCAGTCACTGAGCAATG  900

seq1  ACCTG-TTTGTCCTGGTCATATTTCTTCAATTTTTTGAACTCCATGCAAT  949
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCTGTTTTGTCCTGGTCATATTTCTTCAATTTTTTGAACTCCATGC-AT  949

seq1  AGAAACTTCAAAAGTTATAAGGAATCAATGAAATACACAATGAATTCTCA  999
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAAACTTCAAAAGTTATAAGGAATCATTGAAATACACAATGAATTCTCA  999

seq1  CAAGCAACATTAAAGAAAAGAGAAAGAAGATGAAAAATGAATTTTAGGGA  1049
      | ||| |||||||||||||||| |||||||||||||||  ||||||||||
seq2  C-AGC-ACATTAAAGAAAAGAG-AAGAAGATGAAAAATTGATTTTAGGGA  1046

seq1  AGATAAAGTAAGGTAGCTAATTCAATGCATTTATTTAAGGGGAAAAACAA  1099
      |||| |||||| |||||| |||||||||| |||||| |||| |||| || 
seq2  AGAT-AAGTAA-GTAGCTTATTCAATGCA-TTATTT-AGGGAAAAACCAC  1092

seq1  CCTAGGGTGCA-TGGCATCT-GATGTTTGTCAGTA  1132
      ||||||||||| || ||||| ||||||||||||||
seq2  CCTAGGGTGCATTGCCATCTGGATGTTTGTCAGTA  1127